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List of works by Aaron M. Newman

A functional subset of CD8 T cells during chronic exhaustion is defined by SIRPα expression

scientific article published in Nature Communications

A proteomic approach for the identification of novel lysine methyltransferase substrates

scientific article published on 24 October 2011

An ultrasensitive method for quantitating circulating tumor DNA with broad patient coverage.

scientific article

Antigen presentation profiling reveals recognition of lymphoma immunoglobulin neoantigens.

scientific article published on 22 March 2017

AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number

scientific article

CDK19 is a Regulator of Triple-Negative Breast Cancer Growth

scholarly article

Circulating Tumor DNA Measurements As Early Outcome Predictors in Diffuse Large B-Cell Lymphoma

scientific article published on 20 August 2018

Circulating tumour DNA profiling reveals heterogeneity of EGFR inhibitor resistance mechanisms in lung cancer patients.

scientific article published on 10 June 2016

Combination approach for detecting different types of alterations in circulating tumor DNA in leiomyosarcoma

scientific article published on 20 February 2018

Computational approaches for characterizing the tumor immune microenvironment

scientific article published on 01 October 2019

Data normalization considerations for digital tumor dissection.

scientific article

Determining cell type abundance and expression from bulk tissues with digital cytometry

scientific article published on 06 May 2019

Distinct biological subtypes and patterns of genome evolution in lymphoma revealed by circulating tumor DNA.

scientific article

Dynamic Risk Profiling Using Serial Tumor Biomarkers for Personalized Outcome Prediction

scientific article published on 04 July 2019

Early B cell changes predict autoimmunity following combination immune checkpoint blockade

scientific article published on 8 January 2018

Early Detection of Molecular Residual Disease in Localized Lung Cancer by Circulating Tumor DNA Profiling.

scientific article published on 12 September 2017

Efficient selection of biomineralizing DNA aptamers using deep sequencing and population clustering

scientific article

Exploring Stem Cell Gene Expression Signatures using AutoSOME Cluster Analysis

article

FACTERA: a practical method for the discovery of genomic rearrangements at breakpoint resolution

scientific article

Functional significance of U2AF1 S34F mutations in lung adenocarcinomas

scientific article published on 13 December 2019

Genomic feature selection by coverage design optimization

Global analysis of proline-rich tandem repeat proteins reveals broad phylogenetic diversity in plant secretomes

scientific article

High-throughput genomic profiling of tumor-infiltrating leukocytes.

scientific article

Identification of a colonial chordate histocompatibility gene

scientific article

Identification of tumorigenic cells and therapeutic targets in pancreatic neuroendocrine tumors

scientific article published on 31 March 2016

Identifying stem cell gene expression patterns and phenotypic networks with AutoSOME.

scientific article published in January 2014

In vivo clonal analysis reveals lineage-restricted progenitor characteristics in mammalian kidney development, maintenance, and regeneration.

scientific article published on 15 May 2014

Integrated digital error suppression for improved detection of circulating tumor DNA

scientific article

Lab-specific gene expression signatures in pluripotent stem cells

scientific article published in August 2010

Large-Scale and Comprehensive Immune Profiling and Functional Analysis of Normal Human Aging

scientific article published on 21 July 2015

Potential clinical utility of ultrasensitive circulating tumor DNA detection with CAPP-Seq.

scientific article

Profiling Cell Type Abundance and Expression in Bulk Tissues with CIBERSORTx

scientific article published on 01 January 2020

Profiling Tumor Infiltrating Immune Cells with CIBERSORT.

scientific article published in January 2018

Reply to J. Wang et al

scientific article published on 12 February 2019

Robust enumeration of cell subsets from tissue expression profiles

scientific article published on 30 March 2015

Role of KEAP1/NRF2 and TP53 Mutations in Lung Squamous Cell Carcinoma Development and Radiation Resistance.

scientific article

Single-cell transcriptional diversity is a hallmark of developmental potential

scientific article

Single-cell transcriptional diversity is a hallmark of developmental potential

scholarly article

Skin fibrosis. Identification and isolation of a dermal lineage with intrinsic fibrogenic potential

scientific article

Systems-level analysis of age-related macular degeneration reveals global biomarkers and phenotype-specific functional networks

scientific article

Targeted chromatin ligation, a robust epigenetic profiling technique for small cell numbers.

scientific article published on September 2017

The Immune Landscape of Cancer

scientific article published on 01 August 2019

The genome sequence of the colonial chordate, Botryllus schlosseri

scientific article published in 2013

The prognostic landscape of genes and infiltrating immune cells across human cancers

scientific article published on 20 July 2015

XSTREAM: a practical algorithm for identification and architecture modeling of tandem repeats in protein sequences

scientific article

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

scientific article

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