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List of works by Trisha N. Davis

(P1) Technology Development in a Multidisciplinary Center

12 Calcium in Saccharomyces cerevisiae

12 Measuring the Proximity of Proteins in Living Cells by Fluorescence Resonance Energy Transfer between CFP and YFP

A Bifunctional Role for the UHRF1 UBL Domain in the Control of Hemi-methylated DNA-Dependent Histone Ubiquitylation

scientific article published on 01 November 2018

A high-efficiency method to replace essential genes with mutant alleles in yeast

scientific article

A protein interaction map for cell polarity development.

scientific article

An assay to measure the affinity of proteins for microtubules by quantitative fluorescent microscopy

scientific article published on 10 December 2010

An intein with genetically selectable markers provides a new approach to internally label proteins with GFP

scientific article

Analysis of a spindle pole body mutant reveals a defect in biorientation and illuminates spindle forces

scientific article

Assigning function to yeast proteins by integration of technologies.

scientific article

Bir1 is required for the tension checkpoint

scientific article published on 03 December 2008

Ca2+-calmodulin promotes survival of pheromone-induced growth arrest by activation of calcineurin and Ca2+-calmodulin-dependent protein kinase

scientific article published on September 1996

Ca2+Binding to Calmodulin and Its Role inSchizosaccharomyces pombeas Revealed by Mutagenesis and NMR Spectroscopy

scientific article published in Journal of Biological Chemistry

Can calmodulin function without binding calcium?

article

Cdk1 Phosphorylation of the Dam1 Complex Strengthens Kinetochore-Microtubule Attachments

scientific article published on 08 September 2020

Chl4p and iml3p are two new members of the budding yeast outer kinetochore

scientific article

Complete nucleotide sequence of the gene encoding the regulatory subunit of 3',5'-cyclic AMP-dependent protein kinase from the yeast Saccharomyces cerevisiae

scientific article published on January 1987

Computationally designed high specificity inhibitors delineate the roles of BCL2 family proteins in cancer

scientific article

Cooperation of the Dam1 and Ndc80 kinetochore complexes enhances microtubule coupling and is regulated by aurora B.

scientific article

Corrigendum: Design of a hyperstable 60-subunit protein icosahedron

scientific article published on 19 October 2016

Coupling unbiased mutagenesis to high-throughput DNA sequencing uncovers functional domains in the Ndc80 kinetochore protein of Saccharomyces cerevisiae

scientific article published on 05 July 2013

Coverslip Cleaning and Functionalization for Total Internal Reflection Fluorescence Microscopy

scientific article published on 2 May 2016

Ctf3p, the Mis6 budding yeast homolog, interacts with Mcm22p and Mcm16p at the yeast outer kinetochore

scientific article

Design of a hyperstable 60-subunit protein dodecahedron. [corrected]

scientific article published on 15 June 2016

Determining protein complex structures based on a Bayesian model of in vivo Förster resonance energy transfer (FRET) data

scientific article

Direct measurement of the strength of microtubule attachment to yeast centrosomes.

scientific article

Direct physical study of kinetochore-microtubule interactions by reconstitution and interrogation with an optical force clamp

scientific article

Discovery and Visualization of Uncharacterized Drug-Protein Adducts Using Mass Spectrometry

scientific article published on 20 February 2022

Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress

scientific article

First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study

scientific article published on 22 May 2019

Fluorescence resonance energy transfer using color variants of green fluorescent protein

scientific article

Higher-order oligomerization of Spc110p drives γ-tubulin ring complex assembly.

scientific article

Human Ska complex and Ndc80 complex interact to form a load-bearing assembly that strengthens kinetochore-microtubule attachments

scientific article published on 27 February 2018

Identification of Saccharomyces cerevisiae spindle pole body remodeling factors

scientific article

Identification of Wiskott-Aldrich syndrome protein (WASP) binding sites on the branched actin filament nucleator Arp2/3 complex

scientific article published on 31 January 2018

Identification of a human centrosomal calmodulin-binding protein that shares homology with pericentrin

scientific article

In vivo analysis of cohesin architecture using FRET in the budding yeast Saccharomyces cerevisiae

scientific article

In-line separation by capillary electrophoresis prior to analysis by top-down mass spectrometry enables sensitive characterization of protein complexes

scientific article

Insights into the kinetochore.

scientific article

Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast

scientific article published on 29 May 2013

Isolation of the yeast calmodulin gene: calmodulin is an essential protein

scientific article

Isotope signatures allow identification of chemically cross-linked peptides by mass spectrometry: a novel method to determine interresidue distances in protein structures through cross-linking

scientific article published on July 2010

Kinetochore biorientation in Saccharomyces cerevisiae requires a tightly folded conformation of the Ndc80 complex

scientific article

Kinetochore-associated Stu2 promotes chromosome biorientation in vivo

scientific article published on 04 October 2019

Kinetochores require oligomerization of Dam1 complex to maintain microtubule attachments against tension and promote biorientation.

scientific article

Kinetochores' gripping feat: conformational wave or biased diffusion?

scientific article published on 15 October 2010

Kip3, the yeast kinesin-8, is required for clustering of kinetochores at metaphase

scientific article

Kojak: efficient analysis of chemically cross-linked protein complexes.

scientific article

Laterally attached kinetochores recruit the checkpoint protein Bub1, but satisfy the spindle checkpoint

scientific article

Localization and orientation of the gamma-tubulin small complex components using protein tags as labels for single particle EM.

scientific article published on 31 August 2009

Localization of proteins that are coordinately expressed with Cln2 during the cell cycle

scientific article

Mason: a JavaScript web site widget for visualizing and comparing annotated features in nucleotide or protein sequences

scientific article

Microtubule nucleating gamma-TuSC assembles structures with 13-fold microtubule-like symmetry

scientific article

Mitosis puts sisters in a strained relationship: force generation at the kinetochore

scientific article published on 30 April 2012

Mlc1p Is a Light Chain for the Unconventional Myosin Myo2p in Saccharomyces cerevisiae ⬇️

scientific article published on August 10, 1998

Mps1 phosphorylation of Dam1 couples kinetochores to microtubule plus ends at metaphase

scientific article

Mutational analysis of calmodulin in Saccharomyces cerevisiae

scientific article published on June 1992

Native capillary isoelectric focusing for the separation of protein complex isoforms and subcomplexes

scientific article

Nonsense mutants of the lipid-containing bacteriophage PR4

scientific article published on 01 April 1983

Novel phosphorylation states of the yeast spindle pole body

scientific article published on 08 October 2018

Phosphoregulation and depolymerization-driven movement of the Dam1 complex do not require ring formation

scientific article

Phosphorylation of the chromosomal passenger protein Bir1 is required for localization of Ndc10 to the spindle during anaphase and full spindle elongation

scientific article

Preparation of Reactions for Imaging with Total Internal Reflection Fluorescence Microscopy

scientific article

ProXL (Protein Cross-Linking Database): A Platform for Analysis, Visualization, and Sharing of Protein Cross-Linking Mass Spectrometry Data

scientific article

Protein Localization by Cell Imaging

Protein localization in proteomics

scientific article published on February 2004

Proxl (Protein Cross-Linking Database): A Public Server, QC Tools, and Other Major Updates

scientific article published on 19 December 2018

Purification of Fluorescently Labeled Saccharomyces cerevisiae Spindle Pole Bodies

scientific article published on January 2016

Reconstitution Of Microtubule-driven Movement and Force Production by the Ndc80 Kinetochore Complex

article

Reconstitution and characterization of budding yeast gamma-tubulin complex

scientific article

Reconstitution and functional analysis of kinetochore subcomplexes

scientific article published on January 2010

Reconstitution reveals two paths of force transmission through the kinetochore

scientific article published on 14 May 2020

Regulation of outer kinetochore Ndc80 complex-based microtubule attachments by the central kinetochore Mis12/MIND complex

scientific article

Ring closure activates yeast γTuRC for species-specific microtubule nucleation

scientific article

Rings, bracelets, sleeves, and chevrons: new structures of kinetochore proteins

scientific article published on August 2007

Single-Molecule Total Internal Reflection Fluorescence Microscopy

scientific article published on 2 May 2016

SnipViz: a compact and lightweight web site widget for display and dissemination of multiple versions of gene and protein sequences

scientific article

Structural analysis of wild-type and mutant yeast calmodulins by limited proteolysis and electrospray ionization mass spectrometry ⬇️

scientific article published on April 1, 1992

Structure of γ-tubulin small complex based on a cryo-EM map, chemical cross-links, and a remotely related structure

scientific article published on 8 March 2016

Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology

scientific article

Tension applied through the Dam1 complex promotes microtubule elongation providing a direct mechanism for length control in mitosis

scientific article

The 110-kD spindle pole body component of Saccharomyces cerevisiae is a phosphoprotein that is modified in a cell cycle-dependent manner

scientific article

The Dam1 kinetochore complex harnesses microtubule dynamics to produce force and movement

scientific article

The Ndc80 complex bridges two Dam1 complex rings ⬇️

scientific article published on 13 February 2017

The Ndc80 kinetochore complex directly modulates microtubule dynamics

scientific article

The Ndc80 kinetochore complex forms load-bearing attachments to dynamic microtubule tips via biased diffusion

scientific article

The Proteome Folding Project: proteome-scale prediction of structure and function

scientific article

The Saccharomyces cerevisiae spindle pole body is a dynamic structure

scientific article published on 3 May 2003

The Yeast Resource Center Public Data Repository

scientific article

The Yeast Resource Center Public Image Repository: A large database of fluorescence microscopy images

scientific article

The centrosomal proteins pericentrin and kendrin are encoded by alternatively spliced products of one gene

scientific article

The essential Ubc4/Ubc5 function in yeast is HECT E3-dependent, and RING E3-dependent pathways require only monoubiquitin transfer by Ubc4.

scientific article

The fork head transcription factor Hcm1p participates in the regulation of SPC110, which encodes the calmodulin-binding protein in the yeast spindle pole body.

scientific article

The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling

scientific article

The molecular architecture of the yeast spindle pole body core determined by Bayesian integrative modeling

scientific article

The organization of the core proteins of the yeast spindle pole body

scientific article

The structure of the gamma-tubulin small complex: implications of its architecture and flexibility for microtubule nucleation

scientific article

The virion of the lipid-containing bacteriophage PR4

scientific article published on 01 July 1982

Tight bending of the Ndc80 complex provides intrinsic regulation of its binding to microtubules

scientific article published on 02 May 2019

Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth

scientific article

Vesicle docking to the spindle pole body is necessary to recruit the exocyst during membrane formation in Saccharomyces cerevisiae

scientific article

Visualization and dissemination of multidimensional proteomics data comparing protein abundance during Caenorhabditis elegans development

scientific article

What's new with calcium?

scientific article published on November 13, 1992

XMAP215 and γ-tubulin additively promote microtubule nucleation in purified solutions

scientific article published on 29 July 2020

Yeast Mps1p phosphorylates the spindle pole component Spc110p in the N-terminal domain

scientific article

[21] Isolation of the yeast calmodulin gene using synthetic oligonucleotide probes

article

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