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List of works by Stephane Rombauts

'Nebbiolo' genome assembly allows surveying the occurrence and functional implications of genomic structural variations in grapevines (Vitis vinifera L.).

scientific article published on 24 February 2022

A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes.

scientific article

A Snapshot of the Emerging Tomato Genome Sequence

A genomic analysis and transcriptomic atlas of gene expression in Psoroptes ovis reveals feeding- and stage-specific patterns of allergen expression

scientific article published on 23 October 2019

A link between host plant adaptation and pesticide resistance in the polyphagous spider mite Tetranychus urticae

scientific article published on 17 December 2012

A molecular timetable for apical bud formation and dormancy induction in poplar.

scientific article

A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3).

scientific article published on 18 September 2017

A symbiotic plant peroxidase involved in bacterial invasion of the tropical legume Sesbania rostrata. ⬇️

scientific article

AFLPinSilico, simulating AFLP fingerprints

scientific article published on 01 April 2003

AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling

scientific article published on 23 December 2009

Aging in legume symbiosis. A molecular view on nodule senescence in Medicago truncatula

scientific article

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies

scientific article

Analysis of RNA-Seq data with TopHat and Cufflinks for genome-wide expression analysis of jasmonate-treated plants and plant cultures

scientific article

Analysis of the Olive Fruit Fly Bactrocera oleae Transcriptome and Phylogenetic Classification of the Major Detoxification Gene Families

scientific article (publication date: 2013)

Annotation of a 95-kb Populus deltoides genomic sequence reveals a disease resistance gene cluster and novel class I and class II transposable elements

scientific article published on 14 April 2004

CLE peptides control Medicago truncatula nodulation locally and systemically.

scientific article published on 26 March 2010

Catalase deficiency drastically affects gene expression induced by high light in Arabidopsis thaliana

scientific article published in July 2004

CathaCyc, a metabolic pathway database built from Catharanthus roseus RNA-Seq data

scientific article

Characterization of two distinct DP-related genes from Arabidopsis thaliana

scientific article published in December 2000

Comparative transcriptome analysis reveals common and specific tags for root hair and crack-entry invasion in Sesbania rostrata. ⬇️

scientific article

Complex Evolutionary Dynamics of Massively Expanded Chemosensory Receptor Families in an Extreme Generalist Chelicerate Herbivore

scientific article

Computational approaches to identify promoters and cis-regulatory elements in plant genomes

scientific article

Dietary shifts have consequences for the repertoire of allergens produced by the European house dust mite.

scientific article

Draft Genome Assembly of the False Spider Mite

scientific article published on 07 February 2019

Draft Genome Assembly of the Poultry Red Mite,

scientific article published on 08 November 2018

Draft Genome Assembly of the Sheep Scab Mite, Psoroptes ovis.

scientific article published on 19 April 2018

EST data suggest that poplar is an ancient polyploid

scientific article

Erratum for Navia et al., "Draft Genome Assembly of the False Spider Mite Brevipalpus yothersi"

scientific article published on 03 July 2019

Flemish soils contain rhizobia partners for Northwestern Europe‐adapted soybean cultivars

scientific article published on 25 February 2022

Functional modules in the Arabidopsis core cell cycle binary protein-protein interaction network

scientific article

Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage

scientific article

Gene prediction and gene classes in Arabidopsis thaliana

scientific article published in March 2000

GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts

scientific article

Genome Analyses of the Microalga Picochlorum Provide Insights into the Evolution of Thermotolerance in the Green Lineage

scientific article published on 01 September 2018

Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features

scientific article

Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5.

scientific article

Genome-wide analysis of core cell cycle genes in Arabidopsis

scientific article

Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis

scientific article

Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants

scientific article published in May 2003

Genomic evidence that a sexually selected trait captures genome-wide variation and facilitates the purging of genetic load

scientific article published in 2022

Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

scientific article

How many genes are there in plants (... and why are they there)?

scientific article

In silico cloning of genes encoding neuropeptides, neurohormones and their putative G-protein coupled receptors in a spider mite

scientific article published on 28 December 2011

Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes

scholarly article

Microarray analysis of E2Fa-DPa-overexpressing plants uncovers a cross-talking genetic network between DNA replication and nitrogen assimilation

scientific article published on 2 September 2003

Moss transcriptome and beyond

scientific article published in December 2002

OMSim: a simulator for optical map data.

scientific article

Overview of tomato (Solanum lycopersicum) candidate pathogen recognition genes reveals important Solanum R locus dynamics.

scientific article

Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp

scientific article published on 06 January 2021

Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions

scientific article (publication date: 23 July 2013)

Search for nodulation-related CLE genes in the genome of Glycine max.

scientific article

Seven in absentia proteins affect plant growth and nodulation in Medicago truncatula.

scientific article published on 3 July 2008

Systematic analysis of cell-cycle gene expression during Arabidopsis development

scientific article published on 11 April 2009

Systematic localization of the Arabidopsis core cell cycle proteins reveals novel cell division complexes

scientific article published on 16 December 2009

The 'TranSeq' 3'-end sequencing method for high-throughput transcriptomics and gene space refinement in plant genomes

scientific article published on 29 July 2018

The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization

article

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

scientific article

The Medicago genome provides insight into the evolution of rhizobial symbioses

scientific article

The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

scientific article

The absence of the caffeine synthase gene is involved in the naturally decaffeinated status of Coffea humblotiana, a wild species from Comoro archipelago

scientific article published on 14 April 2021

The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments

scientific article published on 31 August 2021

The metabolic blueprint of Phaeodactylum tricornutum reveals a eukaryotic Entner-Doudoroff glycolytic pathway

scientific article

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

scientific article

Transcriptome analysis during cell division in plants

scientific article

Transcriptomic analysis of the poultry red mite, Dermanyssus gallinae, across all stages of the lifecycle

scientific article published on 07 April 2021

Virus-host coexistence in phytoplankton through the genomic lens: Supplementary Material

scholarly article published 7 January 2019

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