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List of works by Blake Meyers

24-nt reproductive phasiRNAs are broadly present in angiosperms

scientific article published in Nature Communications

A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice.

scientific article

A comparison of global gene expression measurement technologies in Arabidopsis thaliana

scientific article published on January 2004

A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis

scientific article

A highly conserved, small LTR retrotransposon that preferentially targets genes in grass genomes

scientific article (publication date: 2012)

A microRNA of infectious laryngotracheitis virus can downregulate and direct cleavage of ICP4 mRNA.

scientific article published on 12 January 2011

A new approach for annotation of transposable elements using small RNA mapping

scientific article published on 26 March 2015

A spatial dissection of the Arabidopsis floral transcriptome by MPSS.

scientific article

A transposable element is domesticated for service in the plant immune system

scientific article published on 30 August 2013

AGO6 functions in RNA-mediated transcriptional gene silencing in shoot and root meristems in Arabidopsis thaliana

scientific article

Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome

scientific article

Abundant expression of maternal siRNAs is a conserved feature of seed development

scientific article published on 15 June 2020

An Agrobacterium-delivered CRISPR/Cas9 system for high-frequency targeted mutagenesis in maize

scientific article published on 11 August 2016

An Online Database for Exploring Over 2,000 Arabidopsis Small RNA Libraries

scientific article published on 16 December 2019

An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes.

scientific article published on 2 December 2014

An expression atlas of rice mRNAs and small RNAs

scientific article

An integrated workflow for DNA methylation analysis

scientific article

Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing

scientific article

Arabidopsis MPSS. An online resource for quantitative expression analysis

article

Atypical DNA methylation of genes encoding cysteine-rich peptides in Arabidopsis thaliana

scientific article

Author Correction: Synergy between the anthocyanin and RDR6/SGS3/DCL4 siRNA pathways expose hidden features of Arabidopsis carbon metabolism

scientific article published on 14 October 2020

Automated imaging of duckweed growth and development

scientific article published in 2022

Biogenesis and function of rice small RNAs from non-coding RNA precursors.

scientific article published on March 2013

Biogenesis of a 22-nt microRNA in Phaseoleae species by precursor-programmed uridylation

article published in the Proceedings of the National Academy of Sciences of the United States of America

Biogenesis of a young, 22-nt microRNA in Phaseoleae species by precursor-programmed uridylation

Bioinformatics analysis of small RNAs in plants using next generation sequencing technologies

scientific article published in January 2010

CHH DNA methylation increases at 24-PHAS loci depend on 24-nt phasiRNAs in maize meiotic anthers

scientific article published on 01 November 2020

Cell Cycle-Dependent Regulation and Function of ARGONAUTE1 in Plants

scientific article published on 12 June 2019

Characterization of paralogous protein families in rice

scientific article

Cis-directed cleavage and nonstoichiometric abundances of 21-nucleotide reproductive phased small interfering RNAs in grasses

scientific article published on 30 April 2018

Comparative expression profiling in grape (Vitis vinifera) berries derived from frequency analysis of ESTs and MPSS signatures

scientific article

Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species

scientific article

Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading, and target cleavage

scientific article

Computational methods for comparative analysis of plant small RNAs.

scientific article

Conservation and divergence in eukaryotic DNA methylation.

scientific article

Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome

scientific article

Construction of Specific Parallel Amplification of RNA Ends (SPARE) libraries for the systematic identification of plant microRNA processing intermediates.

scientific article

Construction of small RNA cDNA libraries for deep sequencing

scientific article

Criteria for annotation of plant MicroRNAs

scientific article published on 12 December 2008

Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods

scientific article

Deep sequencing of chicken microRNAs

scientific article

Deep sequencing reveals the complex and coordinated transcriptional regulation of genes related to grain quality in rice cultivars ⬇️

scientific article

Detailed analysis of a contiguous 22-Mb region of the maize genome

scientific article

Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice

scientific article published on 19 February 2014

Dicer-like 5 deficiency confers temperature-sensitive male sterility in maize

scientific article published on 09 June 2020

Discovery of ADP-ribosylation and other plant defense pathway elements through expression profiling of four different Arabidopsis-Pseudomonas R-avr interactions

scientific article published in May 2008

Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning

scientific article

Distinct and concurrent pathways of Pol II- and Pol IV-dependent siRNA biogenesis at a repetitive trans-silencer locus in Arabidopsis thaliana

scientific article

Distinct extremely abundant siRNAs associated with cosuppression in petunia

scientific article published on 23 September 2009

Distinct size distribution of endogeneous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant

scholarly article

Divergence in Expression between Duplicated Genes in Arabidopsis

article

Dynamic changes of small RNAs in rice spikelet development reveal specialized reproductive phasiRNA pathways

scientific article published on 04 October 2016

Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata.

scientific article published on 16 June 2004

Efficiency and precision of microRNA biogenesis modes in plants

article

Efficient transformation and artificial miRNA gene silencing in Lemna minor

scientific article published on 2 July 2014

Elucidation of the small RNA component of the transcriptome

scientific article

Evolution and diversification of reproductive phased small interfering RNAs in Oryza species

scientific article published on 28 October 2020

Evolution of plant genome architecture

scientific article

Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean

scientific article published on 6 March 2015

Evolving disease resistance genes.

scientific article

Experimental design, preprocessing, normalization and differential expression analysis of small RNA sequencing experiments.

scientific article

FASTmiR: an RNA-based sensor for in vitro quantification and live-cell localization of small RNAs

scientific article published on 6 June 2017

Focus on RNA biology

scientific article published on 29 May 2023

Foundational and Translational Research Opportunities to Improve Plant Health.

scientific article

Frequent sequence exchanges between homologs of RPP8 in Arabidopsis are not necessarily associated with genomic proximity.

scientific article

GC-rich coding sequences reduce transposon-like, small RNA-mediated transgene silencing

scientific article published on 30 October 2017

Gene tagging via CRISPR-mediated homology-directed repair in cassava

scientific article published in 2021

Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce

scientific article

Genome evolution following host jumps in the Irish potato famine pathogen lineage

scientific article published in December 2010

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

scientific article

Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean

scientific article published on 22 August 2019

Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs).

scientific article

Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis.

scientific article

Genome-wide identification of NBS resistance genes in Populus trichocarpa

scientific article

Genome-wide in silico mapping of scaffold/matrix attachment regions in Arabidopsis suggests correlation of intragenic scaffold/matrix attachment regions with gene expression

scientific article published on June 2004

Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere

scientific article published on 28 July 2006

Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses

scientific article published on 3 February 2010

Genomic approaches for studying transcriptional and post-transcriptional processes

scientific article published on 01 May 2014

Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis

scientific article

Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

scientific article

HDT701, a histone H4 deacetylase, negatively regulates plant innate immunity by modulating histone H4 acetylation of defense-related genes in rice

scientific article published on 11 September 2012

High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs

scientific article published on 28 January 2016

INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis

scientific article

Identification and analysis of common bean (Phaseolus vulgaris L.) transcriptomes by massively parallel pyrosequencing

scientific article

Identification and characterization of in planta-expressed secreted effector proteins from Magnaporthe oryzae that induce cell death in rice

scientific article

Identification and functional characterization of soybean root hair microRNAs expressed in response to Bradyrhizobium japonicum infection.

scientific article published on 14 May 2015

Identification of candidate genes associated with positive and negative heterosis in rice

scientific article

Introduction of barnase/barstar in soybean produces a rescuable male sterility system for hybrid breeding

scientific article published in 2023

Journal Flexibility in the Troubling Times of COVID-19

scientific article published on 18 March 2020

Journal Flexibility in the Troubling Times of COVID-19

scientific article published on 01 April 2020

Large Scale Identification of Genes Involved in Plant–Fungal Interactions Using Illumina’s Sequencing-by-Synthesis Technology ⬇️

scientific article published on January 1, 2011

MS23, a master basic helix-loop-helix factor, regulates the specification and development of the tapetum in maize.

scientific article published on 2 December 2016

Mapping and sequencing complex genomes: let's get physical!

scientific article published in August 2004

Marek's disease virus encodes MicroRNAs that map to meq and the latency-associated transcript

scientific article

Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage

scientific article

Methods for analysis of gene expression in plants using MPSS.

scientific article

Methods for transcriptional profiling in plants. Be fruitful and replicate

scientific article published on June 2004

MicroRNA Processing: Battle of the Bulge

scientific article published on 01 January 2010

MicroRNA superfamilies descended from miR390 and their roles in secondary small interfering RNA Biogenesis in Eudicots

scientific article

MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant

scientific article

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs.

scientific article

MicroRNAs in Plants: Key Findings from the Early Years

scientific article published on 29 April 2019

MicroRNAs in the rhizobia legume symbiosis

scientific article published on 29 September 2009

MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific

scientific article published on 28 March 2009

Microsporogenesis and the biosynthesis of floral small interfering RNAs in coffee have a unique pattern among eudicots, suggesting a sensitivity to climate changes

scientific article published in 2024

Multiple RNA recognition patterns during microRNA biogenesis in plants.

scientific article published on 29 August 2013

Multiple genetic processes result in heterogeneous rates of evolution within the major cluster disease resistance genes in lettuce

scientific article

Next-Generation Sequence Databases: RNA and Genomic Informatics Resources for Plants

scientific article published on 05 November 2019

Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry

scientific article

PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice

scientific article published on 13 December 2016

Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon

scientific article

Pathogen Trojan horse delivers bioactive host protein to alter maize (Zea mays) anther cell behavior in situ.

scientific article published on 15 February 2018

Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana.

scientific article published on September 2002

Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks

scientific article published on 23 July 2013

Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae. ⬇️

scientific article

Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots

scientific article published on 12 July 2018

Plant Extracellular Vesicles Contain Diverse Small RNA Species and Are Enriched in 10- to 17-Nucleotide "Tiny" RNAs

article

Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily

scientific article published on November 1999

Plants regenerated from tissue culture contain stable epigenome changes in rice

scientific article published on 19 March 2013

Prediction of novel miRNAs and associated target genes in Glycine max.

scientific article

RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats.

scientific article published on July 2012

RNA-Seq reveals infection-related global gene changes in Phytophthora phaseoli, the causal agent of lima bean downy mildew

scientific article

RNA-directed DNA methylation and plant development require an IWR1-type transcription factor

scientific article

RNA-mediated trans-communication can establish paramutation at the b1 locus in maize

scientific article

Rapid construction of parallel analysis of RNA end (PARE) libraries for Illumina sequencing.

scientific article

Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection

scientific article

Regulatory Role of a Receptor-Like Kinase in Specifying Anther Cell Identity.

scientific article

Reprint of: construction of Specific Parallel Amplification of RNA Ends (SPARE) libraries for the systematic identification of plant microRNA processing intermediates.

scientific article

Reproductive phasiRNAs in grasses are compositionally distinct from other classes of small RNAs

scientific article published on 18 July 2018

Revisiting criteria for plant miRNA annotation in the era of big data

scientific article published on 17 January 2018

Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

scientific article

Roles of small RNAs in soybean defense against Phytophthora sojae infection.

scientific article published on 28 July 2014

Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs.

scientific article

Secondary siRNAs from Medicago NB-LRRs modulated via miRNA-target interactions and their abundances

scientific article published on 30 June 2015

Sequence conservation and differential expression of Marek's disease virus microRNAs

scientific article published on 8 October 2008

Short-read sequencing technologies for transcriptional analyses.

scientific article published on January 2009

Small RNA Functions Are Required for Growth and Development of Magnaporthe oryzae.

scientific article published on 15 May 2017

Small RNA-directed epigenetic natural variation in Arabidopsis thaliana

scientific article

Small RNA-mediated epigenetic modifications in plants

scientific article published on 13 December 2010

Small RNAs Add Zing to the Zig-Zag-Zig Model of Plant Defenses.

scientific article published on 11 February 2016

Spatiotemporal expression control correlates with intragenic scaffold matrix attachment regions (S/MARs) in Arabidopsis thaliana

scientific article

Spatiotemporally dynamic, cell-type-dependent premeiotic and meiotic phasiRNAs in maize anthers.

scientific article

Sweating the small stuff: microRNA discovery in plants

scientific article

Synergy between the anthocyanin and RDR6/SGS3/DCL4 siRNA pathways expose hidden features of Arabidopsis carbon metabolism

scientific article published on 15 May 2020

TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes

scientific article published in October 2002

Temperature and light reverse the fertility of rice P/<scp>TGMS</scp> line <i>ostms19</i> via reactive oxygen species homeostasis

scientific article published in 2024

Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple

scientific article

The Arabidopsis nucleotidyl transferase HESO1 uridylates unmethylated small RNAs to trigger their degradation

scientific article

The Clostridium small RNome that responds to stress: the paradigm and importance of toxic metabolite stress in C. acetobutylicum

scientific article

The Dominant and Poorly Penetrant Phenotypes of Maize Unstable factor for orange1 Are Caused by DNA Methylation Changes at a Linked Transposon

scientific article published on 18 December 2018

The Emergence, Evolution, and Diversification of the miR390-TAS3-ARF Pathway in Land Plants

scientific article published on 24 April 2017

The Influence of Genotype and Environment on Small RNA Profiles in Grapevine Berry

scientific article

The Medicago genome provides insight into the evolution of rhizobial symbioses

scientific article

The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology.

scientific article published in December 2017

The RNA world is alive and well

scientific article published on 16 June 2008

The asparagus genome sheds light on the origin and evolution of a young Y chromosome

scientific article published on 2 November 2017

The development of extracellular vesicle markers for the fungal phytopathogen Colletotrichum higginsianum

scientific article published on 01 May 2022

The dicer-like1 homolog fuzzy tassel is required for the regulation of meristem determinacy in the inflorescence and vegetative growth in maize

scientific article

The evolutionary history of small RNAs in Solanaceae

scientific article published on 01 June 2022

The explant developmental stage profoundly impacts small RNA-mediated regulation at the dedifferentiation step of maize somatic embryogenesis

scientific article published on 10 October 2019

The functional role of pack-MULEs in rice inferred from purifying selection and expression profile

scientific article published in 2009

The major resistance gene cluster in lettuce is highly duplicated and spans several megabases

scientific article

The role of TIR-NBS and TIR-X proteins in plant basal defense responses

scientific article published on 4 June 2013

The use of MPSS for whole-genome transcriptional analysis in Arabidopsis

scientific article

Threshold-dependent repression of SPL gene expression by miR156/miR157 controls vegetative phase change in Arabidopsis thaliana.

scientific article published on 19 April 2018

Tracing the origin and evolutionary history of plant nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes

scientific article published on 23 December 2011

Transcriptional analysis of the Arabidopsis ovule by massively parallel signature sequencing

scientific article

Transcriptional similarities, dissimilarities, and conservation of cis-elements in duplicated genes of Arabidopsis.

scientific article

Transcriptome and methylome interactions in rice hybrids.

scientific article

Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing.

scientific article

Transgenerational conditioned male fertility of HD-ZIP IV transcription factor mutant ocl4: impact on 21-nt phasiRNA accumulation in pre-meiotic maize anthers

scientific article published in 2021

Variation and Inheritance of Small RNAs in Maize Inbreds and F1 Hybrids

scientific article published on 01 October 2019

hATpin, a family of MITE-like hAT mobile elements conserved in diverse plant species that forms highly stable secondary structures

scientific article

miRNAs in the Plant Genome: All Things Great and Small

scientific article published in January 2008

miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis.

scientific article

miRVine: a microRNA expression atlas of grapevine based on small RNA sequencing

scientific article published on 16 May 2015

miTRATA: a web-based tool for microRNA Truncation and Tailing Analysis

scientific article published on 10 October 2015

required to maintain repression2 is a novel protein that facilitates locus-specific paramutation in maize

scientific article published on 4 May 2012

sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software

scientific article (publication date: October 2014)

sRNA-FISH: versatile fluorescent in situ detection of small RNAs in plants

scientific article published on 12 February 2019

siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis

scientific article

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