List of works - Robert Lanfear

A comprehensive toolkit to enable MinION long-read sequencing in any laboratory

A generation time effect on the rate of molecular evolution in invertebrates

scientific article published on 18 January 2010

Ancestral Notch-mediated segmentation revealed in the cockroach Periplaneta americana

scholarly article

Are the Deuterostome Posterior Hox Genes a Fast-Evolving Class? ⬇️

scientific article published on January 1, 2010

Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case

AusTraits, a curated plant trait database for the Australian flora ⬇️

publication published on 30 September 2021

Automatic selection of partitioning schemes for phylogenetic analyses using iterative k-means clustering of site rates

scientific article

Bayesian estimation of substitution rates from ancient DNA sequences with low information content

scientific article published on 4 February 2011

Body mass-corrected molecular rate for bird mitochondrial DNA.

scientific article

Broad activation of latent HIV-1 in vivo

scientific article published on 08 September 2016

Correction: Differences in gene expression within a striking phenotypic mosaic Eucalyptus tree that varies in susceptibility to herbivory.

scientific article published on 2 April 2013

Diversification and the rate of molecular evolution: no evidence of a link in mammals

scientific article (publication date: 4 October 2011)

Do plants have a segregated germline?

scientific article

Domestication and the mitochondrial genome: comparing patterns and rates of molecular evolution in domesticated mammals and birds and their wild relatives

scientific article published on January 2014

Estimating Improved Partitioning Schemes for Ultraconserved Elements

scientific article published on 11 April 2018

Estimating phylogenies for species assemblages: a complete phylogeny for the past and present native birds of New Zealand

scientific article

Estimating the Effective Sample Size of Tree Topologies from Bayesian Phylogenetic Analyses

scientific article published on 19 July 2016

Evidence of Experimental Bias in the Life Sciences: Why We Need Blind Data Recording

scientific article

Evolutionary History of the Hymenoptera

scientific article

Exploring the Relationships between Mutation Rates, Life History, Genome Size, Environment, and Species Richness in Flowering Plants

scientific article published on 10 February 2015

Gender differences in conference presentations: a consequence of self-selection?

scientific article

Generation time, life history and the substitution rate of neutral mutations.

scientific article

Genomic approaches to selection in outcrossing perennials: focus on essential oil crops

scientific article published on 04 August 2015

Harnessing the MinION: An example of how to establish long-read sequencing in a laboratory using challenging plant tissue from Eucalyptus pauciflora

article

INSECT PHYLOGENOMICS. Response to Comment on "Phylogenomics resolves the timing and pattern of insect evolution".

scientific article published on July 2015

Improved characterisation of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks

scientific article published in June 2010

Inferring population connectivity across the range of the purple-crowned fairy-wren (Malurus coronatus) from mitochondrial DNA and morphology: implications for conservation management

scientific article published in 2012

Linking Branch Lengths Across Loci Provides the Best Fit for Phylogenetic Inference

Metabolic rate does not calibrate the molecular clock

scholarly article

MinIONQC: fast and simple quality control for MinION sequencing data

article by Robert Lanfear et al published 1 February 2019 in Computer applications in the biosciences : CABIOS

Mito-communications

scientific article published in June 2011

Mito-communications

scientific article published on 16 May 2012

Mito-communications

Mito-communications.

scientific article

Molecular Evolutionary Consequences of Island Colonization

scientific article

Mutation rate is linked to diversification in birds

scientific article

New methods to calculate concordance factors for phylogenomic datasets

article published in 2018

Open access is worth considering: a reply to Agrawal

scientific article published on 30 April 2014

Parasitic plants have increased rates of molecular evolution across all three genomes

scientific article

PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses

scientific article published on 23 December 2016

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

scientific article (publication date: 20 January 2012)

Phylogenetic uncertainty can bias the number of evolutionary transitions estimated from ancestral state reconstruction methods

scientific article published on 14 July 2015

Phylogenomics resolves the timing and pattern of insect evolution

scientific article (publication date: 6 November 2014)

Plant Mating Systems Often Vary Widely Among Populations

article

Population size and the rate of evolution.

scientific article published on 20 October 2013

Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression

scientific article published on 03 December 2020

Public Data Archiving in Ecology and Evolution: How Well Are We Doing?

scientific article (publication date: 2015)

RWTY (R We There Yet): An R Package for Examining Convergence of Bayesian Phylogenetic Analyses

scientific article published on 12 January 2017

Rapid evolution of a novel signalling mechanism by concerted duplication and divergence of a BMP ligand and its extracellular modulators

scientific article

Reconstructing past species assemblages reveals the changing patterns and drivers of extinction through time

scientific article (publication date: 7 October 2012)

Reply to Englund: Molecular evolution and diversification--Counting species is better than counting nodes when the phylogeny is unknown

article published in the Proceedings of the National Academy of Sciences of the United States of America

Selecting optimal partitioning schemes for phylogenomic datasets

scientific article

Statistical Tests between Competing Hypotheses of Hox Cluster Evolution

article

Taller plants have lower rates of molecular evolution

scientific article published on January 2013

Testing for phylogenetic signal in single-cell RNA-seq data

The Evolution of Clutch Size in Hosts of Avian Brood Parasites.

scientific article published in September 2017

The Prevalence and Impact of Model Violations in Phylogenetics

scholarly article published 2 November 2018

The biogeographical boundaries of northern Australia: evidence from ecological niche models and a multi-locus phylogeny ofUperoleiatoadlets (Anura: Myobatrachidae)

article

The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies

scientific article published on 01 January 2020

The effects of partitioning on phylogenetic inference

scientific article published on 6 February 2015

The evolution of queen pheromones in the ant genus Lasius

scientific article published on 11 May 2013

The impact of calibration and clock-model choice on molecular estimates of divergence times

scientific article published on 6 June 2014

The influence of non-random species sampling on macroevolutionary and macroecological inference from phylogenies

scholarly article by Xia Hua & Robert Lanfear published 27 February 2018 in Methods in Ecology and Evolution

The local-clock permutation test: a simple test to compare rates of molecular evolution on phylogenetic trees ⬇️

scientific article published on November 5, 2010

The mitochondrial genome structure of Xenoturbella bocki (phylum Xenoturbellida) is ancestral within the deuterostomes

scientific article

The unusual occurrence of green algal balls of Chaetomorpha linum on a beach in Sydney, Australia

article

The yield of essential oils in Melaleuca alternifolia (Myrtaceae) is regulated through transcript abundance of genes in the MEP pathway

scientific article published on 27 March 2013

Time-dependent rates of molecular evolution

scientific article published on 08 July 2011

Timing the extant avian radiation: The rise of modern birds, and the importance of modeling molecular rate variation

Troubleshooting public data archiving: suggestions to increase participation

scientific article published in January 2014

Updated site concordance factors minimize effects of homoplasy and taxon sampling

scientific article published in 2022

Watching the clock: studying variation in rates of molecular evolution between species

scientific article published on 23 July 2010

List of works by Robert Lanfear

A comprehensive toolkit to enable MinION long-read sequencing in any laboratory

A generation time effect on the rate of molecular evolution in invertebrates

Ancestral Notch-mediated segmentation revealed in the cockroach Periplaneta americana

Are the Deuterostome Posterior Hox Genes a Fast-Evolving Class? ⬇️

Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case

AusTraits, a curated plant trait database for the Australian flora ⬇️

Automatic selection of partitioning schemes for phylogenetic analyses using iterative k-means clustering of site rates

Bayesian estimation of substitution rates from ancient DNA sequences with low information content

Body mass-corrected molecular rate for bird mitochondrial DNA.

Broad activation of latent HIV-1 in vivo

Correction: Differences in gene expression within a striking phenotypic mosaic Eucalyptus tree that varies in susceptibility to herbivory.

Diversification and the rate of molecular evolution: no evidence of a link in mammals

Do plants have a segregated germline?

Domestication and the mitochondrial genome: comparing patterns and rates of molecular evolution in domesticated mammals and birds and their wild relatives

Estimating Improved Partitioning Schemes for Ultraconserved Elements

Estimating phylogenies for species assemblages: a complete phylogeny for the past and present native birds of New Zealand

Estimating the Effective Sample Size of Tree Topologies from Bayesian Phylogenetic Analyses

Evidence of Experimental Bias in the Life Sciences: Why We Need Blind Data Recording

Evolutionary History of the Hymenoptera

Exploring the Relationships between Mutation Rates, Life History, Genome Size, Environment, and Species Richness in Flowering Plants

Gender differences in conference presentations: a consequence of self-selection?

Generation time, life history and the substitution rate of neutral mutations.

Genomic approaches to selection in outcrossing perennials: focus on essential oil crops

Harnessing the MinION: An example of how to establish long-read sequencing in a laboratory using challenging plant tissue from Eucalyptus pauciflora

INSECT PHYLOGENOMICS. Response to Comment on "Phylogenomics resolves the timing and pattern of insect evolution".

Improved characterisation of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks

Inferring population connectivity across the range of the purple-crowned fairy-wren (Malurus coronatus) from mitochondrial DNA and morphology: implications for conservation management

Linking Branch Lengths Across Loci Provides the Best Fit for Phylogenetic Inference

Metabolic rate does not calibrate the molecular clock

MinIONQC: fast and simple quality control for MinION sequencing data

Mito-communications

Mito-communications

Mito-communications

Mito-communications

Mito-communications

Mito-communications.

Molecular Evolutionary Consequences of Island Colonization

Mutation rate is linked to diversification in birds

New methods to calculate concordance factors for phylogenomic datasets

Open access is worth considering: a reply to Agrawal

Parasitic plants have increased rates of molecular evolution across all three genomes

PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

Phylogenetic uncertainty can bias the number of evolutionary transitions estimated from ancestral state reconstruction methods

Phylogenomics resolves the timing and pattern of insect evolution

Plant Mating Systems Often Vary Widely Among Populations

Population size and the rate of evolution.

Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression

Public Data Archiving in Ecology and Evolution: How Well Are We Doing?

RWTY (R We There Yet): An R Package for Examining Convergence of Bayesian Phylogenetic Analyses

Rapid evolution of a novel signalling mechanism by concerted duplication and divergence of a BMP ligand and its extracellular modulators

Reconstructing past species assemblages reveals the changing patterns and drivers of extinction through time

Reply to Englund: Molecular evolution and diversification--Counting species is better than counting nodes when the phylogeny is unknown

Selecting optimal partitioning schemes for phylogenomic datasets

Statistical Tests between Competing Hypotheses of Hox Cluster Evolution

Taller plants have lower rates of molecular evolution

Testing for phylogenetic signal in single-cell RNA-seq data

The Evolution of Clutch Size in Hosts of Avian Brood Parasites.

The Prevalence and Impact of Model Violations in Phylogenetics

The biogeographical boundaries of northern Australia: evidence from ecological niche models and a multi-locus phylogeny ofUperoleiatoadlets (Anura: Myobatrachidae)

The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies

The effects of partitioning on phylogenetic inference

The evolution of queen pheromones in the ant genus Lasius

The impact of calibration and clock-model choice on molecular estimates of divergence times

The influence of non-random species sampling on macroevolutionary and macroecological inference from phylogenies

The local-clock permutation test: a simple test to compare rates of molecular evolution on phylogenetic trees ⬇️

The mitochondrial genome structure of Xenoturbella bocki (phylum Xenoturbellida) is ancestral within the deuterostomes

The unusual occurrence of green algal balls of Chaetomorpha linum on a beach in Sydney, Australia

The yield of essential oils in Melaleuca alternifolia (Myrtaceae) is regulated through transcript abundance of genes in the MEP pathway

Time-dependent rates of molecular evolution

Timing the extant avian radiation: The rise of modern birds, and the importance of modeling molecular rate variation

Troubleshooting public data archiving: suggestions to increase participation

Updated site concordance factors minimize effects of homoplasy and taxon sampling

Watching the clock: studying variation in rates of molecular evolution between species