Search filters

List of works by Stefan Hoops

A new strategy for assessing sensitivities in biochemical models

scientific article

Agent-Based Modeling and High Performance Computing

Agents and networks to model the dynamic interactions of intracellular transport

scientific article

Bistability analyses of CD4+ T follicular helper and regulatory cells during Helicobacter pylori infection

scientific article

COPASI and its applications in biotechnology

scientific article published on 24 June 2017

Computational Modeling

article

Computational modeling of biochemical networks using COPASI

scientific article (publication date: 2009)

Computational modeling of heterogeneity and function of CD4+ T cells

scientific article

Condor-COPASI: high-throughput computing for biochemical networks

scientific article

Controlled vocabularies and semantics in systems biology

scientific article (publication date: 25 October 2011)

ENISI SDE: A New Web-Based Tool for Modeling Stochastic Processes

scientific article published in March 2015

ENISI multiscale modeling of mucosal immune responses driven by high performance computing

article

ENteric Immunity SImulator: a tool for in silico study of gastroenteric infections

scientific article published in September 2012

Enzyme kinetics and computational modeling for systems biology.

scientific article published in January 2009

Epihiper-A high performance computational modeling framework to support epidemic science

scientific article published in January 2025

High-resolution computational modeling of immune responses in the gut.

scientific article published in June 2019

Hybrid modeling and simulation of stochastic effects on progression through the eukaryotic cell cycle

scientific article published on January 2012

Immunoinformatics Cyberinfrastructure for Modeling and Analytics

JigCell Run Manager (JC-RM): a tool for managing large sets of biochemical model parametrizations

scientific article published on 24 December 2015

Minimum Information About a Simulation Experiment (MIASE)

scientific article

Modeling Exercises

Modeling the Mechanisms by Which HIV-Associated Immunosuppression Influences HPV Persistence at the Oral Mucosa

scientific article

Modeling the Regulatory Mechanisms by Which NLRX1 Modulates Innate Immune Responses to Helicobacter pylori Infection

scientific article

Modeling the Role of Peroxisome Proliferator-Activated Receptor γ and MicroRNA-146 in Mucosal Immune Responses to Clostridium difficile ⬇️

scientific article published on October 11, 2012

Multiscale Modeling

Multiscale modeling of mucosal immune responses

scientific article published on 25 August 2015

Ordinary Differential Equations (ODEs) Based Modeling

Predictive computational modeling of the mucosal immune responses during Helicobacter pylori infection

scientific article

Role of heterogeneity: National scale data-driven agent-based modeling for the US COVID-19 Scenario Modeling Hub

scientific article published in September 2024

SBML Level 3 Package Proposal: Annotation

SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3

article

SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3.

scientific article

SBML Level 3: an extensible format for the exchange and reuse of biological models

scientific article published on 01 August 2020

Sensitivity Analysis of an ENteric Immunity SImulator (ENISI)-Based Model of Immune Responses to Helicobacter pylori Infection

scientific article published on September 2015

Supervised Learning with the Artificial Neural Networks Algorithm for Modeling Immune Cell Differentiation

scholarly article published 2015

Supervised learning methods in modeling of CD4+ T cell heterogeneity

scientific article published on 4 September 2015

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

scientific article

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

Systems Biology Markup Language (SBML) Level 2: Structures and Facilities for Model Definitions

Systems Modeling of Interactions between Mucosal Immunity and the Gut Microbiome during Clostridium difficile Infection

scientific article published on 31 July 2015

Systems modeling of molecular mechanisms controlling cytokine-driven CD4+ T cell differentiation and phenotype plasticity

scientific article

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

scientific article

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2

scientific article published on 20 June 2019

Paulina is supported by:

About Paulina

Help