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List of works by Ian Sillitoe

3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

scientific article published in 2022

A rapid classification protocol for the CATH Domain Database to support structural genomics

scientific article published in January 2001

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

scientific article

An overview of comparative modelling and resources dedicated to large-scale modelling of genome sequences

scientific article published on 28 July 2017

Anatomy of BioJS, an open source community for the life sciences

scientific article

Assessing strategies for improved superfamily recognition

scientific article published on 3 June 2005

Assigning genomic sequences to CATH

scientific article published on January 2000

BioJS: an open source standard for biological visualisation - its status in 2014

scientific article

CATH FunFHMMer web server: protein functional annotations using functional family assignments

scientific article published on 11 May 2015

CATH-Gene3D: Generation of the Resource and Its Use in Obtaining Structural and Functional Annotations for Protein Sequences

scientific article

CATH: an expanded resource to predict protein function through structure and sequence

scientific article

CATH: comprehensive structural and functional annotations for genome sequences.

scientific article

Chainsaw: protein domain segmentation with fully convolutional neural networks

Exploring Enzyme Evolution from Changes in Sequence, Structure, and Function

scientific article published on 01 January 2019

Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies

scientific article

Extending CATH: increasing coverage of the protein structure universe and linking structure with function

scientific article

FLORA: a novel method to predict protein function from structure in diverse superfamilies

scientific article

FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies

scientific article

FunTree: advances in a resource for exploring and contextualising protein function evolution

scientific article

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation

scientific article

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation

scientific article published in 2016

Functional innovation from changes in protein domains and their combinations

scientific article published on 13 June 2016

Gene3D: Extensive prediction of globular domains in proteins

scientific article published on 3 November 2017

Gene3D: Extensive prediction of globular domains in proteins

scientific article published on 29 November 2017

Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis

scientific article

Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis

scientific article published in December 2011

Gene3D: expanding the utility of domain assignments

scientific article published on 17 November 2015

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains

scientific article

Genome3D: exploiting structure to help users understand their sequences

scientific article

InterPro in 2017-beyond protein family and domain annotations

scientific article

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

article by Alex Mitchell et al published 6 November 2018 in Nucleic Acids Research

MSAViewer: interactive JavaScript visualization of multiple sequence alignments

scientific article published on 13 July 2016

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures

scientific article

Recognizing the fold of a protein structure.

scientific article

SARS-CoV-2 spike protein predicted to form stable complexes with host receptor protein orthologues from mammals

scientific article published on 02 May 2020

The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis

scientific article

The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies

scientific article published on 7 November 2008

The CATH database: an extended protein family resource for structural and functional genomics

scientific article

The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution

scientific article

The CATH hierarchy revisited-structural divergence in domain superfamilies and the continuity of fold space

scientific article published on August 2009

The CATH protein family database: a resource for structural and functional annotation of genomes

scientific article

The Classification of Protein Domains

scientific article published on January 2017

The Gene3D Web Services: a platform for identifying, annotating and comparing structural domains in protein sequences

scientific article

The InterPro protein families database: the classification resource after 15 years

scientific article

The evolution of enzyme function in the isomerases

scientific article

The history of the CATH structural classification of protein domains

scientific article (publication date: December 2015)

Understanding enzyme function evolution from a computational perspective

scientific article published on 7 September 2017

Use of structure comparison methods for the refinement of protein structure predictions. I. Identifying the structural family of a protein from low-resolution models.

scientific article

Using CATH-Gene3D to Analyze the Sequence, Structure, and Function of Proteins.

scientific article

VarSite: Disease variants and protein structure

scientific article published on 27 October 2019

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