List of works - Tao Liu

A comprehensive view of nuclear receptor cancer cistromes

scientific article published on 22 September 2011

An amino terminal phosphorylation motif regulates intranuclear compartmentalization of Olig2 in neural progenitor cells

scientific article

An unusual haplotype structure on human chromosome 8p23 derived from the inversion polymorphism

scientific article published in October 2008

Broad chromosomal domains of histone modification patterns in C. elegans

scientific article

CEAS: cis-regulatory element annotation system

scientific article

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

scientific article

ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline

scientific article

Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse

scientific article

Cistrome: an integrative platform for transcriptional regulation studies

scientific article

CistromeFinder for ChIP-seq and DNase-seq data reuse

scientific article

CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human

scientific article

Comparative analysis of metazoan chromatin organization

scientific article

Computational dissection of Arabidopsis smRNAome leads to discovery of novel microRNAs and short interfering RNAs associated with transcription start sites

scientific article published on 02 February 2011

Differential chromatin marking of introns and expressed exons by H3K36me3.

scientific article published on February 2009

Disease-Associated Single-Nucleotide Polymorphisms From Noncoding Regions in Juvenile Idiopathic Arthritis Are Located Within or Adjacent to Functional Genomic Elements of Human Neutrophils and CD4+ T Cells

scientific article published on July 2015

EZH2 oncogenic activity in castration-resistant prostate cancer cells is Polycomb-independent

scientific article

Genome-wide identification and differential analysis of translational initiation

scientific article published on 23 November 2017

Identifying ChIP-seq enrichment using MACS.

scientific article published on 30 August 2012

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

scientific article

MUC1-C integrates type II interferon and chromatin remodeling pathways in immunosuppression of prostate cancer

scientific article published on 01 February 2022

MicroRNA-encoding long non-coding RNAs

scientific article

Model-based analysis of ChIP-Seq (MACS)

scientific article

Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray

scientific article

Regional centromeres in the yeast Candida lusitaniae lack pericentromeric heterochromatin.

scientific article

Robust repression of tRNA gene transcription during stress requires protein arginine methylation

scientific article published on 3 June 2019

Single cell transcriptomics reveals lineage trajectory of retinal ganglion cells in wild-type and Atoh7-null retinas

scientific article published on 5 March 2021

Systematic evaluation of factors influencing ChIP-seq fidelity

scientific article

Using MACS to identify peaks from ChIP-Seq data

scientific article

List of works by Tao Liu

A comprehensive view of nuclear receptor cancer cistromes

An amino terminal phosphorylation motif regulates intranuclear compartmentalization of Olig2 in neural progenitor cells

An unusual haplotype structure on human chromosome 8p23 derived from the inversion polymorphism

Broad chromosomal domains of histone modification patterns in C. elegans

CEAS: cis-regulatory element annotation system

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline

Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse

Cistrome: an integrative platform for transcriptional regulation studies

CistromeFinder for ChIP-seq and DNase-seq data reuse

CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human

Comparative analysis of metazoan chromatin organization

Computational dissection of Arabidopsis smRNAome leads to discovery of novel microRNAs and short interfering RNAs associated with transcription start sites

Differential chromatin marking of introns and expressed exons by H3K36me3.

Disease-Associated Single-Nucleotide Polymorphisms From Noncoding Regions in Juvenile Idiopathic Arthritis Are Located Within or Adjacent to Functional Genomic Elements of Human Neutrophils and CD4+ T Cells

EZH2 oncogenic activity in castration-resistant prostate cancer cells is Polycomb-independent

Genome-wide identification and differential analysis of translational initiation

Identifying ChIP-seq enrichment using MACS.

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

MUC1-C integrates type II interferon and chromatin remodeling pathways in immunosuppression of prostate cancer

MicroRNA-encoding long non-coding RNAs

Model-based analysis of ChIP-Seq (MACS)

Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray

Regional centromeres in the yeast Candida lusitaniae lack pericentromeric heterochromatin.

Robust repression of tRNA gene transcription during stress requires protein arginine methylation

Single cell transcriptomics reveals lineage trajectory of retinal ganglion cells in wild-type and Atoh7-null retinas

Systematic evaluation of factors influencing ChIP-seq fidelity

Using MACS to identify peaks from ChIP-Seq data