List of works by Laura I. Furlong

A crowdsourcing workflow for extracting chemical-induced disease relations from free text

scientific article (publication date: 2016)

A knowledge-driven approach to extract disease-related biomarkers from the literature

scientific article

A system-level analysis of patient disease trajectories based on clinical, phenotypic and molecular similarities

scientific article published on 13 November 2020

Acrosin antibodies and infertility. I. Detection of antibodies towards proacrosin/acrosin in women consulting for infertility and evaluation of their effects upon the sperm protease activities

article

Anti-human proacrosin antibody inhibits the zona pellucida (ZP)-induced acrosome reaction of ZP-bound spermatozoa.

scientific article published on 21 October 2009

Antiacrosin antibodies and infertility. II. Gene immunization with human proacrosin to assess the effect of immunity toward proacrosin/acrosin upon protein activities and animal fertility.

scientific article published on 25 April 2008

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus

scientific article published on 6 October 2011

Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

scientific article published on 17 July 2020

Automatic filtering and substantiation of drug safety signals

scientific article

Binding of recombinant human proacrosin/acrosin to zona pellucida (ZP) glycoproteins. I. Studies with recombinant human ZPA, ZPB, and ZPC

scientific article

Binding of recombinant human proacrosin/acrosin to zona pellucida glycoproteins. II. Participation of mannose residues in the interaction

scientific article

CDH1/E-cadherin and solid tumors. An updated gene-disease association analysis using bioinformatics tools

scientific article published on 7 November 2015

COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

scientific article published on 05 May 2020

Capturing variation impact on molecular interactions: the IMEx Consortium mutations data set

Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers

scientific article

Clinical-Based and Expert Selection of Terms Related to Depression for Twitter Streaming and Language Analysis

scientific article published on 01 June 2020

Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text

scientific article

Comorbidity4j: a tool for interactive analysis of disease comorbidities over large patient datasets

scientific article published on 01 September 2019

Correction: Automatic Filtering and Substantiation of Drug Safety Signals

scientific article (publication date: 4 May 2012)

Correction: Drug-Induced Acute Myocardial Infarction: Identifying ‘Prime Suspects’ from Electronic Healthcare Records-Based Surveillance System

scientific article (publication date: 23 September 2013)

Detecting Signs of Depression in Tweets in Spanish: Behavioral and Linguistic Analysis

scientific article published on 27 June 2019

Digging for knowledge with information extraction

DisGeNET-RDF: harnessing the innovative power of the Semantic Web to explore the genetic basis of diseases

scientific article

DisGeNET-RDF: harnessing the innovative power of the Semantic Web to explore the genetic basis of diseases

DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze gene-disease networks

scientific article

DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants

scientific article

DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes

scientific article

Drug-induced acute myocardial infarction: identifying 'prime suspects' from electronic healthcare records-based surveillance system

scientific article (publication date: 2013)

Embracing the Dark Side: Computational Approaches to Unveil the Functionality of Genes Lacking Biological Annotation in Drug-Induced Liver Injury

article

Evaluating Behavioral and Linguistic Changes During Drug Treatment for Depression Using Tweets in Spanish: Pairwise Comparison Study

scientific article published on 18 December 2020

Evaluation of the proacrosin/acrosin system and its mechanism of activation in human sperm extracts.

scientific article

Exploring the Association of Cancer and Depression in Electronic Health Records: Combining Encoded Diagnosis and Mining Free-Text Clinical Notes

scientific article published in 2022

Exposing Provenance Metadata Using Different RDF Models ⬇️

Expression of epithelial cadherin in the human male reproductive tract and gametes and evidence of its participation in fertilization

scientific article

Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research

scientific article

From SNPs to pathways: integration of functional effect of sequence variations on models of cell signalling pathways

scientific article

GUILDify v2.0: A Tool to Identify Molecular Networks Underlying Human Diseases, Their Comorbidities and Their Druggable Targets

scientific article published on 07 March 2019

Gathering and exploring scientific knowledge in pharmacovigilance

scientific article (publication date: 2013)

Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseases

scientific article published in 2011

Genetic and Real-World Clinical Data, Combined with Empirical Validation, Nominate Jak-Stat Signaling as a Target for Alzheimer's Disease Therapeutic Development.

scientific article published on 8 May 2019

Genetic and functional characterization of disease associations explains comorbidity

scientific article published on 24 July 2017

Human diseases through the lens of network biology

scientific article published on 07 December 2012

Identification of Sequence Variants of Genes from Biomedical Literature

article

Identifying gene-specific variations in biomedical text

scientific article published in December 2007

Identifying temporal patterns in patient disease trajectories using dynamic time warping: A population-based study.

scientific article published on 9 March 2018

Improving data and knowledge management to better integrate health care and research.

scientific article

In silico models in drug development: where we are

scientific article published on 08 September 2018

Knowledge environments representing molecular entities for the virtual physiological human

scientific article published on September 2008

MedBioinformatics: Developing Integrative Bioinformatics Applications for Personalized Medicine

scientific article published in January 2016

Mining the modular structure of protein interaction networks

scientific article

Molecular and clinical diseasome of comorbidities in exacerbated COPD patients

scientific article published on 6 August 2015

Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data ⬇️

article published in 2018

Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data

Network medicine analysis of COPD multimorbidities

scientific article

Network, Transcriptomic and Genomic Features Differentiate Genes Relevant for Drug Response

article

OSIRIS: a tool for retrieving literature about sequence variants.

scientific article published on 31 July 2006

OSIRISv1.2: a named entity recognition system for sequence variants of genes in biomedical literature

scientific article published on 5 February 2008

Pancreatic cancer and autoimmune diseases: An association sustained by computational and epidemiological case-control approaches

scholarly article by Paulina Gomez-Rubio et al published 1 April 2019 in International Journal of Cancer

Pathway databases and tools for their exploitation: benefits, current limitations and challenges

scientific article (publication date: 2009)

Personalized respiratory medicine: exploring the horizon, addressing the issues. Summary of a BRN-AJRCCM workshop held in Barcelona on June 12, 2014

scientific article

Proximal Pathway Enrichment Analysis for Targeting Comorbid Diseases via Network Endopharmacology

scholarly article by Joaquim Aguirre-Plans et al published 22 June 2018 in Pharmaceuticals

PsyGeNET: a knowledge platform on psychiatric disorders and their genes

scientific article published on 15 September 2015

Publishing DisGeNET as nanopublications

article

Quantitative Systems Toxicology Modeling To Address Key Safety Questions in Drug Development: A Focus of the TransQST Consortium

scientific article published on 07 January 2020

Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API.

scientific article published on 18 December 2017

Reliable Granular References to Changing Linked Data

conference proceedings article

ResMarkerDB: a database of biomarkers of response to antibody therapy in breast and colorectal cancer.

scientific article published in January 2019

Reuse of EHRs to Support Clinical Research in a Hospital of Reference

scientific article published on January 2015

Slim-o-matic: a Semi-Automated Way to Generate Gene Ontology Slims ⬇️

article

Text mining and expert curation to develop a database on psychiatric diseases and their genes

scientific article published in January 2017

The BIOMEPOC Project: Personalized Biomarkers and Clinical Profiles in Chronic Obstructive Pulmonary Disease

article

The DisGeNET knowledge platform for disease genomics: 2019 update

scientific article published on 01 January 2020

The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research

scientific article published on 13 October 2020

The EU-ADR Web Platform: delivering advanced pharmacovigilance tools

scientific article published on 4 December 2012

The EU-ADR corpus: annotated drugs, diseases, targets, and their relationships

scientific article published on 25 April 2012

The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery ⬇️

scientific article published on 6 March 2014

Uncovering disease mechanisms through network biology in the era of Next Generation Sequencing

scientific article published on 15 April 2016

Using Electronic Health Records to Assess Depression and Cancer Comorbidities

scientific article

comoRbidity: an R package for the systematic analysis of disease comorbidities

scientific article published on 01 September 2018

psygenet2r: a R/Bioconductor package for the analysis of psychiatric disease genes

scientific article published on 17 August 2017

Paulina is supported by:

About Paulina

Help