List of works by Matteo Brilli

A highly specific microRNA-mediated mechanism silences LTR retrotransposons of strawberry.

scientific article

A multi-omics study of the grapevine-downy mildew (Plasmopara viticola) pathosystem unveils a complex protein coding- and noncoding-based arms race during infection

scientific article published on 15 January 2018

Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network

scientific article

Analysis of the CtrA pathway in Magnetospirillum reveals an ancestral role in motility in alphaproteobacteria

scientific article

Antagonistic interactions between psychrotrophic cultivable bacteria isolated from Antarctic sponges: a preliminary analysis

scientific article published on 25 October 2008

Bacterium-bacterium inhibitory interactions among psychrotrophic bacteria isolated from Antarctic seawater (Terra Nova Bay, Ross Sea).

scientific article published on 26 March 2007

Biodiversity of cultivable psychrotrophic marine bacteria isolated from Terra Nova Bay (Ross Sea, Antarctica).

scientific article

Black Soldier Fly Larvae Adapt to Different Food Substrates through Morphological and Functional Responses of the Midgut

scientific article published on 13 July 2020

COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses

scientific article published on 19 November 2015

Cell Cycle Control by the Master Regulator CtrA in Sinorhizobium meliloti.

scientific article published on 15 May 2015

Comparative genomics of VirR regulons in Clostridium perfringens strains

scientific article

Current trends in the bioinformatic sequence analysis of metabolic pathways in prokaryotes

scientific article

DNA binding of the cell cycle transcriptional regulator GcrA depends on N6-adenosine methylation in Caulobacter crescentus and other Alphaproteobacteria

scientific article

Dissecting the Effect of a 3D Microscaffold on the Transcriptome of Neural Stem Cells with Computational Approaches: A Focus on Mechanotransduction

scientific article published on 15 September 2020

Draft Genome Sequence of Chromate-Resistant and Biofilm-Producing Strain Pseudomonas alcaliphila 34.

scientific article

Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome

scientific article published on 4 September 2015

Exploring the evolutionary dynamics of plasmids: the Acinetobacter pan-plasmidome

scientific article

Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti ⬇️

scientific article

Fatal respiratory infection due to ST308 VIM-1-producing Pseudomonas aeruginosa in a lung transplant recipient: case report and review of the literature

scientific article published on 26 August 2020

Fine-tuning of the flavonoid and monolignol pathways during apple early fruit development.

scientific article published on 11 February 2017

First Report of an ST410 OXA-181 and CTX-M-15 Coproducing Escherichia coli Clone in Italy: A Whole-Genome Sequence Characterization.

scientific article published on 23 February 2018

Flooding Responses on Grapevine: A Physiological, Transcriptional, and Metabolic Perspective

article

Gene expression and metabolite accumulation during strawberry (Fragaria × ananassa) fruit development and ripening

scientific article published on 31 July 2018

Identification of blaVIM-1 Gene in ST307 and ST661 Klebsiella pneumoniae Clones in Italy: Old Acquaintances for New Combinations

scientific article published on 27 December 2018

Identification of metabolic network models from incomplete high-throughput datasets ⬇️

scientific article published on July 2011

Identification of variable sites in Sars-CoV-2 and their abundance profiles in time

scientific article published on 01 May 2020

Inference from proteobacterial operons shows piecewise organization: a reply to Price et al

scientific article published on 04 September 2006

Molecular evolution of hisB genes

scientific article (publication date: February 2004)

Morphological and molecular insights into the diversity of Leptoconops biting midges from a heavily infested Mediterranean area

scientific article published in 2023

MotifScorer: using a compendium of microarrays to identify regulatory motifs

scientific article

Non-coding RNAs Potentially Controlling Cell Cycle in the Model Caulobacter crescentus: A Bioinformatic Approach.

scientific article published on 30 May 2018

Novel Aspects on The Interaction Between Grapevine and Plasmopara viticola: Dual-RNA-Seq Analysis Highlights Gene Expression Dynamics in The Pathogen and The Plant During The Battle For Infection

scientific article published on 28 February 2020

On the identifiability of metabolic network models

scientific article published on 15 November 2012

On the origin and evolution of biosynthetic pathways: integrating microarray data with structure and organization of the Common Pathway genes

scientific article

Peptidoglycan in obligate intracellular bacteria

scientific article

Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58

scientific article

Relations between Effects and Structure of Small Bicyclic Molecules on the Complex Model System Saccharomyces cerevisiae

scientific article

SeqDeχ: A Sequence Deconvolution Tool for Genome Separation of Endosymbionts From Mixed Sequencing Samples

scientific article published on 19 September 2019

Short and long-term genome stability analysis of prokaryotic genomes

scientific article

Structural and dynamical analysis of biological networks

scientific article published on 20 August 2012

Structural, evolutionary and genetic analysis of the histidine biosynthetic "core" in the genus Burkholderia

scientific article published on 13 August 2009

Targeted genotyping by sequencing: a new way to genome profile the cat

scientific article published on 12 September 2019

The CAI Analyser Package: inferring gene expressivity from raw genomic data

scientific article

The DivJ, CbrA and PleC system controls DivK phosphorylation and symbiosis in Sinorhizobium meliloti

scientific article published on 19 August 2013

The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis

scientific article

The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry).

scientific article published in April 2018

The noncoding RNA CcnA modulates the master cell cycle regulators CtrA and GcrA in Caulobacter crescentus

scientific article published on 22 February 2022

The nucleoid as a scaffold for the assembly of bacterial signaling complexes.

scientific article published on 21 November 2017

The origin and evolution of eucaryal HIS7 genes: from metabolon to bifunctional proteins?

scientific article published in September 2004

The origin and evolution of operons: the piecewise building of the proteobacterial histidine operon

scientific article published in March 2005

The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis

scientific article

The role of gene fusions in the evolution of metabolic pathways: the histidine biosynthesis case

scientific article

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