List of works by W. Richard McCombie

708 Common and 2010 rare DISC1 locus variants identified in 1542 subjects: analysis for association with psychiatric disorder and cognitive traits

scientific article

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

scientific article published on 22 April 2013

A hybrid likelihood model for sequence-based disease association studies

scientific article

A resource for large-scale RNA-interference-based screens in mammals.

scientific article published in March 2004

A survey of canine expressed sequence tags and a display of their annotations through a flexible web-based interface

scientific article

A workshop report on wheat genome sequencing: International Genome Research on Wheat Consortium

scientific article

Alta-Cyclic: a self-optimizing base caller for next-generation sequencing

scientific article

An insert mutation in the chromosome 20 amyloid precursor gene in a Gerstmann-Sträussler-Scheinker family

scientific article published on September 1992

An oncogenomics-based in vivo RNAi screen identifies tumor suppressors in liver cancer

scientific article

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

scientific article

Automated DNA sequencing and analysis of 106 kilobases from human chromosome 19q13.3

scientific article published on April 1, 1992

Chd5 requires PHD-mediated histone 3 binding for tumor suppression

scientific journal article

Comparative analysis of a Brassica BAC clone containing several major aliphatic glucosinolate genes with its corresponding Arabidopsis sequence

scientific article published in August 2004

Comparative analysis of a transposon-rich Brassica oleracea BAC clone with its corresponding sequence in A. thaliana.

scientific article published in September 2005

Comparative analysis of methylthioalkylmalate synthase (MAM) gene family and flanking DNA sequences in Brassica oleracea and Arabidopsis thaliana

scientific article published on 24 January 2006

Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana

scientific article

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

scientific article

Current challenges in de novo plant genome sequencing and assembly

scientific article

DISC1 as a genetic risk factor for schizophrenia and related major mental illness: response to Sullivan

scientific article published in February 2014

De Novo Gene Disruptions in Children on the Autistic Spectrum

scientific article (publication date: April 2012)

De novo mutations in schizophrenia implicate chromatin remodeling and support a genetic overlap with autism and intellectual disability

scientific article

Detailed analysis of a contiguous 22-Mb region of the maize genome

scientific article

Differential methylation of genes and repeats in land plants

scientific article

Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome

scientific article

Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment

scientific article

Discovery of novel human breast cancer microRNAs from deep sequencing data by analysis of pri-microRNA secondary structures

scientific article

Distinct p53 genomic binding patterns in normal and cancer-derived human cells

scientific article published on 15 December 2011

EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes

scientific article

Epigenetic natural variation in Arabidopsis thaliana

scientific article

Establishing the baseline level of repetitive element expression in the human cortex

scientific article

Evolution and microsynteny of the apyrase gene family in three legume genomes

scientific article published on 4 November 2003

FamAnn: an automated variant annotation pipeline to facilitate target discovery for family-based sequencing studies

scientific article published on 13 January 2014

Fluorescence-Based Sequencing of Double-Stranded DNA by Hexamer String Priming

scientific article published on 01 October 1996

Functional identification of tumor-suppressor genes through an in vivo RNA interference screen in a mouse lymphoma model

scientific article

GFScan: a gene family search tool at genomic DNA level

scientific article published on July 2002

Gene enrichment in plant genomic shotgun libraries

scientific article

Genes and transposons are differentially methylated in plants, but not in mammals

scientific article

Genetic analysis using genomic representations

scientific article

Genetic definition and sequence analysis of Arabidopsis centromeres

scientific article published in December 1999

Genome Sequencing Conference I: Summary

Genome-wide in situ exon capture for selective resequencing

scientific article published on 4 November 2007

Genome-wide transposon tagging reveals location-dependent effects on transcription and chromatin organization in Arabidopsis

scientific article

Genomic amplification and oncogenic properties of the KCNK9 potassium channel gene

scientific article

High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing

scientific article published on 06 July 2009

High-Throughput Sequencing

scientific article

High-content analysis of cancer genome DNA alterations

scientific article published on February 2008

Identification of mesoderm development (mesd) candidate genes by comparative mapping and genome sequence analysis

scientific article

Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

scientific article

Inactivation of the apoptosis effector Apaf-1 in malignant melanoma

scientific article

Initial sequencing and analysis of the human genome

scientific article published on 15 February 2001

Initial sequencing and comparative analysis of the mouse genome

scientific article

Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots

scientific article

Loss of p53 impedes the antileukemic response to BCR-ABL inhibition

scholarly article

Maize HapMap2 identifies extant variation from a genome in flux.

scientific article

Maize genome sequencing by methylation filtration

scientific article

Mapping epigenetic mutations in fission yeast using whole-genome next-generation sequencing

scientific article

Massively parallel bisulphite pyrosequencing reveals the molecular complexity of breast cancer-associated cytosine-methylation patterns obtained from tissue and serum DNA.

scientific article

Mutations in the pancreatic secretory enzymes CPA1 and CPB1 are associated with pancreatic cancer.

scientific article published on 18 April 2018

Next-generation sequencing of endoscopic biopsies identifies ARID1A as a tumor-suppressor gene in Barrett's esophagus

scientific article

Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets

scientific article

Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae).

scientific article

Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.).

scientific article

Proteomic analysis of a disease-resistance-enhanced lesion mimic mutant spotted leaf 5 in rice

scientific article

Rapid Selection Using G418 of High Copy Number Transformants of Pichia pastoris for High–level Foreign Gene Expression

article

Rapid and reliable fluorescent cycle sequencing of double-stranded templates

scientific article

Rapid isolation of cDNA by hybridization

scientific article

Role of transposable elements in heterochromatin and epigenetic control

scientific article (publication date: 22 July 2004)

SDG8-Mediated Histone Methylation and RNA Processing Function in the Response to Nitrate Signaling

scientific article published on 22 October 2019

Secretion trap tagging of secreted and membrane-spanning proteins using Arabidopsis gene traps

scientific article

Sequence analysis of the long arm of rice chromosome 11 for rice-wheat synteny

scientific article published on 14 April 2004

Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.

scientific article published in December 2000

Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species

scientific article

Sequencing and analysis of genomic fragments from the NF1 locus

scientific article published in January 1992

Small RNA-based silencing strategies for transposons in the process of invading Drosophila species

scientific article

Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary

scientific article

Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates

scientific article

SpliceTrap: a method to quantify alternative splicing under single cellular conditions

scientific article

Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genus Saccharum

scientific article

Syntenic relationships between Medicago truncatula and Arabidopsis reveal extensive divergence of genome organization

scientific article published in March 2003

The Arabidopsis SKP1-LIKE1 gene is essential for male meiosis and may control homologue separation

scientific article published on September 1999

The B73 Maize Genome: Complexity, Diversity, and Dynamics

scientific article

The effects of carbon dioxide and temperature on microRNA expression in Arabidopsis development

scientific article published in January 2013

The first plant genome

scientific article

The genome of Theobroma cacao

scientific article

The genome of the Wollemi pine, a critically endangered “living fossil” unchanged since the Cretaceous, reveals extensive ancient transposon activity

The genome sequence of Schizosaccharomyces pombe

scientific article

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA.

scientific article

The mouse genome: experimental examination of gene predictions and transcriptional start sites

scientific article published on December 2004

Topoisomerase levels determine chemotherapy responsein vitroandin vivo

scientific article (publication date: 23 June 2008)

Translating next generation sequencing to practice: opportunities and necessary steps

scientific article published on 15 May 2013

Transpositional landscape of the rice genome revealed by paired-end mapping of high-throughput re-sequencing data.

scientific article

Tumour evolution inferred by single-cell sequencing

scientific article

Unlocking the treasure trove: from genes to schizophrenia biology

scientific article published on 27 March 2014

What is finished, and why does it matter

scientific article

Whole Genome Sequencing Defines the Genetic Heterogeneity of Familial Pancreatic Cancer

scientific article published on 9 December 2015

Whole transcriptome analysis of the fasting and fed Burmese python heart: insights into extreme physiological cardiac adaptation

scientific article

zA map for sequence analysis of the Arabidopsis thaliana genome

scientific article

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