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List of works by Bouke C de Jong

A Genomic Approach to Resolving Relapse versus Reinfection among Four Cases of Buruli Ulcer.

scientific article published on 30 November 2015

A Mycobacterial Perspective on Tuberculosis in West Africa: Significant Geographical Variation of M. africanum and Other M. tuberculosis Complex Lineages

scientific article

A four-month gatifloxacin-containing regimen for treating tuberculosis

scientific article

A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region

scientific article published on 09 June 2020

A tuberculosis nationwide prevalence survey in Gambia, 2012.

scientific article published on 21 April 2016

Acquired resistance of Mycobacterium tuberculosis to bedaquiline

scientific article (publication date: 2014)

Adaptation of Mycobacterium tuberculosis to Impaired Host Immunity in HIV-Infected Patients

scientific article published on 17 August 2016

AdvISER-PYRO: Amplicon Identification using SparsE Representation of PYROsequencing signal

scientific article published on 14 June 2013

An operational study comparing microscopes and staining variations for tuberculosis LED FM.

scientific article

Analysis of flow cytometry data using an automatic processing tool

scientific article published in September 2008

Bacterial diversity in Buruli ulcer skin lesions: Challenges in the clinical microbiome analysis of a skin disease

scientific article published on 27 July 2017

Bedaquiline susceptibility testing of Mycobacterium tuberculosis in an automated liquid culture system

scientific article published on 14 May 2015

Burden of Mycobacterium ulcerans disease (Buruli ulcer) and the underreporting ratio in the territory of Songololo, Democratic Republic of Congo

scientific article published in 2013

Buruli ulcer in the health districts of the Democratic Republic of Congo from 1950 to 2013: literature review and new distribution map

scientific article published in October 2014

Buruli ulcer in traveler from Suriname, South America, to the Netherlands

scientific article

Catch Them While You Can!

scientific article published in July 2008

Characterization of anticapsular monoclonal antibodies that regulate activation of the complement system by the Cryptococcus neoformans capsule

scientific article

Clinical management of tuberculosis in the context of HIV infection

scientific article published on January 2004

Clinical presentation and outcome of tuberculosis patients infected by M. africanum versus M. tuberculosis.

scientific article published in April 2007

Comparative evaluation of BACTEC MGIT 960 with BACTEC 9000 MB and LJ for isolation of mycobacteria in The Gambia

scientific article

Correction: Deciphering the Growth Behaviour of Mycobacterium africanum.

scientific article published on 11 June 2013

Correction: Whole Genome Comparisons Suggest Random Distribution of Mycobacterium ulcerans Genotypes in a Buruli Ulcer Endemic Region of Ghana

scientific article published on 13 May 2015

Correlation of different phenotypic drug susceptibility testing methods for four fluoroquinolones in Mycobacterium tuberculosis

scientific article published on 6 February 2016

Deciphering the growth behaviour of Mycobacterium africanum

scientific article

Decontamination methods for samples preserved in cetylpyridinium chloride and cultured on thin-layer agar

scientific article published on August 2014

Deep amplicon sequencing for culture-free prediction of susceptibility or resistance to 13 anti-tuberculous drugs ⬇️

scientific article published on 17 September 2020

Differences between tuberculosis cases infected with Mycobacterium africanum, West African type 2, relative to Euro-American Mycobacterium tuberculosis: an update

scientific article

Differences in T-cell responses between Mycobacterium tuberculosis and Mycobacterium africanum-infected patients

scientific article published on 20 February 2014

Disputed rpoB mutations can frequently cause important rifampicin resistance among new tuberculosis patients

scientific article published on February 2015

Do Xpert MTB/RIF Cycle Threshold Values Provide Information about Patient Delays for Tuberculosis Diagnosis?

scientific article published in 2016

Does resistance to pyrazinamide accurately indicate the presence of Mycobacterium bovis?

scientific article published on July 2005

Effect of a control project on clinical profiles and outcomes in buruli ulcer: a before/after study in Bas-Congo, Democratic Republic of Congo

scientific article

Effects of cryopreservation on CD4+ CD25+ T cells of HIV-1 infected individuals.

scientific article published on January 2008

Emergence and clonal transmission of multi-drug-resistant tuberculosis among patients in Chad

scientific article published on 22 August 2017

Examining human paragonimiasis as a differential diagnosis to tuberculosis in The Gambia

scientific article published on 15 January 2018

Extensively drug resistant tuberculosis in Mali: a case report

scientific article

Factors associated with mortality in patients with drug-susceptible pulmonary tuberculosis.

scientific article

First insights into circulating Mycobacterium tuberculosis complex lineages and drug resistance in Guinea

scientific article published on 21 May 2015

Fluorescein diacetate vital staining allows earlier diagnosis of rifampicin-resistant tuberculosis

scientific article published on 28 June 2012

GeneXpert MTB/RIF Assay for the Diagnosis of Tuberculous Lymphadenitis on Concentrated Fine Needle Aspirates in High Tuberculosis Burden Settings

scientific article published on 14 September 2015

Genetic variability of Mycobacterium tuberculosis complex in patients with no known risk factors for MDR-TB in the North-Eastern part of Lima, Peru

scientific article

Genotypic characterization directly applied to sputum improves the detection of Mycobacterium africanum West African 1, under-represented in positive cultures.

scientific article published in September 2017

HIV prevention fatigue among high-risk populations in San Francisco

scientific article published in April 2004

Half of rifampicin-resistant Mycobacterium tuberculosis complex isolated from tuberculosis patients in Sub-Saharan Africa have concomitant resistance to pyrazinamide

scientific article published on 31 October 2017

High Genotypic Discordance of Concurrent Mycobacterium tuberculosis Isolates from Sputum and Blood of HIV-Infected Individuals

scientific article published on 15 July 2015

High rifampicin-resistant TB cure rates and prevention of severe ototoxicity after replacing the injectable by linezolid in early stage of hearing loss

scientific article published on 23 July 2020

Identification of probable early-onset biomarkers for tuberculosis disease progression

scientific article

Immune reconstitution inflammatory syndrome and the influence of T regulatory cells: a cohort study in The Gambia

scientific article

Immunogenic Mycobacterium africanum strains associated with ongoing transmission in The Gambia

scientific article published on October 2013

Immunogenicity of antigens from the TbD1 region present in M. africanum and missing from "modern" M. tuberculosis: a cross- sectional study

scientific article

Impact of the Mycobaterium africanum West Africa 2 Lineage on TB Diagnostics in West Africa: Decreased Sensitivity of Rapid Identification Tests in The Gambia

scientific article

Impaired fitness of Mycobacterium africanum despite secretion of ESAT-6

scientific article published on February 2012

Incidence of tuberculosis and the predictive value of ELISPOT and Mantoux tests in Gambian case contacts

scientific article

Infection with Helicobacter pylori is associated with protection against tuberculosis

scientific article

Insertion sequence element single nucleotide polymorphism typing provides insights into the population structure and evolution of Mycobacterium ulcerans across Africa

research work

Leprosy and Buruli ulcer: similarities suggest combining control and prevention of disability strategies in countries endemic for both diseases.

scientific article

Longitudinal assessment of an ELISPOT test for Mycobacterium tuberculosis infection

scientific article published in June 2007

M. tuberculosis T Cell Epitope Analysis Reveals Paucity of Antigenic Variation and Identifies Rare Variable TB Antigens

scientific article published on 21 October 2015

Marijuana use and its association with adherence to antiretroviral therapy among HIV-infected persons with moderate to severe nausea

scientific article published in January 2005

Multicenter external quality assessment program for PCR detection of Mycobacterium ulcerans in clinical and environmental specimens

scientific article

Multiple Introductions and Recent Spread of the Emerging Human Pathogen Mycobacterium ulcerans across Africa ⬇️

scientific article

Mycobacterium africanum elicits an attenuated T cell response to early secreted antigenic target, 6 kDa, in patients with tuberculosis and their household contacts.

scientific article

Mycobacterium africanum--review of an important cause of human tuberculosis in West Africa

scientific article

Mycobacterium africanum: a new opportunistic pathogen in HIV infection?

scientific article published in October 2005

Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages

scientific article published on 31 October 2016

Mycobacterium tuberculosis precursor rRNA as a measure of treatment-shortening activity of drugs and regimens

scientific article published on 18 May 2021

Mycobacterium ulcerans disease (Buruli ulcer) in Gabon: 2005-2011

scientific article published in October 2013

Potential Application of Digitally Linked Tuberculosis Diagnostics for Real-Time Surveillance of Drug-Resistant Tuberculosis Transmission: Validation and Analysis of Test Results

scientific article published on 27 February 2018

Predominant Mycobacterium tuberculosis Families and High Rates of Recent Transmission among New Cases Are Not Associated with Primary Multidrug Resistance in Lima, Peru

scientific article published on 25 March 2015

Production of TNF-alpha, IL-12(p40) and IL-17 can discriminate between active TB disease and latent infection in a West African cohort

scientific article

Progression to active tuberculosis, but not transmission, varies by Mycobacterium tuberculosis lineage in The Gambia

scientific article published on October 2008

Pseudo-outbreak of pre-extensively drug-resistant (Pre-XDR) tuberculosis in Kinshasa: collateral damage caused by false detection of fluoroquinolone resistance by GenoType MTBDRsl ⬇️

scientific article

Relatively low primary drug resistant tuberculosis in southwestern Ethiopia

scientific article published on 10 May 2012

Rifampin drug resistance tests for tuberculosis: challenging the gold standard

scientific article published on 12 June 2013

Rifampin resistance missed in automated liquid culture system for Mycobacterium tuberculosis isolates with specific rpoB mutations

scientific article published on 12 June 2013

Rising ELISPOT count prior to the onset of symptoms of full-blown tuberculosis disease.

scientific article published in March 2007

Significant under expression of the DosR regulon in M. tuberculosis complex lineage 6 in sputum

scientific article published on 4 March 2017

Single nucleotide variation catalog from clinical isolates mapped on tertiary and quaternary structures of ESX-1-related proteins reveals critical regions as putative Mtb therapeutic targets

scientific article published in 2024

Skewing of the CD4(+) T-cell pool toward monofunctional antigen-specific responses in patients with immune reconstitution inflammatory syndrome in The Gambia

scientific article published on 3 May 2013

Some Synonymous and Nonsynonymous gyrA Mutations in Mycobacterium tuberculosis Lead to Systematic False-Positive Fluoroquinolone Resistance Results with the Hain GenoType MTBDRsl Assays

scientific article published on 30 January 2017

Specific gyrA gene mutations predict poor treatment outcome in MDR-TB.

scientific article published on 24 November 2015

Sputum is a surrogate for bronchoalveolar lavage for monitoring Mycobacterium tuberculosis transcriptional profiles in TB patients

scientific article published on 25 July 2016

Supervised learning for the automated transcription of spacer classification from spoligotype films

scientific article published on 12 August 2009

Targeting multidrug-resistant tuberculosis (MDR-TB) by therapeutic vaccines

scientific article

The TDR Tuberculosis Strain Bank: a resource for basic science, tool development and diagnostic services

scientific article

The emerging threat of pre-extensively drug-resistant tuberculosis in West Africa: preparing for large-scale tuberculosis research and drug resistance surveillance

scientific article

The first phylogeographic population structure and analysis of transmission dynamics of M. africanum West African 1--combining molecular data from Benin, Nigeria and Sierra Leone

scientific article

The genome of Mycobacterium africanum West African 2 reveals a lineage-specific locus and genome erosion common to the M. tuberculosis complex

scientific article published on 28 February 2012

The majority of patients with multidrug-resistant tuberculosis in Sub-Saharan Africa present a concomitant resistance to pyrazinamide

scientific article published on 27 October 2016

The predominance of Ethiopian specific Mycobacterium tuberculosis families and minimal contribution of Mycobacterium bovis in tuberculous lymphadenitis patients in Southwest Ethiopia

scientific article published on 15 September 2017

The thin-layer agar method for direct phenotypic detection of multi- and extensively drug-resistant tuberculosis

scientific article published on December 2015

Transcriptional Adaptation of Drug-tolerant Mycobacterium tuberculosis During Treatment of Human Tuberculosis

scientific article

Treatment outcomes of patients with HIV and tuberculosis.

scientific article published on 8 February 2007

Unexpected high prevalence of resistance-associated Rv0678 variants in MDR-TB patients without documented prior use of clofazimine or bedaquiline

scientific article published on 28 December 2016

Use of RODAC plates to measure containment of Mycobacterium tuberculosis in a Class IIB biosafety cabinet during routine operations

scientific article published on 17 February 2016

Use of spoligotyping and large sequence polymorphisms to study the population structure of the Mycobacterium tuberculosis complex in a cohort study of consecutive smear-positive tuberculosis cases in The Gambia

scientific article published on 04 February 2009

Using ELISPOT to expose false positive skin test conversion in tuberculosis contacts

scientific article

Variable host-pathogen compatibility in Mycobacterium tuberculosis

scientific article (publication date: 21 February 2006)

Whole Genome Comparisons Suggest Random Distribution of Mycobacterium ulcerans Genotypes in a Buruli Ulcer Endemic Region of Ghana

scientific article

Whole genome sequencing reveals mycobacterial microevolution among concurrent isolates from sputum and blood in HIV infected TB patients

scientific article published on 5 August 2016

Whole genome sequencing to complement tuberculosis drug resistance surveys in Uganda

scientific article published on 22 February 2016

Whole-genome sequencing illuminates the evolution and spread of multidrug-resistant tuberculosis in Southwest Nigeria.

scientific article published on 19 September 2017

Xpert Ultra Can Unambiguously Identify Specific Rifampin Resistance-Conferring Mutations

scientific article published on 27 August 2018

[Peer review: is one-eye king?]

scientific article published on 01 January 1993

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