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List of works by Andreas Hildebrandt

A Greedy Algorithm for Hierarchical Complete Linkage Clustering

article by Ernst Althaus et al published 2014 in Lecture Notes in Computer Science

A Novel Three-Dimensional Collaborative Online Platform for Bio-molecular Modeling

A computational method for studying the relation between alternative splicing and DNA methylation

scientific article published on 13 September 2015

A consensus line search algorithm for molecular potential energy functions

scientific article published in July 2009

A dynamic program analysis to find floating-point accuracy problems

A dynamic program analysis to find floating-point accuracy problems

A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors

scientific article

A new numerical method for nonlocal electrostatics in biomolecular simulations

A novel automated segmentation method for retinal layers in OCT images proves retinal degeneration after optic neuritis.

scientific article published on 25 August 2015

Automated bond order assignment as an optimization problem

scientific article

BALL--biochemical algorithms library 1.3

scientific article

BALLView: a tool for research and education in molecular modeling

scientific article

BALLView: an object-oriented molecular visualization and modeling framework

scientific article

CUDA-enabled hierarchical ward clustering of protein structures based on the nearest neighbour chain algorithm

CellLineNavigator: a workbench for cancer cell line analysis

scientific article

Characterization of metal-labelled peptides by matrix-assisted laser desorption/ionization mass spectrometry and tandem mass spectrometry

scientific article

Competing salt effects on phase behavior of protein solutions: tailoring of protein interaction by the binding of multivalent ions and charge screening.

scientific article

Complex humoral immune response against a benign tumor: frequent antibody response against specific antigens as diagnostic targets

scientific article

Computational quantification of peptides from LC-MS data

scientific article

Coronavirus Inhibitors Targeting nsp16

scientific article published on 18 January 2023

Correction to On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking

scholarly article published in Journal of Chemical Information and Modeling

CoverageAnalyzer (CAn): A Tool for Inspection of Modification Signatures in RNA Sequencing Profiles

scientific article published on 10 November 2016

DrugTargetInspector: An assistance tool for patient treatment stratification

scientific article

Efficient Analysis of Mass Spectrometry Data Using the Isotope Wavelet

article

Efficient computation of root mean square deviations under rigid transformations

scientific article published on 19 December 2013

Electrostatic potentials of proteins in water: a structured continuum approach

scientific article published in January 2007

Glycosylation patterns of human chorionic gonadotropin revealed by liquid chromatography-mass spectrometry and bioinformatics

scientific article published in July 2006

Highly accelerated feature detection in proteomics data sets using modern graphics processing units

scientific article

Human SAP18 mediates assembly of a splicing regulatory multiprotein complex via its ubiquitin-like fold

scientific article

Instruction of haematopoietic lineage choices, evolution of transcriptional landscapes and cancer stem cell hierarchies derived from an AML1-ETO mouse model

scientific article published on 4 October 2013

Integrated quantitative proteomic and transcriptomic analysis of lung tumor and control tissue: a lung cancer showcase

scientific article

Isotope pattern deconvolution for peptide mass spectrometry by non-negative least squares/least absolute deviation template matching

scientific article

Large oligomeric complex structures can be computationally assembled by efficiently combining docked interfaces

scientific article published on 6 August 2015

Measuring properties of molecular surfaces using ray casting

Modeling Protein-Protein and Protein-DNA Docking

NightShift: NMR shift inference by general hybrid model training--a framework for NMR chemical shift prediction

scientific article

Novel Formulation of Nonlocal Electrostatics

scientific article published in Physical Review Letters

On the applicability of elastic network normal modes in small-molecule docking

scientific article

OpenMS - an open-source software framework for mass spectrometry

scientific article

Parallelized Clustering of Protein Structures on CUDA-Enabled GPUs

PresentaBALL — A powerful package for presentations and lessons in structural biology

ProteinScanAR - An Augmented Reality Web Application for High School Education in Biomolecular Life Sciences

Real-Time Ray Tracing of Complex Molecular Scenes

Reentrant Condensation of Proteins in Solution Induced by Multivalent Counterions

scientific article published in Physical Review Letters

Revisiting automated G-protein coupled receptor modeling: the benefit of additional template structures for a neurokinin-1 receptor model

scientific article published on May 2009

SKINK: a web server for string kernel based kink prediction in α-helices

scientific article

String kernels and high-quality data set for improved prediction of kinked helices in α-helical membrane proteins

scientific article

Structure prediction of protein complexes by an NMR-based protein docking algorithm

scientific article published in May 2001

The impact of isolated lesions on white-matter fiber tracts in multiple sclerosis patients

scientific article published on 10 April 2015

The reverse transcription signature of N-1-methyladenosine in RNA-Seq is sequence dependent

scientific article published on 13 September 2015

Universality of protein reentrant condensation in solution induced by multivalent metal ions

article

ballaxy: web services for structural bioinformatics

scientific article (publication date: 2015)

rapidGSEA: Speeding up gene set enrichment analysis on multi-core CPUs and CUDA-enabled GPUs.

scientific article

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