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List of works by Shaun Jackman

A robust benchmark for detection of germline large deletions and insertions

scientific article published on 15 June 2020

ABySS-Explorer: visualizing genome sequence assemblies

scientific article published on 01 November 2009

ABySS: a parallel assembler for short read sequence data

scientific article (publication date: June 2009)

Assemblathon 1: a competitive assessment of de novo short read assembly methods

scientific article

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

scientific article

Assembling genomes using short-read sequencing technology.

scientific article published on 28 January 2010

Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics' GemCode Sequencing Data.

scientific article

Author Correction: A robust benchmark for detection of germline large deletions and insertions

scientific article published on 22 July 2020

Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies

scientific article

BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters.

scientific article

DIDA: Distributed Indexing Dispatched Alignment.

scientific article published on 29 April 2015

De novo assembly and analysis of RNA-seq data.

scientific article

De novo transcriptome assembly with ABySS.

scientific article

Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest

scientific article

Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma

scientific article

Genome sequence of Mycoplasma capricolum subsp. capripneumoniae strain M1601.

scientific article

Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism

scientific article published on 28 May 2015

KLEAT: CLEAVAGE SITE ANALYSIS OF TRANSCRIPTOMES

article published in 2014

Konnector v2.0: pseudo-long reads from paired-end sequencing data

scientific article

Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph

On the Representation of de Bruijn Graphs

scientific article from Lecture Notes in Computer Science

On the representation of de Bruijn graphs

scientific article published on 28 January 2015 from Journal of Computational Biology

Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation

scientific article published on 8 December 2015

Sealer: a scalable gap-closing application for finishing draft genomes.

scientific article published on 25 July 2015

Spaced Seed Data Structures for De Novo Assembly.

scientific article

Spaced seed data structures

Subgroup-specific structural variation across 1,000 medulloblastoma genomes

scientific article

The Genome of the Steller Sea Lion (Eumetopias jubatus)

scientific article published on 26 June 2019

The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera

scientific article

Tigmint: correcting assembly errors using linked reads from large molecules

scientific article published on 26 October 2018

UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation

scientific article published on 28 May 2015

UniqTag: Content-derived unique and stable identifiers for gene annotation

article

Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees

scientific article

Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii

scientific article published in 2013

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