List of works - Simon Moxon

A Database of microRNA Expression Patterns in Xenopus laevis

scientific article published on 27 October 2015

A non-canonical RNA silencing pathway promotes mRNA degradation in basal Fungi

scientific article

A scoring matrix approach to detecting miRNA target sites

scientific article published on 31 March 2008

A single argonaute gene participates in exogenous and endogenous RNAi and controls cellular functions in the basal fungus Mucor circinelloides

scientific article

A toolkit for analysing large-scale plant small RNA datasets

scientific article

Ago2-Dependent Processing Allows miR-451 to Evade the Global MicroRNA Turnover Elicited during Erythropoiesis

scientific article published on 12 March 2020

An Assessment of the Next Generation of Animal miRNA Target Prediction Algorithms

scientific article

An Improved microRNA Annotation of the Canine Genome

scientific article (publication date: 2016)

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species ⬇️

scientific article (publication date: 16 May 2012)

Characterisation and expression of microRNAs in developing wings of the neotropical butterfly Heliconius melpomene

scientific article

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

scientific article

DSYB catalyses the key step of dimethylsulfoniopropionate biosynthesis in many phytoplankton

scientific article published on 26 February 2018

Deciphering the diversity of small RNAs in plants: the long and short of it.

scientific article

Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine

scientific article published on 26 September 2010

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

scientific article

Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interaction

scientific article

Distinct Effects of p19 RNA Silencing Suppressor on Small RNA Mediated Pathways in Plants.

scientific article

Divergence in Transcriptional and Regulatory Responses to Mating in Male and Female Fruitflies

scientific article published on 06 November 2019

Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides

scientific article published on 28 April 2010

Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

scientific article published on 4 April 2017

Genome-wide microRNA screening in Nile tilapia reveals pervasive isomiRs' transcription, sex-biased arm switching and increasing complexity of expression throughout development.

scientific article

Global discovery and characterization of small non-coding RNAs in marine microalgae

scientific article

Heterarchy of transcription factors driving basal and luminal cell phenotypes in human urothelium

scientific article

High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families

scientific article

Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis

scientific article

Identification of novel small RNAs in tomato (Solanum lycopersicum).

scientific article published on 6 April 2007

Mechanistic insights into non-coding Y RNA processing

scientific article published on 31 December 2021

Metatranscriptomes from diverse microbial communities: assessment of data reduction techniques for rigorous annotation

scientific article

MicroRNA-10 modulates Hox genes expression during Nile tilapia embryonic development.

scientific article

MirPlex: a tool for identifying miRNAs in high-throughput sRNA datasets without a genome

scientific article published on 26 November 2012

PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing

scientific article published on 29 March 2012

Pfam: clans, web tools and services

scientific article

Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns

scientific article published on 9 May 2011

RNAcentral: A vision for an international database of RNA sequences

scientific article (publication date: November 2011)

Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

scientific article published on 13 February 2017

Rfam: annotating non-coding RNAs in complete genomes

scientific article

Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches ⬇️

scientific article published on January 1, 2011

Small-RNA Sequencing Reveals Altered Skeletal Muscle microRNAs and snoRNAs Signatures in Weanling Male Offspring from Mouse Dams Fed a Low Protein Diet during Lactation

scientific article published on 11 May 2021

Structural and functional analysis of viral siRNAs

scientific article

The Pfam protein families database

scientific article (publication date: 2004)

The RNAi machinery controls distinct responses to environmental signals in the basal fungus Mucor circinelloides.

scientific article published on 25 March 2015

The UEA sRNA Workbench (version 4.4): a comprehensive suite of tools for analyzing miRNAs and sRNAs

scientific article published on 01 October 2018

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets ⬇️

scientific article published on 24 May 2012

The cytoskeleton adaptor protein ankyrin-1 is upregulated by p53 following DNA damage and alters cell migration.

scientific article

The evolutionary dynamics of microRNAs in domestic mammals

scientific article published in Scientific Reports

The positive transcriptional elongation factor (P-TEFb) is required for neural crest specification

scientific article published on 22 June 2016

miR-133-mediated regulation of the Hedgehog pathway orchestrates embryo myogenesis

scientific article published on 11 June 2018

miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets

scientific article published on 12 April 2017

microRNAs associated with early neural crest development in Xenopus laevis.

scientific article published on 18 January 2018

List of works by Simon Moxon

A Database of microRNA Expression Patterns in Xenopus laevis

A non-canonical RNA silencing pathway promotes mRNA degradation in basal Fungi

A scoring matrix approach to detecting miRNA target sites

A single argonaute gene participates in exogenous and endogenous RNAi and controls cellular functions in the basal fungus Mucor circinelloides

A toolkit for analysing large-scale plant small RNA datasets

Ago2-Dependent Processing Allows miR-451 to Evade the Global MicroRNA Turnover Elicited during Erythropoiesis

An Assessment of the Next Generation of Animal miRNA Target Prediction Algorithms

An Improved microRNA Annotation of the Canine Genome

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species ⬇️

Characterisation and expression of microRNAs in developing wings of the neotropical butterfly Heliconius melpomene

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

DSYB catalyses the key step of dimethylsulfoniopropionate biosynthesis in many phytoplankton

Deciphering the diversity of small RNAs in plants: the long and short of it.

Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interaction

Distinct Effects of p19 RNA Silencing Suppressor on Small RNA Mediated Pathways in Plants.

Divergence in Transcriptional and Regulatory Responses to Mating in Male and Female Fruitflies

Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides

Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

Genome-wide microRNA screening in Nile tilapia reveals pervasive isomiRs' transcription, sex-biased arm switching and increasing complexity of expression throughout development.

Global discovery and characterization of small non-coding RNAs in marine microalgae

Heterarchy of transcription factors driving basal and luminal cell phenotypes in human urothelium

High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families

Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis

Identification of novel small RNAs in tomato (Solanum lycopersicum).

Mechanistic insights into non-coding Y RNA processing

Metatranscriptomes from diverse microbial communities: assessment of data reduction techniques for rigorous annotation

MicroRNA-10 modulates Hox genes expression during Nile tilapia embryonic development.

MirPlex: a tool for identifying miRNAs in high-throughput sRNA datasets without a genome

PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing

Pfam: clans, web tools and services

Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns

RNAcentral: A vision for an international database of RNA sequences

Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

Rfam: annotating non-coding RNAs in complete genomes

Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches ⬇️

Small-RNA Sequencing Reveals Altered Skeletal Muscle microRNAs and snoRNAs Signatures in Weanling Male Offspring from Mouse Dams Fed a Low Protein Diet during Lactation

Structural and functional analysis of viral siRNAs

The Pfam protein families database

The RNAi machinery controls distinct responses to environmental signals in the basal fungus Mucor circinelloides.

The UEA sRNA Workbench (version 4.4): a comprehensive suite of tools for analyzing miRNAs and sRNAs

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets ⬇️

The cytoskeleton adaptor protein ankyrin-1 is upregulated by p53 following DNA damage and alters cell migration.

The evolutionary dynamics of microRNAs in domestic mammals

The positive transcriptional elongation factor (P-TEFb) is required for neural crest specification

miR-133-mediated regulation of the Hedgehog pathway orchestrates embryo myogenesis

miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets

microRNAs associated with early neural crest development in Xenopus laevis.