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List of works by Ian T. Paulsen

A Sample-to-Sequence Protocol for Genus Targeted Transcriptomic Profiling: Application to Marine Synechococcus.

scientific article published on 14 October 2016

A Transcriptomic Approach to Identify Novel Drug Efflux Pumps in Bacteria

scientific article

A bacterial model system for understanding multi-drug resistance

scientific article published on January 1997

A broad-specificity multidrug efflux pump requiring a pair of homologous SMR-type proteins

scientific article

A family of gram-negative bacterial outer membrane factors that function in the export of proteins, carbohydrates, drugs and heavy metals from gram-negative bacteria

scientific article published on November 1997

A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database

scientific article

A high efficiency cloning and expression system for proteomic analysis

scientific article published on July 2006

A novel family of genomic resistance islands, AbGRI2, contributing to aminoglycoside resistance in Acinetobacter baumannii isolates belonging to global clone 2.

scientific article published on 20 November 2012

A novel family of integrases associated with prophages and genomic islands integrated within the tRNA-dihydrouridine synthase A (dusA) gene.

scientific article published on 16 April 2015

A novel family of ubiquitous heavy metal ion transport proteins

scientific article

A synthesis of bacterial and archaeal phenotypic trait data

scientific article published on 05 June 2020

Addition of Escherichia coli K-12 growth observation and gene essentiality data to the EcoCyc database

scientific article

Adherence and motility characteristics of clinical Acinetobacter baumannii isolates

scientific article published on 09 August 2011

An ace up their sleeve: a transcriptomic approach exposes the AceI efflux protein of Acinetobacter baumannii and reveals the drug efflux potential hidden in many microbial pathogens ⬇️

scientific article published on 22 April 2015

Analysis of a transfer region from the staphylococcal conjugative plasmid pSK41.

scientific article published in December 1993

Analysis of two marine metagenomes reveals the diversity of plasmids in oceanic environments

scientific article

Annotation-based inference of transporter function

scientific article published on July 2008

Antibiotic discovery: combatting bacterial resistance in cells and in biofilm communities.

scientific article published on 24 March 2015

Application of exonuclease III-aided target recycling in flow cytometry: DNA detection sensitivity enhanced by orders of magnitude

scientific article

Bacillus cereus efflux protein BC3310 - a multidrug transporter of the unknown major facilitator family, UMF-2. ⬇️

scientific article published on 12 October 2015

Bacterial subfamily of LuxR regulators that respond to plant compounds

scientific article

Benchmarking two Saccharomyces cerevisiae laboratory strains for growth and transcriptional response to methanol

scientific article published on 16 October 2019

Bioenergetics of the staphylococcal multidrug export protein QacA. Identification of distinct binding sites for monovalent and divalent cations.

scientific article

Biolog Phenotype MicroArrays for Phenotypic Characterization of Microbial Cells

scientific article published on 01 January 2014

Blueprints for Biosensors: Design, Limitations, and Applications

article

Carbon metabolism and its regulation in Streptomyces and other high GC gram-positive bacteria

scientific article

Catabolism of Nucleic Acids by a Cystic Fibrosis Pseudomonas aeruginosa Isolate: An Adaptive Pathway to Cystic Fibrosis Sputum Environment

scientific article published on 31 May 2019

Cereal products derived from wheat, sorghum, rice and oats alter the infant gut microbiota in vitro.

scientific article published on 30 October 2017

Changes in dietary fiber intake in mice reveal associations between colonic mucin O-glycosylation and specific gut bacteria

scientific article published on 01 November 2020

Characterisation of sin, a potential recombinase-encoding gene from Staphylococcus aureus

scientific article published in April 1994

Characterization and Vaccine Potential of Membrane Vesicles Produced by Francisella noatunensis subsp. orientalis in an Adult Zebrafish Model

scientific article

Characterizing the Mechanism of Action of an Ancient Antimicrobial, Manuka Honey, against Pseudomonas aeruginosa Using Modern Transcriptomics

scientific article published on 30 June 2020

Chromosome-scale assembly of the streamlined picoeukaryote Picochlorum sp. SENEW3 genome reveals Rabl-like chromatin structure and potential for C4 photosynthesis

scientific article published in 2024

Cloning, expression, and purification of Brucella suis outer membrane proteins

scientific article

Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity

scientific article published on February 2009

Coastal strains of marine Synechococcus species exhibit increased tolerance to copper shock and a distinctive transcriptional response relative to those of open-ocean strains

scientific article published on 05 June 2009

Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii

scientific article

Community-acquired Acinetobacter baumannii: clinical characteristics, epidemiology and pathogenesis.

scientific article published on May 2015

Comparative Analysis of Membrane Vesicles from Three Piscirickettsia salmonis Isolates Reveals Differences in Vesicle Characteristics

scientific article

Comparative analyses of fundamental differences in membrane transport capabilities in prokaryotes and eukaryotes

scientific article

Comparative analysis of surface-exposed virulence factors of Acinetobacter baumannii

scientific article

Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris

scientific article

Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus

scientific article

Comparative genomics of microbial drug efflux systems.

scientific article

Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions

scientific article

Comparative genomics of the neglected human malaria parasite Plasmodium vivax

scientific article

Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes

scientific article

Complete Genome Sequence of the Oral Pathogenic Bacterium Porphyromonas gingivalis Strain W83.

scientific article published in January 2004

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

scientific article

Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae

scientific article

Complete genome sequence of Caulobacter crescentus

scientific article

Complete genome sequence of the Q-fever pathogen Coxiella burnetii

scientific article

Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage

scientific article

Complete genome sequence of the multiresistant taxonomic outlier Pseudomonas aeruginosa PA7.

scientific article

Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83

scientific article

Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5

scientific article

Complete sequence of pJIE143, a pir-type plasmid carrying ISEcp1-blaCTX-M-15 from an Escherichia coli ST131 isolate

scientific article published on 12 September 2011

Composite genome map and recombination parameters derived from three archetypal lineages of Toxoplasma gondii

scientific article

Computational inference and experimental validation of the nitrogen assimilation regulatory network in cyanobacterium Synechococcus sp. WH 8102.

scientific article

Computational prediction of the osmoregulation network in Synechococcus sp. WH8102.

scientific article

Construction of a synthetic Saccharomyces cerevisiae pan-genome neo-chromosome

Construction of a synthetic Saccharomyces cerevisiae pan-genome neo-chromosome

scientific article published on 24 June 2022

Contribution of target gene mutations and efflux to decreased susceptibility of Salmonella enterica serovar typhimurium to fluoroquinolones and other antimicrobials

scientific article published on 16 October 2006

Crystal Structure of an Integron Gene Cassette-Associated Protein from Vibrio cholerae Identifies a Cationic Drug-Binding Module

scientific article

Crystal structure of a UDP-GlcNAc epimerase for surface polysaccharide biosynthesis in Acinetobacter baumannii

scientific article published on 19 January 2018

Dead end metabolites--defining the known unknowns of the E. coli metabolic network

scientific article

Defining the microbial effluxome in the content of the host-microbiome interaction

scientific article published on 19 February 2015

Desulfuromonas sp. 'CSMB_57’, isolation and genomic insights from the most abundant bacterial taxon in eastern Australian coals

scientific article published in 2022

Development of a High-Throughput Cloning Strategy for Characterization of Acinetobacter baumannii Drug Transporter Proteins ⬇️

scientific article published on July 19, 2011

Disruption of Transporters Affiliated with Enantio-Pyochelin Biosynthesis Gene Cluster of Pseudomonas protegens Pf-5 Has Pleiotropic Effects

scientific article

Draft Genome Sequence of Bacillus alcalophilus AV1934, a Classic Alkaliphile Isolated from Human Feces in 1934

scientific article

Draft Genome of Australian Environmental Strain WM 09.24 of the Opportunistic Human Pathogen Scedosporium aurantiacum

scientific article

Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis

scientific article

Dual Transcriptomics of Host-Pathogen Interaction of Cystic Fibrosis Isolate PASS1 With Zebrafish

scientific article published on 22 November 2018

EcoCyc: a comprehensive database of Escherichia coli biology

scientific article

EcoCyc: a comprehensive database resource for Escherichia coli

scientific article

EcoCyc: a comprehensive view of Escherichia coli biology

scientific article published on 30 October 2008

EcoCyc: fusing model organism databases with systems biology

scientific article

Ecological effects of cefepime use during antibiotic cycling on the Gram-negative enteric flora of ICU patients

Ecological genomics of marine Roseobacters

scientific article published on 25 May 2007

Ecological genomics of marine picocyanobacteria

scientific article

Ecology and Evolution of the Human Microbiota: Fire, Farming and Antibiotics

scientific article

Effect of tannic acid on the transcriptome of the soil bacterium Pseudomonas protegens Pf-5

scientific article

Effects of low temperature on tropical and temperate isolates of marine Synechococcus

scientific article published on 23 October 2015

Effects of uranium concentration on microbial community structure and functional potential

scientific article

Elucidating essential genes in plant-associated <i>Pseudomonas protegens</i> Pf-5 using transposon insertion sequencing

scientific article published on 30 November 2020

Environmental genome shotgun sequencing of the Sargasso Sea

scientific article (publication date: 2 April 2004)

Enzyme I(Ntr) from Escherichia coli. A novel enzyme of the phosphoenolpyruvate-dependent phosphotransferase system exhibiting strict specificity for its phosphoryl acceptor, NPr.

scientific article published on September 1999

Erratum: Corrigendum: Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5

article

Erratum: Corrigendum: Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

scientific article published in Nature

Erratum: corrigendum: The genome sequence of Schizosaccharomyces pombe

scientific article published in Nature

Evolutionary engineering in reveals a -dependent potassium influx mechanism for propionic acid tolerance

Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic

scientific article

Fiber Supplements Derived From Sugarcane Stem, Wheat Dextrin and Psyllium Husk Have Different Effects on the Human Gut Microbiota

scientific article published on 20 July 2018

Fluorescence-Based Flow Sorting in Parallel with Transposon Insertion Site Sequencing Identifies Multidrug Efflux Systems in Acinetobacter baumannii

scientific article

Genes expressed by the biological control bacterium Pseudomonas protegens Pf-5 on seed surfaces under the control of the global regulators GacA and RpoS.

scientific article

Genetic identification of a high-affinity Ni transporter and the transcriptional response to Ni deprivation in Synechococcus sp. strain WH8102

scientific article

Genetically and Phenotypically Distinct Pseudomonas aeruginosa Cystic Fibrosis Isolates Share a Core Proteomic Signature

scientific article published on 2 October 2015

Genome Sequence of Theileria parva, a Bovine Pathogen That Transforms Lymphocytes

scientific article

Genome Sequence of the Group III Clostridium botulinum Strain Eklund-C.

scientific article published on 14 March 2013

Genome Sequence of the Neurotoxigenic Clostridium butyricum Strain 5521.

scientific article

Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria).

scholarly article

Genome degradation in Brucella ovis corresponds with narrowing of its host range and tissue tropism

scientific article

Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments

scientific article

Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4.

scientific article published on 27 September 2011

Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus

article

Genome sequence of Aedes aegypti, a major arbovirus vector

scientific article

Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes

scientific article published on 08 May 2009

Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa

scientific article published on 19 October 2007

Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae

scientific article

Genome sequence of Vibrio rotiferianus strain DAT722.

scientific article published on 6 May 2011

Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

scientific article

Genome sequence of the human malaria parasite Plasmodium falciparum

scientific article

Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319.

scientific article published on 24 June 2011

Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria

scientific article

Genome sequencing and analysis of Aspergillus oryzae

scientific article

Genome-based evolutionary history of Pseudomonas spp.

scientific article published on 6 April 2018

Genomic analyses of Clostridium perfringens isolates from five toxinotypes

scientific article

Genomic analysis reveals multiple [FeFe] hydrogenases and hydrogen sensors encoded by treponemes from the H(2)-rich termite gut.

scientific article

Genomic and phenotypic insights point to diverse ecological strategies by facultative anaerobes obtained from subsurface coal seams

scientific article published on 07 November 2019

Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath)

scientific article

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

scientific article

Genomics and the evolution of antibiotic resistance

scientific article published on 21 October 2016

Global Gene Expression Profile of Acinetobacter baumannii During Bacteremia

scientific article published on February 2017

Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

scientific article

H-NS plays a role in expression of Acinetobacter baumannii virulence features.

scientific article published on 06 May 2013

Harnessing bioengineered microbes as a versatile platform for space nutrition

Harnessing bioengineered microbes as a versatile platform for space nutrition

scientific article published on 19 October 2022

High-throughput phenotypic characterization of Pseudomonas aeruginosa membrane transport genes

scientific journal article

Homologs of the Acinetobacter baumannii AceI transporter represent a new family of bacterial multidrug efflux systems

scientific article

IS257-mediated cointegration in the evolution of a family of staphylococcal trimethoprim resistance plasmids

scientific article published on October 1996

Identification of Novel Host Fatty Acid Stress Adaptation Strategies

scientific article published in 2019

Identification of a Dichelobacter nodosus ferric uptake regulator and determination of its regulatory targets

scientific article

Impact of DNA damaging agents on genome-wide transcriptional profiles in two marine Synechococcus species

scientific article published on 16 August 2013

Inactivation of the GacA response regulator in Pseudomonas fluorescens Pf-5 has far-reaching transcriptomic consequences

article

Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic

scientific article published on 26 January 2012

Insights from the Genomes of Microbes Thriving in Uranium-Enriched Sediments

scientific article

Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicillin-Resistant Staphylococcus epidermidis Strain

scientific article

Insights on virulence from the complete genome of Staphylococcus capitis.

scientific article published on 23 September 2015

Interactions of an Emerging Fungal Pathogen Scedosporium aurantiacum with Human Lung Epithelial Cells

scientific article published on 22 March 2019

Investigation of the human pathogen Acinetobacter baumannii under iron limiting conditions ⬇️

scientific article published on February 23, 2011

Just one cross appears capable of dramatically altering the population biology of a eukaryotic pathogen like Toxoplasma gondii

scholarly article

Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism

scientific article published on March 2004

Life in the dark: metagenomic evidence that a microbial slime community is driven by inorganic nitrogen metabolism

scientific article

Long-Term Irrigation Affects the Dynamics and Activity of the Wheat Rhizosphere Microbiome.

scientific article

Maintenance of essential amino acid synthesis pathways in the Blattabacterium cuenoti symbiont of a wood-feeding cockroach

scientific article

Major facilitator superfamily

scientific article

Microarray analysis of phosphate regulation in the marine cyanobacterium Synechococcus sp. WH8102

article

Microbial communities are sensitive indicators for freshwater sediment copper contamination

scientific article published on 30 January 2019

Microbial drug efflux proteins of the major facilitator superfamily

scientific article published on July 2006

Microbial genome analyses: comparative transport capabilities in eighteen prokaryotes 1 1Edited by G. von Heijne

Microbial genome analyses: global comparisons of transport capabilities based on phylogenies, bioenergetics and substrate specificities

scientific article published in April 1998

Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5.

scientific article

Molecular characterization of the staphylococcal multidrug resistance export protein QacC

scientific article published on May 1995

Multidimensional annotation of the Escherichia coli K-12 genome

scientific article

Multidrug efflux pumps and resistance: regulation and evolution

scientific article published on October 2003

Multidrug resistance plasmid pSK108 from coagulase-negative staphylococci; relationships to Staphylococcus aureus qacC plasmids

scientific article published in July 1995

Multidrug resistance proteins QacA and QacB from Staphylococcus aureus: membrane topology and identification of residues involved in substrate specificity

scientific article published on April 1996

Multidrug resistance to antiseptics and disinfectants in coagulase-negative staphylococci

scientific article published on 01 March 1994

Navigating the Frontier of Synthetic Biology: An AI-Driven Analytics Platform for Exploring Research Trends and Relationships

Navigating the Frontier of Synthetic Biology: An AI-Driven Analytics Platform for Exploring Research Trends and Relationships

scientific article published on 30 August 2023

New glycoprotein-associated amino acid transporters

scientific article

Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics

scientific article

Novel functional insights into a modified sugar-binding protein from Synechococcus MITS9220

scientific article published on 21 March 2022

One-Step Protein Conjugation to Upconversion Nanoparticles

scientific article published on 2 October 2015

Pacing across the membrane: the novel PACE family of efflux pumps is widespread in Gram-negative pathogens. ⬇️

scientific article published in February 2018

Paralogous genes encoding transport proteins in microbial genomes

scientific article

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

scientific article

Phenotypic profiling of Scedosporium aurantiacum, an opportunistic pathogen colonizing human lungs

scientific article

Phylogenetic characterization of novel transport protein families revealed by genome analyses

scientific article

Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements

scientific article

Phylogeny of multidrug transporters

scientific article

Plastic leachates impair growth and oxygen production in , the ocean's most abundant photosynthetic bacteria

scientific article published on 14 May 2019

Proteomics of hosts and pathogens in cystic fibrosis

scientific article

Pseudomonas aeruginosa Cell Membrane Protein Expression from Phenotypically Diverse Cystic Fibrosis Isolates Demonstrates Host-Specific Adaptations

scientific article published in June 2016

Pseudomonas aeruginosa inhibits the growth of Scedosporium aurantiacum, an opportunistic fungal pathogen isolated from the lungs of cystic fibrosis patients

scientific article published on 24 August 2015

PtrA is required for coordinate regulation of gene expression during phosphate stress in a marine Synechococcus

scientific article published on 08 April 2010

QTL analysis of natural Saccharomyces cerevisiae isolates reveals unique alleles involved in lignocellulosic inhibitor tolerance

scientific article published on 01 August 2019

QacR is a repressor protein that regulates expression of the Staphylococcus aureus multidrug efflux pump QacA.

scientific article published in July 1998

RamA confers multidrug resistance in Salmonella enterica via increased expression of acrB, which is inhibited by chlorpromazine

scientific article published on 11 August 2008

Rapid microevolution of biofilm cells in response to antibiotics

scientific article published on 06 November 2019

Rapid multiplexed phenotypic screening identifies drug resistance functions for three novel efflux pumps in Acinetobacter baumannii

scientific article published on 31 January 2016

Rapid optimisation of cellulolytic enzymes ratios in Saccharomyces cerevisiae using in vitro SCRaMbLE

scientific article published on 03 November 2020

Reciprocal regulation of pyoluteorin production with membrane transporter gene expression in Pseudomonas fluorescens Pf-5.

scientific article

Regulation of carbon utilization by sulfur availability in Escherichia coli and Salmonella typhimurium.

scientific article published in January 2002

Regulation of the aceI multidrug efflux pump gene in Acinetobacter baumannii.

scientific article published on 21 February 2018

Regulation of type IV fimbrial biogenesis in Dichelobacter nodosus

scientific article

Resolving Low-Expression Cell Surface Antigens by Time-Gated Orthogonal Scanning Automated Microscopy

article published in 2012

Roles of DHA2 family transporters in drug resistance and iron homeostasis in Acinetobacter spp.

scientific article

Root Exudates Alter the Expression of Diverse Metabolic, Transport, Regulatory, and Stress Response Genes in Rhizosphere <i>Pseudomonas</i>

scientific article published on 14 April 2021

Screening of candidate substrates and coupling ions of transporters by thermostability shift assays ⬇️

scientific article published on 15 October 2018

SecDF as part of the Sec-translocase facilitates efficient secretion of Bacillus cereus toxins and cell wall-associated proteins

scientific article published in August 2014

Selection in coastal Synechococcus (cyanobacteria) populations evaluated from environmental metagenomes

scientific article

Sequences of two related multiple antibiotic resistance virulence plasmids sharing a unique IS26-related molecular signature isolated from different Escherichia coli pathotypes from different hosts

scientific article

Short-chain diamines are the physiological substrates of PACE family efflux pumps

scientific article published on 15 August 2019

Single-step selection of drug resistant Acinetobacter baylyi ADP1 mutants reveals a functional redundancy in the recruitment of multidrug efflux systems

scientific article

Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens

scientific article

Spatially extensive microbial biogeography of the Indian Ocean provides insights into the unique community structure of a pristine coral atoll

scientific article

Statistical analysis of microarray data with replicated spots: a case study with synechococcus WH8102

scientific article

Status of genome projects for nonpathogenic bacteria and archaea.

scientific article

Stormwater influences phytoplankton assemblages within the diverse, but impacted Sydney Harbour estuary

scientific article published in PLoS ONE

Stress effects caused by the expression of a mutant cellobiohydrolase I and proteasome inhibition in Trichoderma reesei Rut-C30.

scientific article

Structural and functional analysis of the type III secretion system from Pseudomonas fluorescens Q8r1-96.

scientific article

Structure of a short-chain dehydrogenase/reductase (SDR) within a genomic island from a clinical strain of Acinetobacter baumannii

scientific article

Substrate specificity and energetics of antiseptic and disinfectant resistance in Staphylococcus aureus

scientific article published in August 1992

Subsurface Stappia: Success Through Defence, Specialisation and Putative Pressure-Dependent Carbon Fixation

scientific article published on 11 December 2019

Succession Patterns and Physical Niche Partitioning in Microbial Communities from Subsurface Coal Seams

scientific article published on 11 January 2019

Sugar metabolism by Brucellae

scientific article

Synthetic Evolution of Metabolic Productivity Using Biosensors

scientific article published on 3 March 2016

Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative

article

TIGRFAMs: a protein family resource for the functional identification of proteins

scientific article

The 2008 update of the Aspergillus nidulans genome annotation: a community effort

scientific article

The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts

scientific article

The Chlamydomonas genome reveals the evolution of key animal and plant functions

scientific article

The EcoCyc Database

scientific article

The EcoCyc Database

scientific article published on 01 November 2018

The EcoCyc Database.

scientific article

The EcoCyc and MetaCyc databases

scientific article

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.

scientific article

The Escherichia coli ABC transporters: an update

scientific article published on 01 May 1999

The Genomic Sequence of Pseudomonas fluorescens Pf-5: Insights Into Biological Control

scientific article

The POT family of transport proteins

scientific article

The Role of Zinc Efflux during Acinetobacter baumannii Infection

scientific article published on 08 November 2019

The Role of the CopA Copper Efflux System in Virulence ⬇️

scientific article published on 29 January 2019

The Rsm regulon of plant growth-promoting Pseudomonas fluorescens SS101: role of small RNAs in regulation of lipopeptide biosynthesis

scientific article

The SMR family: a novel family of multidrug efflux proteins involved with the efflux of lipophilic drugs.

scientific article

The common oceanographer: crowdsourcing the collection of oceanographic data

scientific article

The complete genome and phenome of a community-acquired Acinetobacter baumannii

scientific article

The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium

scientific article

The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000

scientific article

The effect of iron limitation on the transcriptome and proteome of Pseudomonas fluorescens Pf-5.

scientific article

The effect of zinc limitation on the transcriptome ofPseudomonas protegens Pf-5

scientific article published on 19 August 2012

The ergosterol biosynthesis pathway, transporter genes, and azole resistance in Aspergillus fumigatus.

scientific article

The genome of M. acetivorans reveals extensive metabolic and physiological diversity

scientific article

The genome of a motile marine Synechococcus

scientific article

The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2

scientific article

The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

scientific article

The genome sequence of Schizosaccharomyces pombe

scientific article

The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough

scientific article

The genome sequence of the filamentous fungus Neurospora crassa

scientific article

The multidrug efflux protein NorM is a prototype of a new family of transporters

scientific article

The putative drug efflux systems of the Bacillus cereus group ⬇️

scientific article

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

scientific article

The value of complete microbial genome sequencing (you get what you pay for).

scientific article

Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils

scientific article

Tiny Microbes with a Big Impact: The Role of Cyanobacteria and Their Metabolites in Shaping Our Future

scientific article

Topology, structure and evolution of two families of proteins involved in antibiotic and antiseptic resistance in eukaryotes and prokaryotes--an analysis

scientific article

Toward Methanol-Based Biomanufacturing: Emerging Strategies for Engineering Synthetic Methylotrophy in <i>Saccharomyces cerevisiae</i>

Toward Methanol-Based Biomanufacturing: Emerging Strategies for Engineering Synthetic Methylotrophy in <i>Saccharomyces cerevisiae</i>

scientific article published on 18 July 2022

ToxoDB: accessing the Toxoplasma gondii genome

scientific article

Trait dimensions in bacteria and archaea compared to vascular plants

scientific article published on 25 April 2021

Transcriptomic and biochemical analyses identify a family of chlorhexidine efflux proteins

scientific article

Transport capabilities encoded within the Bacillus subtilis genome.

scientific article

TransportDB 2.0: a database for exploring membrane transporters in sequenced genomes from all domains of life

scientific article

TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels

scientific article published on 28 November 2006

TransportDB: a relational database of cellular membrane transport systems

scientific article published on January 2004

Trimming the genomic fat: minimising and re-functionalising genomes using synthetic biology

scientific article published on 8 April 2023

Unicellular Cyanobacteria Are Important Components of Phytoplankton Communities in Australia's Northern Oceanic Ecoregions

article

Unified inventory of established and putative transporters encoded within the complete genome of Saccharomyces cerevisiae ⬇️

scientific article published on June 23, 1998

Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria.

scientific article

Who eats what? Unravelling microbial conversion of coal to methane

scientific article published on 19 June 2019

Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species

scientific article

Whole-genome microarray analyses of Synechococcus-Vibrio interactions

scientific article published on 30 July 2009

Yeast's balancing act between ethanol and glycerol production in low-alcohol wines

scientific article published on 13 January 2017

Zinc stress induces copper depletion in Acinetobacter baumannii

scientific article published on 11 March 2017

pA506, a conjugative plasmid of the plant epiphyte Pseudomonas fluorescens A506

scientific article published on 28 June 2013

pEl1573 Carrying blaIMP-4, from Sydney, Australia, is closely related to other IncL/M plasmids

scientific article

pJIE137 carrying blaCTX-M-62 is closely related to p271A carrying blaNDM-1.

scientific article published on 17 January 2012

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