List of works - Weizhong Li

A fast clustering algorithm for analyzing highly similar compounds of very large libraries

scientific article

A residue in the S2 subsite controls substrate selectivity of matrix metalloproteinase-2 and matrix metalloproteinase-9.

scientific article published on 18 February 2003

A segment alignment approach to protein comparison.

scientific article

A unique substrate binding mode discriminates membrane type-1 matrix metalloproteinase from other matrix metalloproteinases

scientific article published on 16 April 2002

A unique substrate recognition profile for matrix metalloproteinase-2.

scientific article

Alterations in the porcine colon microbiota induced by the gastrointestinal nematode Trichuris suis

scientific article

Alternative splicing regulated by butyrate in bovine epithelial cells

scientific article

Analysis and comparison of very large metagenomes with fast clustering and functional annotation

scientific article

Artificial and natural duplicates in pyrosequencing reads of metagenomic data

scientific article

CD-HIT Suite: a web server for clustering and comparing biological sequences

scientific article

CD-HIT-OTU-MiSeq, an Improved Approach for Clustering and Analyzing Paired End MiSeq 16S rRNA Sequences

CD-HIT: accelerated for clustering the next-generation sequencing data

scientific article (publication date: December 2012)

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

scientific article (publication date: July 2006)

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

scientific article

Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities

scientific article

Expansion of the protein repertoire in newly explored environments: human gut microbiome specific protein families

scientific article

FFAS03: a server for profile--profile sequence alignments

scientific article

FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes ⬇️

scientific article

Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering

scientific article

Genomic signatures of mitonuclear coevolution across populations of Tigriopus californicus

scientific article published on 09 July 2018

Identification of ribosomal RNA genes in metagenomic fragments

scientific article published on 3 April 2009

Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of antimicrobial resistance in infants

scientific article published on 23 July 2019

In search for more accurate alignments in the twilight zone

scientific article

Interplay between the human gut microbiome and host metabolism

scientific article published on 03 October 2019

Library preparation methodology can influence genomic and functional predictions in human microbiome research

scientific article published on 28 October 2015

Metagenomic insights into the RDX-degrading potential of the ovine rumen microbiome

scientific article

Microbial Species that Initially Colonize the Human Gut at Birth or in Early Childhood Can Stay in Human Body for Lifetime

scientific article published on 07 January 2021

Occurrence of phosphate acquisition genes in Prochlorococcus cells from different ocean regions

scientific article published on 2 February 2009

Perturbation Dynamics of the Rumen Microbiota in Response to Exogenous Butyrate ⬇️

scientific article published on January 12, 2012

Probing metagenomics by rapid cluster analysis of very large datasets

scientific article

Splice variants and regulatory networks associated with host resistance to the intestinal worm Cooperia oncophora in cattle

scientific article

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

scientific article published in March 2007

The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome

scientific article published on 8 February 2016

Transcriptome Characterization by RNA-seq Unravels the Mechanisms of Butyrate-Induced Epigenomic Regulation in Bovine Cells ⬇️

scientific article published on May 15, 2012

Transcriptomic Sequencing Reveals a Set of Unique Genes Activated by Butyrate-Induced Histone Modification

scientific article published on 21 January 2016

Ultrafast clustering algorithms for metagenomic sequence analysis

scientific article

VISSA: a program to visualize structural features from structure sequence alignment

scientific article published on 24 January 2006

Web-based bioinformatics workflows for end-to-end RNA-seq data computation and analysis in agricultural animal species

scientific article

WebMGA: a customizable web server for fast metagenomic sequence analysis ⬇️

scientific article published on September 7, 2011

Worm burden-dependent disruption of the porcine colon microbiota by Trichuris suis infection

scientific article

List of works by Weizhong Li

A fast clustering algorithm for analyzing highly similar compounds of very large libraries

A residue in the S2 subsite controls substrate selectivity of matrix metalloproteinase-2 and matrix metalloproteinase-9.

A segment alignment approach to protein comparison.

A unique substrate binding mode discriminates membrane type-1 matrix metalloproteinase from other matrix metalloproteinases

A unique substrate recognition profile for matrix metalloproteinase-2.

Alterations in the porcine colon microbiota induced by the gastrointestinal nematode Trichuris suis

Alternative splicing regulated by butyrate in bovine epithelial cells

Analysis and comparison of very large metagenomes with fast clustering and functional annotation

Artificial and natural duplicates in pyrosequencing reads of metagenomic data

CD-HIT Suite: a web server for clustering and comparing biological sequences

CD-HIT-OTU-MiSeq, an Improved Approach for Clustering and Analyzing Paired End MiSeq 16S rRNA Sequences

CD-HIT: accelerated for clustering the next-generation sequencing data

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities

Expansion of the protein repertoire in newly explored environments: human gut microbiome specific protein families

FFAS03: a server for profile--profile sequence alignments

FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes ⬇️

Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering

Genomic signatures of mitonuclear coevolution across populations of Tigriopus californicus

Identification of ribosomal RNA genes in metagenomic fragments

Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of antimicrobial resistance in infants

In search for more accurate alignments in the twilight zone

Interplay between the human gut microbiome and host metabolism

Library preparation methodology can influence genomic and functional predictions in human microbiome research

Metagenomic insights into the RDX-degrading potential of the ovine rumen microbiome

Microbial Species that Initially Colonize the Human Gut at Birth or in Early Childhood Can Stay in Human Body for Lifetime

Occurrence of phosphate acquisition genes in Prochlorococcus cells from different ocean regions

Perturbation Dynamics of the Rumen Microbiota in Response to Exogenous Butyrate ⬇️

Probing metagenomics by rapid cluster analysis of very large datasets

Splice variants and regulatory networks associated with host resistance to the intestinal worm Cooperia oncophora in cattle

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome

Transcriptome Characterization by RNA-seq Unravels the Mechanisms of Butyrate-Induced Epigenomic Regulation in Bovine Cells ⬇️

Transcriptomic Sequencing Reveals a Set of Unique Genes Activated by Butyrate-Induced Histone Modification

Ultrafast clustering algorithms for metagenomic sequence analysis

VISSA: a program to visualize structural features from structure sequence alignment

Web-based bioinformatics workflows for end-to-end RNA-seq data computation and analysis in agricultural animal species

WebMGA: a customizable web server for fast metagenomic sequence analysis ⬇️

Worm burden-dependent disruption of the porcine colon microbiota by Trichuris suis infection