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List of works by Nico Pfeifer

A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control

scientific article published on 29 October 2013

A genotypic method for determining HIV-2 coreceptor usage enables epidemiological studies and clinical decision support

scientific article published on 20 December 2016

Antibody 10-1074 suppresses viremia in HIV-1-infected individuals

scientific article

Association between HIV-1 coreceptor usage and resistance to broadly neutralizing antibodies

scientific article published on October 2014

CRF19_cpx is an Evolutionary fit HIV-1 Variant Strongly Associated With Rapid Progression to AIDS in Cuba

scientific article published on 28 January 2015

Correlates of protective cellular immunity revealed by analysis of population-level immune escape pathways in HIV-1.

scientific article

Determination of Phenotypic Resistance Cutoffs From Routine Clinical Data

scientific article

Distinct HIV-1 Escape Patterns Selected by Cytotoxic T Cells with Identical Epitope Specificity

scientific article

Effects of sequence alterations on results from genotypic tropism testing

scientific article

Family-Joining: A Fast Distance-Based Method for Constructing Generally Labeled Trees ⬇️

scientific article

Gradient-based optimization of kernel-target alignment for sequence kernels applied to bacterial gene start detection

scientific article published in April 2007

HIV-1 antibody 3BNC117 suppresses viral rebound in humans during treatment interruption

scientific article

HIV-1 therapy with monoclonal antibody 3BNC117 elicits host immune responses against HIV-1.

scientific article

Identification and analysis of methylation call differences between bisulfite microarray and bisulfite sequencing data with statistical learning techniques

Impact of pre-adapted HIV transmission.

scientific article published on 16 May 2016

Improving HIV coreceptor usage prediction in the clinic using hints from next-generation sequencing data ⬇️

scientific article published on September 15, 2012

Improving peptide identification in proteome analysis by a two-dimensional retention time filtering approach

scientific article published in August 2009

Integrating different data types by regularized unsupervised multiple kernel learning with application to cancer subtype discovery

scientific article

Interpretable per case weighted ensemble method for cancer associations

scientific article

LC-MSsim--a simulation software for liquid chromatography mass spectrometry data

scientific article

Modelling binding between CCR5 and CXCR4 receptors and their ligands suggests the surface electrostatic potential of the co-receptor to be a key player in the HIV-1 tropism.

scientific article published on 11 November 2013

OpenMS - an open-source software framework for mass spectrometry

scientific article

Optimal de novo design of MRM experiments for rapid assay development in targeted proteomics

scientific article

Personalized HIV therapy to control drug resistance

scientific article

Prediction of HIV-1 sensitivity to broadly neutralizing antibodies shows a trend towards resistance over time.

scientific article published on 24 October 2017

Primarily oseltamivir-resistant influenza A (H1N1pdm09) virus evolving into a multidrug-resistant virus carrying H275Y and I223R neuraminidase substitutions

scientific article published on 18 June 2014

Statistical learning of peptide retention behavior in chromatographic separations: a new kernel-based approach for computational proteomics

scientific article

TICO: a tool for improving predictions of prokaryotic translation initiation sites

scientific article published on 30 June 2005

TOPP--the OpenMS proteomics pipeline

scientific article

Widespread impact of HLA restriction on immune control and escape pathways of HIV-1

scientific article published on 29 February 2012

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