List of works - Tapio Pahikkala

A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines

scientific article published on 3 October 2017

A Comparative Study of Pairwise Learning Methods Based on Kernel Ridge Regression

scientific article published on 12 June 2018

A Comparison of Embedding Aggregation Strategies in Drug-Target Interaction Prediction

scientific article published on 25 September 2023

A Low-Overhead, Fully-Distributed, Guaranteed-Delivery Routing Algorithm for Faulty Network-on-Chips

scientific article published in 2015

A Two-Step Learning Approach for Solving Full and Almost Full Cold Start Problems in Dyadic Prediction

article by Tapio Pahikkala et al published 2014 in Lecture Notes in Computer Science

Algebraic shortcuts for leave-one-out cross-validation in supervised network inference

scientific article published on 16 October 2018

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning

scientific article

An efficient algorithm for learning to rank from preference graphs

An experimental comparison of cross-validation techniques for estimating the area under the ROC curve

article

Analysis of Link Grammar on Biomedical Dependency Corpus Targeted at Protein-Protein Interactions ⬇️

scientific article published in 2004

Assessment of metal ion concentration in water with structured feature selection.

scientific article

Circulating Cytokines Predict the Development of Insulin Resistance in a Prospective Finnish Population Cohort

scientific article published on 30 June 2016

Comparison of automatic summarisation methods for clinical free text notes

scientific article published on 21 January 2016

Computational-experimental approach to drug-target interaction mapping: A case study on kinase inhibitors.

scientific article published on 07 August 2017

Computer-assisted identification of multitrace electrophoretic patterns in differential display experiments

scientific article published in March 2007

Conditional Ranking on Relational Data

Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation

scientific article

Cost-effective survival prediction for patients with advanced prostate cancer using clinical trial and real-world hospital registry datasets

scientific article published on 17 November 2019

Developing a pain intensity prediction model using facial expression: A feasibility study with electromyography

scientific article published on 09 July 2020

Diffusion-weighted imaging of prostate cancer: effect of b-value distribution on repeatability and cancer characterization

scientific article published on 26 July 2015

Efficient regularized least-squares algorithms for conditional ranking on relational data

article by Tapio Pahikkala et al published 7 June 2013 in Machine Learning

Evaluation of machine learning algorithms for improved risk assessment for Down's syndrome

scientific article published on 04 May 2018

Evaluation of two dependency parsers on biomedical corpus targeted at protein-protein interactions.

scientific article published on 11 August 2005

Fast Kronecker Product Kernel Methods via Generalized Vec Trick

scientific article published on August 2017

Fitting methods for intravoxel incoherent motion imaging of prostate cancer on region of interest level: Repeatability and gleason score prediction.

scientific article published on 28 February 2016

GeFeS: A generalized wrapper feature selection approach for optimizing classification performance

scientific article published on 20 August 2020

Genetic variants and their interactions in disease risk prediction - machine learning and network perspectives

scientific article published on March 2013

High Performance Pattern Matching on Heterogeneous Platform

scientific article published in December 2014

High performance pattern matching on heterogeneous platform

scientific article

IMPROD biparametric MRI in men with a clinical suspicion of prostate cancer (IMPROD Trial): Sensitivity for prostate cancer detection in correlation with whole-mount prostatectomy sections and implications for focal therapy

scientific article published on 22 March 2019

Identification of Functionally Related Enzymes by Learning-to-Rank Methods

scientific article published on November 2014

Inspiratory flow shape clustering: an automated method to monitor upper airway performance during sleep

scientific article published on 3 November 2006

Learning Valued Relations from Data

Learning intransitive reciprocal relations with kernel methods

Learning with multiple pairwise kernels for drug bioactivity prediction.

scientific article published in July 2018

Leveraging multi-way interactions for systematic prediction of pre-clinical drug combination effects

scientific article published on 01 December 2020

Luminometric Label Array for Counting and Differentiation of Bacteria.

scientific article published on 9 February 2017

Luminometric Label Array for Quantification and Identification of Metal Ions

scientific article published on 05 May 2016

Mathematical models for diffusion-weighted imaging of prostate cancer using b values up to 2000 s/mm(2) : correlation with Gleason score and repeatability of region of interest analysis

scientific article published on 20 October 2014

Molecular Atlas of Postnatal Mouse Heart Development

article

Negative Predictive Value of Biparametric Prostate Magnetic Resonance Imaging in Excluding Significant Prostate Cancer: A Pooled Data Analysis Based on Clinical Data from Four Prospective, Registered Studies

scientific article published on 14 May 2020

Optimized reference spectrum for rating the façade sound insulation

scientific article published on 01 November 2020

Parallel Feature Selection for Regularized Least-Squares

article by Sebastian Okser et al published 2013 in Lecture Notes in Computer Science

Prebiopsy IMPROD Biparametric Magnetic Resonance Imaging Combined with Prostate-Specific Antigen Density in the Diagnosis of Prostate Cancer: An External Validation Study

scientific article published on 06 September 2019

Predicting patient acuity from electronic patient records

scientific article published on 12 April 2014

Prediction of biochemical recurrence in prostate cancer patients who underwent prostatectomy using routine clinical prostate multiparametric MRI and decipher genomic score

scientific article published on 30 September 2019

Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open clinical trial data

scientific article

Prediction of prostate cancer aggressiveness using 18F-Fluciclovine (FACBC) PET and multisequence multiparametric MRI

scientific article published on 10 June 2020

Prostate Cancer Risk Stratification in Men With a Clinical Suspicion of Prostate Cancer Using a Unique Biparametric MRI and Expression of 11 Genes in Apparently Benign Tissue: Evaluation Using Machine-Learning Techniques

scientific article published on 06 October 2019

Qualitative and Quantitative Reporting of a Unique Biparametric MRI: Towards Biparametric MRI-Based Nomograms for Prediction of Prostate Biopsy Outcome in Men With a Clinical Suspicion of Prostate Cancer (IMPROD and MULTI-IMPROD Trials)

scientific article published on 21 November 2019

Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization

scientific article published on 08 July 2019

Regularized Machine Learning in the Genetic Prediction of Complex Traits

scientific article (publication date: 13 November 2014)

Skin Conductance Response to Gradual-Increasing Experimental Pain

scientific article published on 01 July 2019

Switching maintenance infliximab therapy to biosimilar infliximab in inflammatory bowel disease patients

scientific article published on 24 August 2017

Synthetic minority oversampling of vital statistics data with generative adversarial networks

scientific article published on 04 September 2020

Time-Gated Raman Spectroscopy for Quantitative Determination of Solid-State Forms of Fluorescent Pharmaceuticals

scientific article published on 19 March 2018

Tournament leave-pair-out cross-validation for receiver operating characteristic analysis

scientific article published on 20 August 2018

Toward more realistic drug-target interaction predictions

scientific article published on 9 April 2014

Towards automated classification of intensive care nursing narratives

scientific article published on 01 January 2006

Towards automated classification of intensive care nursing narratives.

scientific article

Wrapper-based selection of genetic features in genome-wide association studies through fast matrix operations

scientific article

List of works by Tapio Pahikkala

A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines

A Comparative Study of Pairwise Learning Methods Based on Kernel Ridge Regression

A Comparison of Embedding Aggregation Strategies in Drug-Target Interaction Prediction

A Low-Overhead, Fully-Distributed, Guaranteed-Delivery Routing Algorithm for Faulty Network-on-Chips

A Two-Step Learning Approach for Solving Full and Almost Full Cold Start Problems in Dyadic Prediction

Algebraic shortcuts for leave-one-out cross-validation in supervised network inference

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning

An efficient algorithm for learning to rank from preference graphs

An experimental comparison of cross-validation techniques for estimating the area under the ROC curve

Analysis of Link Grammar on Biomedical Dependency Corpus Targeted at Protein-Protein Interactions ⬇️

Assessment of metal ion concentration in water with structured feature selection.

Circulating Cytokines Predict the Development of Insulin Resistance in a Prospective Finnish Population Cohort

Comparison of automatic summarisation methods for clinical free text notes

Computational-experimental approach to drug-target interaction mapping: A case study on kinase inhibitors.

Computer-assisted identification of multitrace electrophoretic patterns in differential display experiments

Conditional Ranking on Relational Data

Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation

Cost-effective survival prediction for patients with advanced prostate cancer using clinical trial and real-world hospital registry datasets

Developing a pain intensity prediction model using facial expression: A feasibility study with electromyography

Diffusion-weighted imaging of prostate cancer: effect of b-value distribution on repeatability and cancer characterization

Efficient regularized least-squares algorithms for conditional ranking on relational data

Evaluation of machine learning algorithms for improved risk assessment for Down's syndrome

Evaluation of two dependency parsers on biomedical corpus targeted at protein-protein interactions.

Fast Kronecker Product Kernel Methods via Generalized Vec Trick

Fitting methods for intravoxel incoherent motion imaging of prostate cancer on region of interest level: Repeatability and gleason score prediction.

GeFeS: A generalized wrapper feature selection approach for optimizing classification performance

Genetic variants and their interactions in disease risk prediction - machine learning and network perspectives

High Performance Pattern Matching on Heterogeneous Platform

High performance pattern matching on heterogeneous platform

IMPROD biparametric MRI in men with a clinical suspicion of prostate cancer (IMPROD Trial): Sensitivity for prostate cancer detection in correlation with whole-mount prostatectomy sections and implications for focal therapy

Identification of Functionally Related Enzymes by Learning-to-Rank Methods

Inspiratory flow shape clustering: an automated method to monitor upper airway performance during sleep

Learning Valued Relations from Data

Learning intransitive reciprocal relations with kernel methods

Learning with multiple pairwise kernels for drug bioactivity prediction.

Leveraging multi-way interactions for systematic prediction of pre-clinical drug combination effects

Luminometric Label Array for Counting and Differentiation of Bacteria.

Luminometric Label Array for Quantification and Identification of Metal Ions

Mathematical models for diffusion-weighted imaging of prostate cancer using b values up to 2000 s/mm(2) : correlation with Gleason score and repeatability of region of interest analysis

Molecular Atlas of Postnatal Mouse Heart Development

Negative Predictive Value of Biparametric Prostate Magnetic Resonance Imaging in Excluding Significant Prostate Cancer: A Pooled Data Analysis Based on Clinical Data from Four Prospective, Registered Studies

Optimized reference spectrum for rating the façade sound insulation

Parallel Feature Selection for Regularized Least-Squares

Prebiopsy IMPROD Biparametric Magnetic Resonance Imaging Combined with Prostate-Specific Antigen Density in the Diagnosis of Prostate Cancer: An External Validation Study

Predicting patient acuity from electronic patient records

Prediction of biochemical recurrence in prostate cancer patients who underwent prostatectomy using routine clinical prostate multiparametric MRI and decipher genomic score

Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open clinical trial data

Prediction of prostate cancer aggressiveness using 18F-Fluciclovine (FACBC) PET and multisequence multiparametric MRI

Prostate Cancer Risk Stratification in Men With a Clinical Suspicion of Prostate Cancer Using a Unique Biparametric MRI and Expression of 11 Genes in Apparently Benign Tissue: Evaluation Using Machine-Learning Techniques

Qualitative and Quantitative Reporting of a Unique Biparametric MRI: Towards Biparametric MRI-Based Nomograms for Prediction of Prostate Biopsy Outcome in Men With a Clinical Suspicion of Prostate Cancer (IMPROD and MULTI-IMPROD Trials)

Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization

Regularized Machine Learning in the Genetic Prediction of Complex Traits

Skin Conductance Response to Gradual-Increasing Experimental Pain

Switching maintenance infliximab therapy to biosimilar infliximab in inflammatory bowel disease patients

Synthetic minority oversampling of vital statistics data with generative adversarial networks

Time-Gated Raman Spectroscopy for Quantitative Determination of Solid-State Forms of Fluorescent Pharmaceuticals

Tournament leave-pair-out cross-validation for receiver operating characteristic analysis

Toward more realistic drug-target interaction predictions

Towards automated classification of intensive care nursing narratives

Towards automated classification of intensive care nursing narratives.

Wrapper-based selection of genetic features in genome-wide association studies through fast matrix operations