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List of works by Chris Bowler

A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA

scientific article published on 7 December 2022

A CURLY LEAF homologue controls both vegetative and reproductive development of tomato plants

scientific article published on 4 February 2016

A diatom gene regulating nitric-oxide signaling and susceptibility to diatom-derived aldehydes

scientific article published on 5 June 2008

A gene in the process of endosymbiotic transfer

scientific article

A genomics approach reveals the global genetic polymorphism, structure and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum

A genomics approach reveals the global genetic polymorphism, structure, and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum

scientific article published on 17 October 2019

A global ocean atlas of eukaryotic genes.

scientific article published on 25 January 2018

A holistic approach to marine eco-systems biology

scientific article

A model for carbohydrate metabolism in the diatom Phaeodactylum tricornutum deduced from comparative whole genome analysis

scientific article

A modified Gateway cloning strategy for overexpressing tagged proteins in plants

scientific article published on 22 January 2008

A novel protein, ubiquitous in marine phytoplankton, concentrates iron at the cell surface and facilitates uptake

scientific article published on 31 December 2014

A potential role for epigenetic processes in the acclimation response to elevated pCO2 in the model diatom Phaeodactylum tricornutum

A stress surveillance system based on calcium and nitric oxide in marine diatoms.

scientific article

AUREOCHROME1a-mediated induction of the diatom-specific cyclin dsCYC2 controls the onset of cell division in diatoms (Phaeodactylum tricornutum)

scientific article (publication date: 2013)

Adhesion molecules from the diatom Phaeodactylum tricornutum (Bacillariophyceae): genomic identification by amino-acid profiling and in vivo analysis

scientific article published on 04 August 2014

An atypical member of the light-harvesting complex stress-related protein family modulates diatom responses to light

scientific article

An ecological and evolutionary context for integrated nitrogen metabolism and related signaling pathways in marine diatoms

scientific article

An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum.

scientific article published on 20 May 2015

Being Selective in the Prochlorococcus Collective

scientific article published on 01 April 2014

Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions

scientific article published on 07 September 2020

Bioprospecting marine plankton

scientific article (publication date: 14 November 2013)

CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana

scientific article published on 22 June 2006

Calcium/calmodulin-dependent and -independent phytochrome signal transduction pathways

scientific article published on 01 June 1993

Cellular responses associated with ROS production and cell fate decision in early stress response to iron limitation in the diatom Thalassiosira pseudonana

scientific article

Central role for ferritin in the day/night regulation of iron homeostasis in marine phytoplankton.

scientific article

Characterisation of alleles of tomato light signalling genes generated by TILLING.

scientific article published on 16 May 2012

Characterization of two members of the cryptochrome/photolyase family from Ostreococcus tauri provides insights into the origin and evolution of cryptochromes

scientific article published in October 2010

Chimeric origins of ochrophytes and haptophytes revealed through an ancient plastid proteome

scientific article published on 12 May 2017

Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage

scientific article published on 25 January 2007

Chloroplast-mitochondria cross-talk in diatoms

scientific article published on 20 January 2012

Chromatin techniques for plant cells

scientific article published in September 2004

Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites

scientific article

Clade-specific diversification dynamics of marine diatoms since the Jurassic

article

Cloning, subcellular localization and expression of CHL1, a subunit of magnesium-chelatase in soybean.

scientific article published on October 1995

Comparative characterization of putative chitin deacetylases from Phaeodactylum tricornutum and Thalassiosira pseudonana highlights the potential for distinct chitin-based metabolic processes in diatoms

scientific article published on 15 November 2018

Comparative ecophysiology and genomics of the toxic unicellular alga Fibrocapsa japonica

scientific article published on 13 November 2009

Comparative genomics of the pennate diatom Phaeodactylum tricornutum

scientific article

Computational eco-systems biology in Tara Oceans: translating data into knowledge

scientific article

Contribution of genome‐scale metabolic modelling to niche theory

scientific article published on 06 April 2022

Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton

scientific article

Cyclic GMP and calcium mediate phytochrome phototransduction

scientific article published on 01 April 1994

DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis

scientific article published on 07 September 2018

DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis

DNA DAMAGE BINDING PROTEIN 2 (DDB2) Shapes the DNA Methylation Landscape

scientific article published on 16 August 2016

Decoding algal genomes: tracing back the history of photosynthetic life on Earth

scientific article published on April 2011

Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

scientific article

Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean.

scientific article published on 3 March 2016

Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity

scientific article published on 08 May 2009

Diatom cell division in an environmental context

scientific article published on 20 October 2010

Diatomics: toward diatom functional genomics

scientific article

Diatoms Are Selective Segregators in Global Ocean Planktonic Communities

scientific article published on 21 January 2020

Differential cellular responses associated with oxidative stress and cell fate decision under nitrate and phosphate limitations in Thalassiosira pseudonana: Comparative proteomics

scientific article

Differential regulation of superoxide dismutases in plants exposed to environmental stress

scientific article published in August 1991

Digital expression profiling of novel diatom transcripts provides insight into their biological functions

scientific article

Downregulation of mitochondrial alternative oxidase affects chloroplast function, redox status and stress response in a marine diatom

scientific article published on 22 November 2018

Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean

scientific article published in 2023

Elucidation of phytochrome signal-transduction mechanisms

scientific article published on 01 January 1994

Emerging themes of plant signal transduction

scientific article published on November 1994

Endocytosis-mediated siderophore uptake as a strategy for Fe acquisition in diatoms.

scientific article published on 16 May 2018

Energetic coupling between plastids and mitochondria drives CO2 assimilation in diatoms

scientific article

Engineered chlorophyll catabolism conferring predator resistance for microalgal biomass production

scientific article published in 2021

Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms

scientific article published on 8 September 2011

Evolution and metabolic significance of the urea cycle in photosynthetic diatoms

scientific article

Evolution of galactoglycerolipid biosynthetic pathways--from cyanobacteria to primary plastids and from primary to secondary plastids

scientific article published on 02 March 2014

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.

scientific article published on 16 January 2017

Evolutionary origins and functions of the carotenoid biosynthetic pathway in marine diatoms

scientific article (publication date: 6 August 2008)

Exploring Bioinorganic Pattern Formation in Diatoms. A Story of Polarized Trafficking ⬇️

scientific article published on December 1, 2001

Expression of ricin B chain in Escherichia coli

scientific article published on 01 February 1989

Extreme Diversity of Diplonemid Eukaryotes in the Ocean

scientific article

Fruit-specific RNAi-mediated suppression of DET1 enhances carotenoid and flavonoid content in tomatoes

scientific article published on 12 June 2005

Full-field interferometry for counting and differentiating aquatic biotic nanoparticles: from laboratory to Tara Oceans

scientific article published on 29 August 2016

Functional characterization of the diatom cyclin-dependent kinase A2 as a mitotic regulator reveals plant-like properties in a non-green lineage

scientific article

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

scientific article published in 2022

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

scientific article published on 01 November 2019

Gene silencing in the marine diatom Phaeodactylum tricornutum

scientific article (publication date: 31 May 2009)

Genetic and phenotypic characterization ofPhaeodactylum tricornutum(Bacillariophyceae) accessions1

scientific article (publication date: October 2007)

Genetic tool development in marine protists: emerging model organisms for experimental cell biology

scientific article published on 06 April 2020

Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features

scientific article

Genome properties of the diatom Phaeodactylum tricornutum

scientific article

Genome-wide analysis of the diatom cell cycle unveils a novel type of cyclins involved in environmental signaling

scientific article

Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis

scientific article

Genomic footprints of a cryptic plastid endosymbiosis in diatoms

scientific article

Genomic insights into photosynthesis in eukaryotic phytoplankton

scientific article published on 26 August 2010

Global drivers of eukaryotic plankton biogeography in the sunlit ocean

scientific article published in 2021

Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis

scientific article published in 2023

Histone H2B monoubiquitination facilitates the rapid modulation of gene expression during Arabidopsis photomorphogenesis

scientific article

Histone extraction protocol from the two model diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana

scientific article published on 4 December 2013

Homoeolog expression bias in allopolyploid oleaginous marine diatom Fistulifera solaris.

scientific article published on 4 May 2018

IDENTIFICATION AND COMPARATIVE GENOMIC ANALYSIS OF SIGNALING AND REGULATORY COMPONENTS IN THE DIATOMTHALASSIOSIRA PSEUDONANA

article

Insights into global diatom distribution and diversity in the world's ocean

scientific article

Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum

scientific article published in January 2013

Integrative analysis of large scale transcriptome data draws a comprehensive functional landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms

Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms.

scientific article published on 19 March 2018

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

scientific article

Integrative transcript and metabolite analysis of nutritionally enhanced DE-ETIOLATED1 downregulated tomato fruit

scientific article published on 30 April 2010

Iron utilization in marine cyanobacteria and eukaryotic algae

scientific article published on 7 March 2012

Leveraging metabolomics for functional investigations in sequenced marine diatoms

scientific article published on 30 March 2012

Light signaling controls nuclear architecture reorganization during seedling establishment.

scientific article published on 11 May 2015

Localization of putative carbonic anhydrases in two marine diatoms, Phaeodactylum tricornutum and Thalassiosira pseudonana

scientific article published on 2 March 2011

Manipulation of DET1 expression in tomato results in photomorphogenic phenotypes caused by post-transcriptional gene silencing

scientific article published on November 2004

Manipulation of light signal transduction as a means of modifying fruit nutritional quality in tomato

scholarly article

Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards

scientific article

Membrane glycerolipid remodeling triggered by nitrogen and phosphorus starvation in Phaeodactylum tricornutum

scientific article

Methylcrotonyl-CoA Carboxylase Regulates Triacylglycerol Accumulation in the Model Diatom Phaeodactylum tricornutum

scientific article

Microbial oceanography in a sea of opportunity

scientific article

Mitosis in diatoms: rediscovering an old model for cell division

scientific article published on August 2009

Modelling plankton ecosystems in the meta-omics era. Are we ready?

scientific article

Molecular cloning and characterization of a cDNA encoding asparagine synthetase from soybean (Glycine max L.) cell cultures

scientific article published in January 1998

Molecular cloning and characterization of a cDNA encoding early light-inducible protein from soybean (Glycine max L.).

scientific article published in December 1997

Molecular insights into the novel aspects of diatom biology.

scientific article

Molecular toolbox for studying diatom biology in Phaeodactylum tricornutum

article

Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export

scientific article published on 5 March 2018

Neobodonids are dominant kinetoplastids in the global ocean

scientific article published on 21 December 2017

Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom

scientific article

Noncoding and coding transcriptome responses of a marine diatom to phosphate fluctuations

scientific article published on 17 December 2015

Ocean plankton. Determinants of community structure in the global plankton interactome

scientific article published on May 2015

Ocean plankton. Environmental characteristics of Agulhas rings affect interocean plankton transport

scientific article

Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean

scientific article published on May 2015

Ocean plankton. Patterns and ecological drivers of ocean viral communities

scientific article published on May 2015

Ocean plankton. Structure and function of the global ocean microbiome

scientific article published on May 2015

Oceanographic and Biogeochemical Insights from Diatom Genomes ⬇️

scientific article published on January 1, 2010

Oil accumulation by the oleaginous diatom Fistulifera solaris as revealed by the genome and transcriptome

scientific article

Ostreococcus tauri is a new model green alga for studying iron metabolism in eukaryotic phytoplankton

scientific article

Overexpressing Tagged Proteins in Plants Using a Modified Gateway Cloning Strategy

scientific article published in March 2010

Perception of Environmental Signals by a Marine Diatom

scientific article published on 01 June 2000

Phenotype of the tomato high pigment-2 mutant is caused by a mutation in the tomato homolog of DEETIOLATED1.

scientific article published in February 1999

Photomorphogenesis, B-Box transcription factors, and the legacy of Magnus Holm

scientific article published in April 2013

Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes

scientific article published on 01 January 2021

Physiological and molecular evidence that environmental changes elicit morphological interconversion in the model diatom Phaeodactylum tricornutum.

scientific article published on 20 May 2011

PhytoCRISP-Ex: a web-based and stand-alone application to find specific target sequences for CRISPR/CAS editing

scientific article published on July 2016

Phytochrome signal transduction pathways are regulated by reciprocal control mechanisms

scientific article published in September 1994

Phytochrome-regulated repression of gene expression requires calcium and cGMP.

scientific article

Plankton networks driving carbon export in the oligotrophic ocean

scientific article

Plastic responses lead to increased neurotoxin production in the diatom <i>Pseudo-nitzschia</i> under ocean warming and acidification

scientific article published in 2023

Plastid Transcript Editing across Dinoflagellate Lineages Shows Lineage-Specific Application but Conserved Trends

scientific article published in April 2018

Potential impact of stress activated retrotransposons on genome evolution in a marine diatom

scientific article

Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes

scientific article published on 14 March 2019

Priorities for ocean microbiome research

scientific article published on 30 June 2022

Progressive and Biased Divergent Evolution Underpins the Origin and Diversification of Peridinin Dinoflagellate Plastids.

scientific article published on 4 November 2016

Prospects in diatom research

scientific article

Protocol: Chromatin immunoprecipitation (ChIP) methodology to investigate histone modifications in two model diatom species

scientific article published on 7 December 2012

Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology

scientific article published on 15 April 2020

Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes

scientific article published on 31 October 2017

Re-print of "Histone extraction protocol from the two model diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana"

scientific article published on 22 May 2014

Recent progress in diatom genomics and epigenomics

scientific article published on 19 February 2017

Revealing the molecular secrets of marine diatoms

scientific article

Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages

scientific article

Semi-quantitative RT-PCR analysis of photoregulated gene expression in marine diatoms

scientific article published in August 1999

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

scientific article published on 22 January 2018

Spectro-temporal characterization of the photoactivation mechanism of two new oxidized cryptochrome/photolyase photoreceptors

scientific article published in April 2010

Spectroscopic characterization of a (6-4) photolyase from the green alga Ostreococcus tauri.

scientific article published on 14 April 2009

Stemming epigenetics in marine stramenopiles

scientific article (publication date: August 2011)

Superoxide dismutase enhances tolerance of freezing stress in transgenic alfalfa (Medicago sativa L.).

scientific article published in December 1993

Tara Oceans studies plankton at planetary scale

scientific article

Tara Oceans: towards global ocean ecosystems biology

scientific article published on 12 May 2020

The Chlamydomonas genome reveals the evolution of key animal and plant functions

scientific article

The Diatom EST Database

scientific article

The Ectocarpus Genome and Brown Algal Genomics

article published in 2012

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

scientific article

The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism

scientific article

The INO80 Protein Controls Homologous Recombination in Arabidopsis thaliana

scientific article published in November 2004

The Implications of Eco-Evolutionary Processes for the Emergence of Marine Plankton Community Biogeography

scientific article published on 8 May 2017

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

scientific article

The Photomorphogenesis Regulator DET1 Binds the Amino-Terminal Tail of Histone H2B in a Nucleosome Context

scientific article published in September 2002

The SlCBL10 calcineurin B-like protein ensures plant growth under salt stress by regulating Na+ and Ca2+ homeostasis

scientific article published on 11 December 2017

The Tara Pacific expedition-A pan-ecosystemic approach of the "-omics" complexity of coral reef holobionts across the Pacific Ocean

scientific article published on 23 September 2019

The conserved factor DE-ETIOLATED 1 cooperates with CUL4-DDB1DDB2 to maintain genome integrity upon UV stress

scientific article published on 8 February 2011

The epibiotic life of the cosmopolitan diatom Fragilariopsis doliolus on heterotrophic ciliates in the open ocean

scientific article

The evolution and function of blue and red light photoreceptors

scientific article

The evolution of diatoms and their biogeochemical functions

scientific article

The molecular life of diatoms

scientific article published on 12 July 2014

The role of calcium in oligogalacturonide-activated signalling in soybean cells

scientific article published on 24 April 2002

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

scientific article

Transcription factor families inferred from genome sequences of photosynthetic stramenopiles

scientific article published on 14 July 2010

Transcriptome profiling of sorted endoreduplicated nuclei from tomato fruits: how the global shift in expression ascribed to DNA ploidy influences RNA-Seq data normalization and interpretation.

scientific article published on 24 November 2017

Transformation of Nonselectable Reporter Genes in Marine Diatoms

article

Tryptophan biosynthesis in stramenopiles: eukaryotic winners in the diatom complex chloroplast

scientific article published on 16 October 2007

Tuning in to the signals controlling photoregulated gene expression in plants ⬇️

scientific article published on October 1, 1997

Ubiquitous abundance distribution of non-dominant plankton across the global ocean

scientific article published on 18 June 2018

Ubiquitous abundance distribution of non-dominant plankton across the world's ocean

Ultrastructure and Membrane Traffic During Cell Division in the Marine Pennate Diatom Phaeodactylum tricornutum

scientific article

Update of the Diatom EST Database: a new tool for digital transcriptomics

scientific article

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

scientific article

Water: the invisible problem. Access to fresh water is considered to be a universal and free human right, but dwindling resources and a burgeoning population are increasing its economic value

scientific article (publication date: July 2009)

When everything is not everywhere but species evolve: an alternative method to model adaptive properties of marine ecosystems

scientific article

Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation

scholarly article

Whole-genome scanning reveals environmental selection mechanisms that shape diversity in populations of the epipelagic diatom Chaetoceros

scientific article published in 2022

det1-1-induced UV-C hyposensitivity through UVR3 and PHR1 photolyase gene over-expression

scientific article published on 6 May 2010

iTRAQ-based proteomic analysis of the metabolism mechanism associated with silicon response in the marine diatom Thalassiosira pseudonana

scientific article published on 8 January 2014

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