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List of works by Alessio Mengoni

A Different Microbiome Gene Repertoire in the Airways of Cystic Fibrosis Patients with Severe Lung Disease

scientific article

A First Insight into the Gut Microbiota of the Sea Turtle Caretta caretta.

scientific article published on 07 July 2016

A Method for the Structure-Based, Genome-Wide Analysis of Bacterial Intergenic Sequences Identifies Shared Compositional and Functional Features

scientific article published on 22 October 2019

Advances in Host Plant and Rhizobium Genomics to Enhance Symbiotic Nitrogen Fixation in Grain Legumes

article

Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network

scientific article

Antagonistic interactions between endophytic cultivable bacterial communities isolated from the medicinal plant Echinacea purpurea.

scientific article

Antibiotic resistance differentiates Echinacea purpurea endophytic bacterial communities with respect to plant organs

scientific article published on 2 October 2014

Antimicrobial activity of Pseudoalteromonas strains isolated from the Ross Sea (Antarctica) versus Cystic Fibrosis opportunistic pathogens

scholarly article by Isabel Maida et al published 11 February 2015 in Hydrobiologia

Applying predictive models to decipher rhizobacterial modifications in common reed die-back affected populations

scientific article published on 15 June 2018

Arthrobacter sp. EpRS66 and Arthrobacter sp. EpRS71: Draft Genome Sequences from Two Bacteria Isolated from Echinacea purpurea Rhizospheric Soil.

scientific article published on 12 September 2016

Bacterial community and proteome analysis of fresh-cut lettuce as affected by packaging.

scientific article published on 27 October 2015

Bioactive volatile organic compounds from Antarctic (sponges) bacteria

scientific article

Biogeography of Sinorhizobium meliloti nodulating alfalfa in different Croatian regions

scientific article published on 21 June 2014

CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes

scientific article

Cell Cycle Control by the Master Regulator CtrA in Sinorhizobium meliloti.

scientific article published on 15 May 2015

Changes in cystic fibrosis airway microbial community associated with a severe decline in lung function

scientific article

Characterization of nickel-resistant bacteria isolated from serpentine soil.

scientific article published in November 2001

Comparative genomics of VirR regulons in Clostridium perfringens strains

scientific article

Comparison of 16S rRNA and 16S rDNA T-RFLP Approaches to Study Bacterial Communities in Soil Microcosms Treated with Chromate as Perturbing Agent

scientific article published on 01 October 2005

Competitiveness for Nodule Colonization in Sinorhizobium meliloti: Combined <i>In Vitro</i>-Tagged Strain Competition and Genome-Wide Association Analysis

scientific article published on 27 July 2021

Construction of a new vector conferring methotrexate resistance in Nicotiana tabacum plants

scientific article published on 01 August 1998

Contrasting patterns of genetic divergence in two sympatric pseudo-metallophytes: Rumex acetosa L. and Commelina communis L

scientific article

Correction: Pyrosequencing Unveils Cystic Fibrosis Lung Microbiome Differences Associated with a Severe Lung Function Decline.

scientific article published on August 2016

DNA Methylation in <i>Ensifer</i> Species during Free-Living Growth and during Nitrogen-Fixing Symbiosis with <i>Medicago</i> spp

scientific article published on 04 January 2022

Development of a cultivation-independent approach for the study of genetic diversity of Sinorhizobium meliloti populations

article

Development of real-time PCR assay for detection and quantification of Sinorhizobium meliloti in soil and plant tissue.

scientific article published on 16 January 2009

Distribution patterns of polychlorinated dibenzo-p-dioxins and polychlorinated dibenzofurans in sediments of the Xiangjiang River, China

scientific article published on 7 December 2011

Diversity ofSinorhizobiumstrains nodulatingMedicago sativafrom different Iranian regions

scientific article published on 01 November 2008

Draft Genome Sequence of a Highly Virulent Strain of the Plant Pathogen Dickeya solani, IFB0099.

scientific article published on 19 March 2015

Draft genome sequence and overview of the purple non sulfur bacterium Rhodopseudomonas palustris 42OL

scientific article published on 9 March 2016

DuctApe: a suite for the analysis and correlation of genomic and OmniLog™ Phenotype Microarray data

scientific article

Effect of Site and Phenological Status on the Potato Bacterial Rhizomicrobiota

scientific article published in 2022

Effect of on-field inoculation of Phaseolus vulgaris with rhizobia on soil bacterial communities.

scientific article published on 26 April 2011

Endophytes from African Rice (Oryza glaberrima L.) Efficiently Colonize Asian Rice (Oryza sativa L.) Stimulating the Activity of Its Antioxidant Enzymes and Increasing the Content of Nitrogen, Carbon, and Chlorophyll

scientific article published in 2021

Endophytes: Improving Plant Performance

scientific article published in 2022

Endophytic and rhizospheric bacterial communities isolated from the medicinal plants Echinacea purpurea and Echinacea angustifolia

scientific article

Enrichment and identification of bacteria capable of reducing chemical oxygen demand of anaerobically treated molasses spent wash

scientific article

Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome

scientific article published on 4 September 2015

Exploring the Anti-Burkholderia cepacia Complex Activity of Essential Oils: A Preliminary Analysis

scientific article published on 19 February 2014

Exploring the bacterial gut microbiota of supralittoral talitrid amphipods

scientific article

Exploring the dynamics of bacterial community composition in soil: the pan-bacteriome approach

scientific article published on 7 January 2015

Exploring the evolutionary dynamics of plasmids: the Acinetobacter pan-plasmidome

scientific article

Exploring the links between bacterial communities and magnetic susceptibility in bulk soil and rhizosphere of beech (Fagus sylvatica L.)

scientific article published on 02 March 2019

Exploring the plant-associated bacterial communities in Medicago sativa L.

scientific article

Exploring the resident gut microbiota of stranded odontocetes: high similarities between two dolphin species <i>Tursiops truncatus</i> and <i>Stenella coeruleoalba</i>

scientific article published in 2020

Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti ⬇️

scientific article

Fluctuation of bacteria isolated from elm tissues during different seasons and from different plant organs

article

Fluctuation of endophytic bacteria and phytoplasmosis in elm trees.

scientific article published in January 2003

From pangenome to panphenome and back

scientific article published in January 2015

Furnishing spaceship environment: evaluation of bacterial biofilms on different materials used inside International Space Station

scientific article published on 08 May 2018

Genetic Diversity of Bacterial Communities of Serpentine Soil and of Rhizosphere of the Nickel-Hyperaccumulator Plant Alyssum bertolonii

article

Genetic diversity and dynamics of Sinorhizobium meliloti populations nodulating different alfalfa cultivars in Italian soils

scientific article

Genetic diversity and heavy metal tolerance in populations of Silene paradoxa L. (Caryophyllaceae): a random amplified polymorphic DNA analysis

article

Genetic diversity of heavy metal-tolerant populations in Silene paradoxa L. (Caryophyllaceae): a chloroplast microsatellite analysis

article

Genetic relationship of Sinorhizobium meliloti and Sinorhizobium medicae strains isolated from Caucasian region

scientific article published in March 2003

Genome-scale metabolic reconstruction of the symbiosis between a leguminous plant and a nitrogen-fixing bacterium

scientific article published on 22 May 2020

Genomes analysis and bacteria identification: The use of overlapping genes as molecular markers

scientific article

Genomic and Biotechnological Characterization of the Heavy-Metal Resistant, Arsenic-Oxidizing Bacterium Ensifer sp. M14

article

Harnessing Rhizobia to Improve Heavy-Metal Phytoremediation by Legumes

scientific article published on 8 November 2018

How does particulate matter affect plant transcriptome and microbiome?

scientific article published in May 2023

Improvement of the cDNA-AFLP method using fluorescent primers for transcription analysis in bacteria.

scientific article

Independent origins and evolution of the secondary replicons of the class Gammaproteobacteria

scientific article published in 2023

Is the plant-associated microbiota of Thymus spp. adapted to plant essential oil?

scientific article

Isolation and Characterization of Endophytic Bacteria from the Nickel Hyperaccumulator Plant Alyssum bertolonii

article

Large-scale genetic variation of the symbiosis-required megaplasmid pSymA revealed by comparative genomic analysis of Sinorhizobium meliloti natural strains

scientific article

Linking Bacterial Endophytic Communities to Essential Oils: Clues from Lavandula angustifolia Mill. ⬇️

scientific article

Mapping contigs using CONTIGuator

scientific article

Metabolic Modeling of Pectobacterium parmentieri SCC3193 Provides Insights into Metabolic Pathways of Plant Pathogenic Bacteria

scientific article published on 05 April 2019

Metabolic capacity of Sinorhizobium (Ensifer) meliloti strains as determined by phenotype MicroArray analysis.

scientific article published on 26 June 2009

Metabolic modelling reveals the specialization of secondary replicons for niche adaptation in Sinorhizobium meliloti.

scientific article published on 22 July 2016

Metal-Resistance in Bacteria: Why Care?

scientific article published on 08 December 2020

Mixed Nodule Infection in Sinorhizobium meliloti-Medicago sativa Symbiosis Suggest the Presence of Cheating Behavior

scientific article published on 13 June 2016

Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58

scientific article

Phenotypic and genomic characterization of the antimicrobial producer Rheinheimera sp. EpRS3 isolated from the medicinal plant Echinacea purpurea: insights into its biotechnological relevance.

scientific article published on 21 November 2016

Plant-bacteria association and symbiosis: are there common genomic traits in alphaproteobacteria?

scientific article published on 29 November 2011

Plant-by-plant variations of bacterial communities associated with leaves of the nickel hyperaccumulator Alyssum bertolonii Desv

scientific article

Plant-endophytes interaction influences the secondary metabolism in Echinacea purpurea (L.) Moench: an in vitro model.

scientific article published on 5 December 2017

Plasmid electroporation of Sinorhizobium strains: The role of the restriction gene hsdR in type strain Rm1021

article

Preface. Bacterial pangenomics

scientific article published in January 2015

Preliminary data on antibacterial activity of Echinacea purpurea-associated bacterial communities against Burkholderia cepacia complex strains, opportunistic pathogens of Cystic Fibrosis patients.

scientific article

Pseudomonas aeruginosa Sepsis in Stem Cell Transplantation Patients

scientific article published on 19 June 2006

Putative midkine family protein up-regulation in Patella caerulea (Mollusca, Gastropoda) exposed to sublethal concentrations of cadmium.

scientific article

Pyrosequencing Unveils Cystic Fibrosis Lung Microbiome Differences Associated with a Severe Lung Function Decline

scientific article

Relationship between heavy metals pollution and genetic diversity in Mediterranean populations of the sandhopper Talitrus saltator (Montagu) (Crustacea, Amphipoda)

scientific article published on 19 January 2010

Replicon-dependent bacterial genome evolution: the case of Sinorhizobium meliloti

scientific article published in January 2013

Rhizosphere effect and salinity competing to shape microbial communities in Phragmites australis (Cav.) Trin. ex-Steud

scientific article

Soil bacterial community response to differences in agricultural management along with seasonal changes in a Mediterranean region

scientific article

StreamingTrim 1.0: a Java software for dynamic trimming of 16S rRNA sequence data from metagenetic studies

scientific article

Synthetic plant microbiota challenges in nonmodel species

scientific article published in 2022

Taxonomy of Rhizobiaceae revisited: proposal of a new framework for genus delimitation

scientific article published on 3 March 2022

The DivJ, CbrA and PleC system controls DivK phosphorylation and symbiosis in Sinorhizobium meliloti

scientific article published on 19 August 2013

The capability to synthesize phytochelatins and the presence of constitutive and functional phytochelatin synthases are ancestral (plesiomorphic) characters for basal land plants

scientific article published on 21 January 2014

The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis

scientific article

The influence of Echinacea purpurea leaf microbiota on chicoric acid level

scientific article published on 26 July 2019

The integrated microbial genome resource of analysis

scientific article

Tn-Core: A Toolbox for Integrating Tn-seq Gene Essentiality Data and Constraint-Based Metabolic Modeling

scientific article published on 27 December 2018

Untargeted Metagenomic Investigation of the Airway Microbiome of Cystic Fibrosis Patients with Moderate-Severe Lung Disease

scientific article published on 04 July 2020

VDR TaqI polymorphism is associated with chronic periodontitis in Italian population

scientific article published on 20 July 2011

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