List of works - Nicola Segata

A Different Microbiome Gene Repertoire in the Airways of Cystic Fibrosis Patients with Severe Lung Disease

scientific article

A Scalable Noise Reduction Technique for Large Case-Based Systems

A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity

scientific article published on 15 December 2020

A framework for human microbiome research

scientific article

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets

scientific article

A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy

scientific article published in 2012

A unified catalog of 204,938 reference genomes from the human gut microbiome

scientific article published on 20 July 2020

Abstracts from the 23rd Italian congress of Cystic Fibrosis and the 13th National congress of Cystic Fibrosis Italian Society: Naples, Italy. 22-25 November 2017

scientific article published on 16 January 2018

Accessible, curated metagenomic data through ExperimentHub.

scientific article

Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples

scientific article published on 17 September 2019

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

scientific article published on 08 June 2020

At the forefront of the sequencing revolution-notes from the RNGS19 conference.

scientific article

Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

scientific article published on 01 December 2019

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019

Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut

scientific article

Biodiversity and functional genomics in the human microbiome

scientific article

Blue poo: impact of gut transit time on the gut microbiome using a novel marker ⬇️

scientific article published on 15 March 2021

Building essential biodiversity variables (EBVs) of species distribution and abundance at a global scale

scientific article

Characterization of 17 strains belonging to the Mycobacterium simiae complex and description of Mycobacterium paraense sp. nov.

scientific article published on 8 December 2014

Clinical populations of Pseudomonas aeruginosa isolated from acute infections show a wide virulence range partially correlated with population structure and virulence gene expression

article

CoCas9 is a compact nuclease from the human microbiome for efficient and precise genome editing

scientific article published in 2024

Compact graphical representation of phylogenetic data and metadata with GraPhlAn

scientific article

Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples

scientific article

Computational Tools for Taxonomic Microbiome Profiling of Shotgun Metagenomes

Computational meta'omics for microbial community studies

scientific article

Consumer Safety Considerations of Skin and Oral Microbiome Perturbation

scientific article published on 31 July 2019

Correction for Pinto et al., "Draft Genome Sequences of Novel Pseudomonas, Flavobacterium, and Sediminibacterium Strains from a Freshwater Ecosystem".

scientific article published on 8 March 2018

Correction for Tarallo et al., "Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples"

scientific article published on 18 February 2020

Corrigendum: Shotgun metagenomics, from sampling to analysis

scientific article published in December 2017

Critical Assessment of Metagenome Interpretation: the second round of challenges

scientific article published in April 2022

Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma

scientific article published on 28 February 2022

Cross-reactivity between tumor MHC class I-restricted antigens and an enterococcal bacteriophage

scientific article published on 01 August 2020

Dental Implants with Anti-Biofilm Properties: A Pilot Study for Developing a New Sericin-Based Coating

scientific article published on 30 July 2019

Detecting contamination in viromes using ViromeQC

scientific article published on 01 December 2019

Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets

scientific article published on 21 February 2019

Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates

scientific article published on 01 November 2019

Draft Genome Sequence of the Cadmium-Resistant Strain JJU2, Belonging to the Family Hapalosiphonaceae of the Cyanobacteria

scientific article published on 30 August 2018

Draft Genome Sequence of the Planktic Cyanobacterium Tychonema bourrellyi, Isolated from Alpine Lentic Freshwater

scientific article published on 22 November 2017

Draft Genome Sequences of Novel Pseudomonas, Flavobacterium, and Sediminibacterium Species Strains from a Freshwater Ecosystem

scientific article published in February 2018

Draft genome sequence of the anatoxin-a producing cyanobacterium <i>Tychonema bourrellyi</i> B0820 isolated from the epilimnion of the deep Alpine Lake Garda

scientific article published on 16 November 2023

Effect of Gluten-Free Diet on Gut Microbiota Composition in Patients with Celiac Disease and Non-Celiac Gluten/Wheat Sensitivity

scientific article published on 19 June 2020

Effects of a personalized nutrition program on cardiometabolic health: a randomized controlled trial

scientific article published on 8 May 2024

Endogenous murine microbiota member Faecalibaculum rodentium and its human homologue protect from intestinal tumour growth

scientific article published on 27 January 2020

Enhanced microbial diversity in the saliva microbiome induced by short-term probiotic intake revealed by 16S rRNA sequencing on the IonTorrent PGM platform

scientific article

Erratum: MetaPhlAn2 for enhanced metagenomic taxonomic profiling

scholarly article published in Nature Methods

Establishment of a non-Westernized gut microbiota in men who have sex with men is associated with sexual practices

scientific article published in March 2024

Evaluation of bifidobacterial community composition in the human gut by means of a targeted amplicon sequencing (ITS) protocol

scientific article

Evidence of natural Wolbachia infections in field populations of Anopheles gambiae

scientific article

Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis

scientific article published in 2013

Experimental metagenomics and ribosomal profiling of the human skin microbiome

scientific article published on 13 September 2016

Exploring Vertical Transmission of Bifidobacteria from Mother to Child

scientific article published on 31 July 2015

Exploring the relationship between social jetlag with gut microbial composition, diet and cardiometabolic health, in the ZOE PREDICT 1 cohort

scientific article published on 2 August 2023

Expression profiling of archival tumors for long-term health studies

scientific article

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions

scientific article published in November 2023

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

scientific article published on 17 January 2019

Faecal microbiota transplantation for the treatment of diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal cell carcinoma

scientific article published on 28 August 2020

Genome Sequence of Pseudomonas aeruginosa PA45, a Highly Virulent Strain Isolated from a Patient with Bloodstream Infection

scientific article published on 23 May 2013

Genomic and metagenomic insights into the microbial community of a thermal spring

scientific article published on 23 January 2019

Genomic characterization of Nontuberculous Mycobacteria

scientific article published on 27 March 2017

Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly

scientific article published in 2021

Gut Bacteria Composition Drives Primary Resistance to Cancer Immunotherapy in Renal Cell Carcinoma Patients

scientific article published on 03 May 2020

Gut Microbiome: Westernization and the Disappearance of Intestinal Diversity

scientific article published on July 2015

Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission

scientific article

Gut vascular barrier impairment leads to intestinal bacteria dissemination and colorectal cancer metastasis to liver

HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor

scientific article published on 01 June 2019

HMP16SData: Efficient Access to the Human Microbiome Project through Bioconductor

Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period

scientific article published on 13 October 2021

High intake of vegetables is linked to lower white blood cell profile and the effect is mediated by the gut microbiome

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED.

scientific article published on 18 December 2015

Host and gut microbiota symbiotic factors: lessons from inflammatory bowel disease and successful symbionts

scientific article

How inoculation affects the development and the performances of microalgal-bacterial consortia treating real municipal wastewater

scientific article published on 13 March 2020

Human postprandial responses to food and potential for precision nutrition

scientific article published on 11 June 2020

Initial exploration of in utero microbial colonization

scientific article published on 30 March 2020

Integrating Metagenomic Information into Personalized Nutrition Tools: The PREDICT I Study (P20-005-19)

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

Intestinal microbiota influences clinical outcome and side effects of early breast cancer treatment

scientific article published on 07 May 2021

Ketogenic diet and ketone bodies enhance the anticancer effects of PD1 blockade

scientific article published on 15 December 2020

Large Inter-individual Variation in Postprandial Lipemia Following a Mixed Meal in over 1000 Twins and Singletons from the UK and US: The PREDICT I Study (OR19-06-19)

scientific article published on 13 June 2019

Large scale genome reconstructions illuminate Wolbachia evolution

scientific article published on 16 October 2020

Large-Scale Phylogenomics of the Lactobacillus casei Group Highlights Taxonomic Inconsistencies and Reveals Novel Clade-Associated Features

scientific article published on July 2017

Large-scale comparative metagenomics of Blastocystis, a common member of the human gut microbiome

scientific article published on 22 August 2017

Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome

scientific article published on 25 May 2020

Local SVM approaches for fast and accurate classification of remote-sensing images

Long-adapter single-strand oligonucleotide probes for the massively multiplexed cloning of kilobase genome regions

article published in 2017

Longitudinal survey of microbiome associated with particulate matter in a megacity

scientific article published on 03 March 2020

Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights

scientific article

Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission

scientific article

Meal-induced inflammation: postprandial insights from the Personalised REsponses to DIetary Composition Trial (PREDICT) study in 1000 participants

Menopause is associated with postprandial metabolism, metabolic health and lifestyle: The ZOE PREDICT study

scientific article published in November 2022

Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer

scientific article published on 01 April 2019

MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples

scientific article

MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice

scientific article published on 30 May 2023

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

article published in 2015

MetaRef: a pan-genomic database for comparative and community microbial genomics

scientific article

Metabolic reconstruction for metagenomic data and its application to the human microbiome

scientific article published in 2012

Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants

scientific article

Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter

scientific article

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

scientific article published on 01 April 2019

Metagenomic biomarker discovery and explanation

scientific article published on 24 June 2011

Metagenomic microbial community profiling using unique clade-specific marker genes

scientific article

Methicillin-resistant Staphylococcus aureus eradication in cystic fibrosis patients: A randomized multicenter study

scientific article published on 22 March 2019

Microbial co-occurrence relationships in the human microbiome

scientific article

Microbial community function and biomarker discovery in the human microbiome

scientific article published on 19 September 2011

Microbial community function and biomarker discovery in the human microbiome

Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

scientific article published on 28 December 2019

Microbial strain-level population structure and genetic diversity from metagenomes

scientific article published on 06 February 2017

Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

Microbiota-gut brain axis involvement in neuropsychiatric disorders

scientific article published on 11 July 2019

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

article

Multiple levels of the unknown in microbiome research.

scientific article published on 12 June 2019

Neonatal antibiotic exposure impairs child growth during the first six years of life by perturbing intestinal microbial colonization

scientific article

No bacteria found in healthy placentas

scientific article published on 01 August 2019

Noise reduction for instance-based learning with a local maximal margin approach

article by Nicola Segata et al published 20 August 2009 in Journal of Intelligent Information Systems

On the Road to Strain-Resolved Comparative Metagenomics.

scientific article

Operators for transforming kernels into quasi-local kernels that improve SVM accuracy

article

Personalised REsponses to DIetary Composition Trial (PREDICT): an intervention study to determine inter-individual differences in postprandial response to foods

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

scientific article

Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea

scientific article published on 02 December 2019

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.

scientific article published on 19 May 2020

Predicting Personal Metabolic Responses to Food Using Multi-omics Machine Learning in over 1000 Twins and Singletons from the UK and US: The PREDICT I Study (OR31-01-19)

scholarly article by Sarah Berry et al published 13 June 2019 in CURRENT DEVELOPMENTS IN NUTRITION

Prevotella diversity, niches and interactions with the human host

scientific article published in 2021

Profiling instances in noise reduction

article by Sarah Jane Delany et al published July 2012 in Knowledge-Based Systems

Profiling microbial strains in urban environments using metagenomic sequencing data.

scientific article published on 9 May 2018

Publisher Correction: Human postprandial responses to food and potential for precision nutrition

scientific article published on 20 October 2020

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies

scientific article published in 2023

Reconstruction of ancient microbial genomes from the human gut

scientific article published on 12 May 2021

Relating the metatranscriptome and metagenome of the human gut.

scientific article

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 August 2019

SARS-CoV-2 from faeces to wastewater treatment: What do we know? A review

scientific article published on 24 June 2020

Selective maternal seeding and environment shape the human gut microbiome

scientific article published in March 2018

Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES

scientific article published on 19 December 2020

Shotgun metagenomics, from sampling to analysis

scientific article published on September 2017

Simultaneous quantification of multiple bacteria by the BactoChip microarray designed to target species-specific marker genes

scientific article

Snack quality and snack timing are associated with cardiometabolic blood markers: the ZOE PREDICT study

scientific article published on 15 September 2023

Sociodemographic variation in the oral microbiome

scientific article published on 08 May 2019

Species-level functional profiling of metagenomes and metatranscriptomes

scholarly article by Eric A Franzosa published in October 2018

Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life

article

Strain-level microbial epidemiology and population genomics from shotgun metagenomics

scientific article

Strong oral plaque microbiome signatures for dental implant diseases identified by strain-resolution metagenomics

scientific article published on 30 October 2020

Structure, function and diversity of the healthy human microbiome

scientific article

Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling

scientific article published on 17 January 2017

Sulfoquinovose is a select nutrient of prominent bacteria and a source of hydrogen sulfide in the human gut

scientific article published on 31 March 2021

The Microbe Directory: An annotated, searchable inventory of microbes' characteristics

scientific article published on 05 January 2018

The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

scientific article published on 10 October 2019

The Signal and the Noise: Characteristics of Antisense RNA in Complex Microbial Communities

scientific article published on 11 February 2020

The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment

scientific article

The new phylogenesis of the genus Mycobacterium

scientific article published in 2015

The new phylogeny of the genus Mycobacterium: The old and the news.

scientific article published on 10 October 2017

The personalized temporal dynamics of microbiome in the airways of cystic fibrosis patients

scholarly article published 15 April 2019

The reproductive tracts of two malaria vectors are populated by a core microbiome and by gender- and swarm-enriched microbial biomarkers

scientific article

The short-term impact of probiotic consumption on the oral cavity microbiome.

scientific article published on 11 July 2018

Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study

scientific article published on 28 March 2019

Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study

Toward an Efficient Method of Identifying Core Genes for Evolutionary and Functional Microbial Phylogenies ⬇️

scientific article published on September 12, 2011

Towards the integration of computational systems biology and high-throughput data: supporting differential analysis of microarray gene expression data

scientific article

Trial watch : the gut microbiota as a tool to boost the clinical efficacy of anticancer immunotherapy

scientific article published on 03 June 2020

Two-stage microbial community experimental design

scientific article published on 15 August 2013

Uncovering oral Neisseria tropism and persistence using metagenomic sequencing

scientific article

Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

scientific article

Untargeted Metagenomic Investigation of the Airway Microbiome of Cystic Fibrosis Patients with Moderate-Severe Lung Disease

scientific article published on 04 July 2020

Variation and transmission of the human gut microbiota across multiple familial generations

scientific article published on 30 December 2021

Waldron et al. Reply to “Commentary on the HMP16SData Bioconductor Package”

scientific article published on 01 June 2019

Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital

scholarly article by Serena Manara published in November 2018

bioBakery: A meta'omic analysis environment

scientific article published in April 2018

List of works by Nicola Segata

A Different Microbiome Gene Repertoire in the Airways of Cystic Fibrosis Patients with Severe Lung Disease

A Scalable Noise Reduction Technique for Large Case-Based Systems

A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity

A framework for human microbiome research

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets

A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy

A unified catalog of 204,938 reference genomes from the human gut microbiome

Abstracts from the 23rd Italian congress of Cystic Fibrosis and the 13th National congress of Cystic Fibrosis Italian Society: Naples, Italy. 22-25 November 2017

Accessible, curated metagenomic data through ExperimentHub.

Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

At the forefront of the sequencing revolution-notes from the RNGS19 conference.

Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut

Biodiversity and functional genomics in the human microbiome

Blue poo: impact of gut transit time on the gut microbiome using a novel marker ⬇️

Building essential biodiversity variables (EBVs) of species distribution and abundance at a global scale

Characterization of 17 strains belonging to the Mycobacterium simiae complex and description of Mycobacterium paraense sp. nov.

Clinical populations of Pseudomonas aeruginosa isolated from acute infections show a wide virulence range partially correlated with population structure and virulence gene expression

CoCas9 is a compact nuclease from the human microbiome for efficient and precise genome editing

Compact graphical representation of phylogenetic data and metadata with GraPhlAn

Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples

Computational Tools for Taxonomic Microbiome Profiling of Shotgun Metagenomes

Computational meta'omics for microbial community studies

Consumer Safety Considerations of Skin and Oral Microbiome Perturbation

Correction for Pinto et al., "Draft Genome Sequences of Novel Pseudomonas, Flavobacterium, and Sediminibacterium Strains from a Freshwater Ecosystem".

Correction for Tarallo et al., "Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples"

Corrigendum: Shotgun metagenomics, from sampling to analysis

Critical Assessment of Metagenome Interpretation: the second round of challenges

Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma

Cross-reactivity between tumor MHC class I-restricted antigens and an enterococcal bacteriophage

Dental Implants with Anti-Biofilm Properties: A Pilot Study for Developing a New Sericin-Based Coating

Detecting contamination in viromes using ViromeQC

Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets

Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates

Draft Genome Sequence of the Cadmium-Resistant Strain JJU2, Belonging to the Family Hapalosiphonaceae of the Cyanobacteria

Draft Genome Sequence of the Planktic Cyanobacterium Tychonema bourrellyi, Isolated from Alpine Lentic Freshwater

Draft Genome Sequences of Novel Pseudomonas, Flavobacterium, and Sediminibacterium Species Strains from a Freshwater Ecosystem

Draft genome sequence of the anatoxin-a producing cyanobacterium <i>Tychonema bourrellyi</i> B0820 isolated from the epilimnion of the deep Alpine Lake Garda

Effect of Gluten-Free Diet on Gut Microbiota Composition in Patients with Celiac Disease and Non-Celiac Gluten/Wheat Sensitivity

Effects of a personalized nutrition program on cardiometabolic health: a randomized controlled trial

Endogenous murine microbiota member Faecalibaculum rodentium and its human homologue protect from intestinal tumour growth

Enhanced microbial diversity in the saliva microbiome induced by short-term probiotic intake revealed by 16S rRNA sequencing on the IonTorrent PGM platform

Erratum: MetaPhlAn2 for enhanced metagenomic taxonomic profiling

Establishment of a non-Westernized gut microbiota in men who have sex with men is associated with sexual practices

Evaluation of bifidobacterial community composition in the human gut by means of a targeted amplicon sequencing (ITS) protocol

Evidence of natural Wolbachia infections in field populations of Anopheles gambiae

Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis

Experimental metagenomics and ribosomal profiling of the human skin microbiome

Exploring Vertical Transmission of Bifidobacteria from Mother to Child

Exploring the relationship between social jetlag with gut microbial composition, diet and cardiometabolic health, in the ZOE PREDICT 1 cohort

Expression profiling of archival tumors for long-term health studies

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

Faecal microbiota transplantation for the treatment of diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal cell carcinoma

Genome Sequence of Pseudomonas aeruginosa PA45, a Highly Virulent Strain Isolated from a Patient with Bloodstream Infection

Genomic and metagenomic insights into the microbial community of a thermal spring

Genomic characterization of Nontuberculous Mycobacteria

Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly

Gut Bacteria Composition Drives Primary Resistance to Cancer Immunotherapy in Renal Cell Carcinoma Patients

Gut Microbiome: Westernization and the Disappearance of Intestinal Diversity

Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission

Gut vascular barrier impairment leads to intestinal bacteria dissemination and colorectal cancer metastasis to liver

HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor

HMP16SData: Efficient Access to the Human Microbiome Project through Bioconductor

Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period

High intake of vegetables is linked to lower white blood cell profile and the effect is mediated by the gut microbiome

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED.

Host and gut microbiota symbiotic factors: lessons from inflammatory bowel disease and successful symbionts

How inoculation affects the development and the performances of microalgal-bacterial consortia treating real municipal wastewater

Human postprandial responses to food and potential for precision nutrition

Initial exploration of in utero microbial colonization

Integrating Metagenomic Information into Personalized Nutrition Tools: The PREDICT I Study (P20-005-19)

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

Intestinal microbiota influences clinical outcome and side effects of early breast cancer treatment

Ketogenic diet and ketone bodies enhance the anticancer effects of PD1 blockade

Large Inter-individual Variation in Postprandial Lipemia Following a Mixed Meal in over 1000 Twins and Singletons from the UK and US: The PREDICT I Study (OR19-06-19)