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List of works by Rod A. Wing

A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium).

scientific article

A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome

scientific article

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

scientific article

A bacterial artificial chromosome library for soybean PI 437654 and identification of clones associated with cyst nematode resistance

scientific article

A bacterial artificial chromosome library for sugarcane

scientific article

A conserved repetitive DNA element located in the centromeres of cereal chromosomes

scientific article

A detailed RFLP map of Sorghum bicolor x S. propinquum, suitable for high-density mapping, suggests ancestral duplication of Sorghum chromosomes or chromosomal segments

scientific article published on 01 March 1994

A draft physical map of a D-genome cotton species (Gossypium raimondii)

scientific article

A fine physical map of the rice chromosome 4.

scientific article published on May 2002

A fruitful outcome to the papaya genome project

scientific article published on 6 June 2008

A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

scientific article published on 06 October 2020

A global assembly of cotton ESTs.

scientific article published on 14 February 2006

A large-insert (130 kbp) bacterial artificial chromosome library of the rice blast fungus Magnaporthe grisea: genome analysis, contig assembly, and gene cloning

scientific article published on June 1997

A lineage-specific centromere retrotransposon in Oryza brachyantha

scientific article

A marker-dense physical map of the Bradyrhizobium japonicum genome

scientific article

A new resource for cereal genomics: 22K barley GeneChip comes of age.

scientific article published in March 2004

A phylogenetic analysis of indel dynamics in the cotton genus

scientific article

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure

scientific article

A physical, genetic and functional sequence assembly of the barley genome ⬇️

scientific article published on October 17, 2012

A platinum standard pan-genome resource that represents the population structure of Asian rice

scientific article published on 07 April 2020

A rapid procedure for the isolation of C0t-1 DNA from plants

article

A reference genome for common bean and genome-wide analysis of dual domestications

scientific article published on 8 June 2014

A single molecule scaffold for the maize genome

scientific article

A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication

scientific article published on 8 May 2017

A versatile transposon-based activation tag vector system for functional genomics in cereals and other monocot plants.

scientific article published on 9 November 2007

Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

scientific article

Aflatoxin-free transgenic maize using host-induced gene silencing

scientific article published on 10 March 2017

Aluminum tolerance in maize is associated with higher MATE1 gene copy number

scientific article published on 11 March 2013

An integrated physical and genetic map of the rice genome

scientific article

An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research.

scientific article

Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization

scientific article

Assembly and validation of the genome of the nonmodel basal angiosperm Amborella

scientific article published in December 2013

Australian Oryza: Utility and Conservation

article

BAC Library Development and Clone Characterization for Dormancy-Responsive DREB4A, DAM, and FT from Leafy Spurge (Euphorbia esula) Identifies Differential Splicing and Conserved Promoter Motifs

article

BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea

scientific article published in July 2004

BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution

scientific article

Bacterial artificial chromosome (BAC) library resource for positional cloning of pest and disease resistance genes in cassava (Manihot esculenta Crantz).

scientific article published in November 2004

Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data

scientific article

Candidate gene database and transcript map for peach, a model species for fruit trees.

scientific article

Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes

scientific article published on 01 October 2007

Chromosome-scale pearl millet genomes reveal CLAMT1b as key determinant of strigolactone pattern and Striga susceptibility

scientific article published in 2024

Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies

scientific article published on 3 February 2014

Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type).

scientific article published on 4 March 2007

Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses

scientific article

Comparative population genetics of the panicoid grasses: sequence polymorphism, linkage disequilibrium and selection in a diverse sample of sorghum bicolor.

scientific article published on May 2004

Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes

scholarly article

Comparative sequence analysis of the Ghd7 orthologous regions revealed movement of Ghd7 in the grass genomes

scientific article

Comparative sequence analysis of the SALT OVERLY SENSITIVE1 orthologous region in Thellungiella halophila and Arabidopsis thaliana

scientific article published on 28 May 2009

Comparison of Oryza sativa and Oryza brachyantha Genomes Reveals Selection-Driven Gene Escape from the Centromeric Regions

scientific article published on 02 July 2018

Comparison of peach and Arabidopsis genomic sequences: fragmentary conservation of gene neighborhoods

scientific article published in April 2003

Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species

scientific article

Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP

scientific article

Conservation and purifying selection of transcribed genes located in a rice centromere

scientific article published on 19 August 2011

Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor

scientific article published on November 1994

Construction and characterization of a bovine bacterial artificial chromosome library

scientific article published on September 1995

Construction and utility of 10-kb libraries for efficient clone-gap closure for rice genome sequencing

scientific article

Construction of BAC libraries from two apomictic grasses to study the microcolinearity of their apospory-specific genomic regions

scientific article

Construction of a 1.2-Mb contig including the citrus tristeza virus resistance gene locus using a bacterial artificial chromosome library of Poncirus trifoliata (L.) Raf.

scientific article published in June 2001

Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: a new resource for plant comparative genomics.

scientific article

Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey

scientific article published on 3 May 2006

Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza

scientific article published on 28 February 2008

Construction, characterization, and preliminary BAC-end sequence analysis of a bacterial artificial chromosome library of the tea plant (Camellia sinensis).

scientific article published on 23 December 2010

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

scientific article published on 8 January 2007

DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements

scientific article published on 6 May 2016

DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses

scientific article published on 07 September 2016

Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods

scientific article published on 8 December 2006

Detailed analysis of a contiguous 22-Mb region of the maize genome

scientific article

Development and validation of cross-transferable and polymorphic DNA markers for detecting alien genome introgression in Oryza sativa from Oryza brachyantha

scientific article published on 14 June 2016

Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

scientific article published in October 2006

Diploid/polyploid syntenic shuttle mapping and haplotype-specific chromosome walking toward a rust resistance gene (Bru1) in highly polyploid sugarcane (2n approximately 12x approximately 115).

scientific article published on 30 August 2008

Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3.

scientific article

Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

scientific article

Dynamic Oryza Genomes: Repetitive DNA Sequences as Genome Modeling Agents

Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set.

scientific article

Dynamic intra-japonica subspecies variation and resource application

scientific article

Efficacy of clone fingerprinting methodologies

article

Efficient insertional mutagenesis in rice using the maize En/Spm elements

scientific article published in December 2005

Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution

scientific article

Erratum: Genome sequence of the palaeopolyploid soybean

scientific article published in Nature

Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza

scientific article published on 06 December 2007

Evolution of a complex locus for terpene biosynthesis in solanum

scientific article published on 11 June 2013

Evolution of genes and genomes on the Drosophila phylogeny

scientific article

Evolution of plant genome architecture

scientific article

Evolutionary analysis of the SUB1 locus across the Oryza genomes

scientific article published on 07 February 2017

Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza.

scientific article published on 30 August 2007

Evolutionary history and positional shift of a rice centromere

scientific article

Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis

scientific article

Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat.

scientific article

Extensive gene conversion drives the concerted evolution of paralogous copies of the SRY gene in European rabbits.

scientific article

Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti.

scientific article

Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63

scientific article

Fifteen million years of evolution in the Oryza genus shows extensive gene family expansion

scientific article published on 8 November 2013

Functional genomics of cell elongation in developing cotton fibers

scientific article published in April 2004

Gene expression induced by physical impedance in maize roots

scientific article

Gene-based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: an integration of the BMc series

scientific article

Genetic control of seed shattering during African rice domestication

scientific article published on 04 June 2018

Genetic, physical, and informatics resources for maize. On the road to an integrated map.

scientific article

Genome and Comparative Transcriptomics of African Wild Rice Oryza longistaminata Provide Insights into Molecular Mechanism of Rhizomatousness and Self-Incompatibility

scientific article published on 7 September 2015

Genome and evolution of the shade-requiring medicinal herb Panax ginseng. ⬇️

scientific article published on 31 March 2018

Genome dynamics and evolution of the Mla (powdery mildew) resistance locus in barley

scientific article published in August 2002

Genome puzzle master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences

scientific article

Genome sequence of the model rice variety KitaakeX

scientific article published on 27 November 2019

Genome sequence of the palaeopolyploid soybean

scientific article

Genome studies and molecular genetics: understanding the functional genome based on the rice model

article

Genome-wide association mapping of date palm fruit traits

scientific article published on 15 October 2019

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.

scientific article

Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere

scientific article published on 28 July 2006

Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass

scientific article published on 27 January 2021

Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives

scientific article

Genomic structure and evolution of the Pi2/9 locus in wild rice species

scientific article published on 14 March 2010

Genomic variation in 3,010 diverse accessions of Asian cultivated rice.

scientific article published on 25 April 2018

Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids

scientific article

Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping

scientific article published on 14 January 2014

Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors

scholarly article

Harvesting rice's dispensable genome

scientific article published on October 2015

High occurrence of functional new chimeric genes in survey of rice chromosome 3 short arm genome sequences

scientific article published on January 2013

Human gut microbiota in obesity and after gastric bypass

scientific article (publication date: 17 February 2009)

In-depth sequence analysis of the tomato chromosome 12 centromeric region: identification of a large CAA block and characterization of pericentromere retrotranposons

scientific article published on 17 June 2005

Incongruent patterns of local and global genome size evolution in cotton

scientific article published on 15 July 2004

Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum

scientific article published on 8 August 2006

Integration of the Draft Sequence and Physical Map as a Framework for Genomic Research in Soybean (Glycine max (L.) Merr.) and Wild Soybean (Glycine soja Sieb. and Zucc.).

scientific article

Isolation and expression of an anther-specific gene from tomato

scientific article published in June 1989

Isolation of molecular markers from specific chromosomal intervals using DNA pools from existing mapping populations

scientific article published on December 1991

JOINTLESS is a MADS-box gene controlling tomato flower abscission zone development

scientific article published in August 2000

Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction

scientific article

Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile

scientific article

Localization of jointless-2 gene in the centromeric region of tomato chromosome 12 based on high resolution genetic and physical mapping

scientific article published on 20 September 2003

Long-Range and Targeted Ectopic Recombination between the Two Homeologous Chromosomes 11 and 12 in Oryza Species

article

LysM-type mycorrhizal receptor recruited for rhizobium symbiosis in nonlegume Parasponia

scientific article

MGOS: A resource for studying Magnaporthe grisea and Oryza sativa interactions

scientific article published in October 2006

Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice

scientific article published on 9 March 2007

Making a living while starving in the dark: metagenomic insights into the energy dynamics of a carbonate cave

scientific article

Map-based cloning in crop plants. Tomato as a model system: I. Genetic and physical mapping of jointless

article

Map-based cloning in crop plants: tomato as a model system II. Isolation and characterization of a set of overlapping yeast artificial chromosomes encompassing the jointless locus

scientific article published on September 1994

Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2).

scientific article

Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains

scientific article

Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium).

scientific article published on 25 April 2007

Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes

scientific article

Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps.

scientific article

Mitochondrial plastid DNA can cause DNA barcoding paradox in plants

scientific article published on 09 April 2020

New resources for marine genomics: bacterial artificial chromosome libraries for the eastern and Pacific oysters (Crassostrea virginica and C. gigas)

scientific article published on 11 August 2006

Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds.

scientific article

Ortholog alleles at Xa3/Xa26 locus confer conserved race-specific resistance against Xanthomonas oryzae in rice

scientific article published on 19 September 2011

Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum

scientific article published on 3 June 2010

PCR amplification from single seeds, facilitating DNA marker-assisted breeding

scientific article published on May 1993

Physical and genetic structure of the maize genome reflects its complex evolutionary history

scientific article

Plant centromere organization: a dynamic structure with conserved functions

scientific article published on February 2007

Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ.

scientific article

Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

scholarly article published in Nature Genetics

Publisher correction: Young inversion with multiple linked QTLs under selection in a hybrid zone

scientific article published on 01 October 2017

RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection

scientific article

Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome

scientific article published on 10 November 2005

Rapid evolution of protein diversity by de novo origination in Oryza

scientific article published on 11 March 2019

Rate variation among nuclear genes and the age of polyploidy in Gossypium

scientific article published on 2 April 2003

Recurrent sequence exchange between homeologous grass chromosomes

scientific article

Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement

scientific article

Resolution of fluorescence in-situ hybridization mapping on rice mitotic prometaphase chromosomes, meiotic pachytene chromosomes and extended DNA fibers

scientific article published on 01 January 2002

RiTE database: a resource database for genus-wide rice genomics and evolutionary biology

scientific article published on 22 July 2015

Rice SNP-seek database update: new SNPs, indels, and queries

scientific article

Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

scientific article

Sequence analysis of the long arm of rice chromosome 11 for rice-wheat synteny

scientific article published on 14 April 2004

Sequence and analysis of the tomato JOINTLESS locus

scientific article

Sequence composition and genome organization of maize.

scholarly article

Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species

scientific article

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome

scientific article published on 07 August 2015

Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice

scientific article

Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts

scientific article

Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza

scientific article

Species trees from highly incongruent gene trees in rice

scientific article published on 21 September 2009

Structural features of the rice chromosome 4 centromere

scientific article published on 02 April 2004

Structural variants in 3000 rice genomes

scientific article published on 16 April 2019

Structure and architecture of the maize genome.

scientific article published in December 2005

The 19 genomes of Drosophila: a BAC library resource for genus-wide and genome-scale comparative evolutionary research

scientific article

The Amborella genome: an evolutionary reference for plant biology

scientific article

The Ashbya gossypii Genome as a Tool for Mapping the Ancient Saccharomyces cerevisiae Genome

scientific article

The B73 Maize Genome: Complexity, Diversity, and Dynamics

scientific article

The Cardamine hirsuta genome offers insight into the evolution of morphological diversity.

scientific article published on 31 October 2016

The Dark Side of the Genome: Revealing the Native Transposable Element/Repeat Content of Eukaryotic Genomes

scientific article published on 28 September 2016

The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question

scientific article

The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza

scientific article

The Promoter Signatures in Rice LEA Genes Can Be Used to Build a Co-expressing LEA Gene Network

article

The Reference Genome of the Halophytic Plant Eutrema salsugineum

scientific article (publication date: 2013)

The Rice Annotation Project Database (RAP-DB): 2008 update

scientific article

The Rice Paradox: Multiple Origins but Single Domestication in Asian Rice

scientific article

The asparagus genome sheds light on the origin and evolution of a young Y chromosome

scientific article published on 2 November 2017

The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis

scientific article published on 26 August 2006

The genome of Theobroma cacao

scientific article

The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.

scientific article

The impact and origin of copy number variations in the Oryza species

scientific article

The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species

scientific article published in September 2005

The physical and genetic framework of the maize B73 genome

scientific article

The rice genome revolution: from an ancient grain to Green Super Rice

scientific article published on 01 August 2018

The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice

scientific article

Toward a Cytological Characterization of the Rice Genome ⬇️

scientific article published on December 1, 2001

Toward closing rice telomere gaps: mapping and sequence characterization of rice subtelomere regions

scientific article published on 18 June 2005

Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the sorghum genome as a foundation

scientific article published in March 2001

Tracing ancestor rice of Suriname Maroons back to its African origin

scientific article

Transposable element distribution, abundance and role in genome size variation in the genus Oryza

scientific article published on 29 August 2007

Transposons play an important role in the evolution and diversification of centromeres among closely related species

scientific article

Uneven chromosome contraction and expansion in the maize genome.

scientific article

Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region

scientific article published in January 2006

Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution

scientific article

Whole-genome validation of high-information-content fingerprinting

scientific article published in September 2005

Young inversion with multiple linked QTLs under selection in a hybrid zone.

scientific article

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