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List of works by Marcellus Ubbink

1H, 13C and 15N resonance assignment of Cu(I)-pseudoazurin from Alcaligenes faecalis S-6.

scientific article published in August 2004

A Double-Armed, Hydrophilic Transition Metal Complex as a Paramagnetic NMR Probe

scientific article published on 13 August 2019

A Focal Adhesion Kinase-Derived Peptide Binds the Src SH3 Domain in Two Orientations, As Demonstrated Using Paramagnetic Nuclear Magnetic Resonance

scientific article published on 8 December 2015

A Two-Armed Lanthanoid-Chelating Paramagnetic NMR Probe Linked to Proteins via Thioether Linkages

scientific article published on 15 April 2014

A Two-Armed Probe for In-Cell DEER Measurements on Proteins*

scientific article published on 17 November 2020

A caged lanthanide complex as a paramagnetic shift agent for protein NMR.

scientific article

A minor conformation of a lanthanide tag on adenylate kinase characterized by paramagnetic relaxation dispersion NMR spectroscopy.

scientific article

A new type 2 copper cysteinate azurin. Involvement of an engineered exposed cysteine in copper binding through internal rearrangement

scientific article published on 16 August 2002

A pH-sensitive, colorful, lanthanide-chelating paramagnetic NMR probe

scientific article

A pulsed EPR method to determine distances between paramagnetic centers with strong spectral anisotropy and radicals: the dead-time free RIDME sequence

scientific article published on 15 August 2009

A solution model of the complex formed by adrenodoxin and adrenodoxin reductase determined by paramagnetic NMR spectroscopy

scientific article published on 01 August 2010

Accurate long-range distance measurements in a doubly spin-labeled protein by a four-pulse, double electron-electron resonance method

scientific article published on 01 December 2008

Amicyanin metal-site structure and interaction with MADH: PAC and NMR spectroscopy of Ag-, Cd-, and Cu-amicyanin

scientific article published on 5 November 2003

Amicyanin transfers electrons from methylamine dehydrogenase to cytochrome c-551i via a ping-pong mechanism, not a ternary complex

scientific article

An NMR-based docking model for the physiological transient complex between cytochromefand cytochromec6

scientific article published on 01 May 2005

An ensemble of rapidly interconverting orientations in electrostatic protein-peptide complexes characterized by NMR spectroscopy.

scientific article published on 6 February 2014

Binding hot spot in the weak protein complex of physiological redox partners yeast cytochrome C and cytochrome C peroxidase

scientific article published on 08 November 2008

CELL DIVISION CYCLE. Competition between MPS1 and microtubules at kinetochores regulates spindle checkpoint signaling

scientific article published on 11 June 2015

CLaNP-An artificial paramagnetic centre to study proteins by NMR

Chemical Exchange at the Trinuclear Copper Center of Small Laccase from Streptomyces coelicolor

scientific article published on 29 May 2020

Click Chemistry with an Active Site Variant of Azurin

Close Encounters of the Transient Kind: Protein Interactions in the Photosynthetic Redox Chain Investigated by NMR Spectroscopy ⬇️

scientific article published on October 1, 2003

Communication between (L)-galactono-1,4-lactone dehydrogenase and cytochrome c.

scientific article

Complexes of photosynthetic redox proteins studied by NMR

scientific article published on 01 January 2004

Conformation of pseudoazurin in the 152 kDa electron transfer complex with nitrite reductase determined by paramagnetic NMR.

scientific article

Conformational changes during apoplastocyanin folding observed by photocleavable modification and transient grating

scientific article

Conformational exchange in pseudoazurin: different kinds of microsecond to millisecond dynamics characterized by their pH and buffer dependence using 15N NMR relaxation

scientific article published in January 2009

Corrigendum to "The cytochrome c peroxidase and cytochrome c encounter complex: The other side of the story" [FEBS Lett. 588 (2014) 1873-1878].

scientific article published in July 2015

Delicate conformational balance of the redox enzyme cytochrome P450cam

scientific article published on 30 June 2015

Derek Bendall (1930-2014).

scientific article published on 13 May 2015

Design, synthesis, and evaluation of a lanthanide chelating protein probe: CLaNP-5 yields predictable paramagnetic effects independent of environment.

scientific article

Different Modes of Interaction in Cyanobacterial Complexes of Plastocyanin and Cytochromef†

article

Distinguishing the differences in beta-glycosylceramidase folds, dynamics, and actions informs therapeutic uses

article

Dramatic modulation of electron transfer in protein complexes by crosslinking

scientific article

Dynamics in a pure encounter complex of two proteins studied by solution scattering and paramagnetic NMR spectroscopy

scientific article

Dynamics in electron transfer protein complexes

scientific article published on 22 March 2011

Dynamics in the transient complex of plastocyanin-cytochrome f from Prochlorothrix hollandica

scientific article

Dynamics in transient complexes of redox proteins ⬇️

scientific article published on April 1, 2012

Dynamics of ligand binding to a rigid glycosidase

scientific article published on 13 June 2020

Effect of the protein matrix of cytochrome c in suppressing the inherent peroxidase activity of its heme prosthetic group

scientific article published on 01 January 2002

Efficient electron transfer in a protein network lacking specific interactions

scientific article published on 03 October 2011

Efficient encounter complex formation and electron transfer to cytochrome c peroxidase with an additional, distant electrostatic binding site

scientific article published on 22 August 2020

Engineering an allosteric binding site for aminoglycosides into TEM1-β-Lactamase

scientific article

Engineering specificity in a dynamic protein complex with a single conserved mutation

scientific article

Erratum to: PARAssign—paramagnetic NMR assignments of protein nuclei on the basis of pseudocontact shifts

scholarly article published in Journal of Biomolecular NMR

Ferredoxin/ferredoxin-thioredoxin reductase complex: Complete NMR mapping of the interaction site on ferredoxin by gallium substitution

scientific article published on 20 November 2006

Formation of transient protein complexes

scientific article published on 07 August 2013

Functional characterization of the evolutionarily divergent fern plastocyanin.

scientific article

High-field (275 GHz) spin-label EPR for high-resolution polarity determination in proteins

scientific article published on 20 March 2006

Hot-spot residues in the cytochrome P450cam-putidaredoxin binding interface

scientific article published on 2 December 2013

Hydrophobic Interactions Contribute to Conformational Stabilization of Endoglycoceramidase II by Mechanism-Based Probes.

scientific article

Identification of productive and futile encounters in an electron transfer protein complex.

scientific article published on 21 February 2017

Increased paramagnetic effect of a lanthanide protein probe by two-point attachment

scientific article published on 04 July 2007

Intermolecular dynamics studied by paramagnetic tagging.

scientific article published on 10 March 2009

Kinetic stability of the peroxidase activity of unfolded cytochrome c: heme degradation and catalyst inactivation by hydrogen peroxide

scientific article published in November 2003

Linker length dependent binding of a focal adhesion kinase derived peptide to the Src SH3-SH2 domains

scientific article

Long-Range-Distance NMR Effects in a Protein Labeled with a Lanthanide–DOTA Chelate

scientific article published on 01 January 2007

Loss of electrostatic interactions causes increase of dynamics within the plastocyanin-cytochrome f complex

scientific article

Mapping of the binding site on pseudoazurin in the transient 152 kDa complex with nitrite reductase

scientific article published in May 2004

Mapping the encounter state of a transient protein complex by PRE NMR spectroscopy

scientific article

Measurement of a Cu-Cu distance of 26 A by a pulsed EPR method.

scientific article published in January 2003

Methyl group assignment using pseudocontact shifts with PARAssign ⬇️

scientific article published on 27 November 2017

Methyl group reorientation under ligand binding probed by pseudocontact shifts

scientific article published on 02 June 2018

Mobility of TOAC spin-labelled peptides binding to the Src SH3 domain studied by paramagnetic NMR

scientific article

Modelling protein-protein electron transfer in cross-linked dimers of azurin

Modulation of protein-ligand interactions by photocleavage of a cyclic peptide using phosphatidylinositol 3-kinase SH3 domain as model system

scientific article

Multiple paramagnetic effects through a tagged reporter protein

scientific article published on 7 October 2014

Myoglobin and Cytochromeb5: A Nuclear Magnetic Resonance Study of a Highly Dynamic Protein Complex†

scientific article published on 01 October 2002

Narrowing the conformational space sampled by two-domain proteins with paramagnetic probes in both domains

scientific article published on 9 August 2011

New Conformations of Acylation Adducts of Inhibitors of β-Lactamase from Mycobacterium tuberculosis

scientific article published on 30 January 2019

PARAssign--paramagnetic NMR assignments of protein nuclei on the basis of pseudocontact shifts

scientific article

Paramagnetic tagging for protein structure and dynamics analysis

scientific article

Peroxidase activity as a tool for studying the folding of c-type cytochromes

scientific article published in October 2002

Phosphate Promotes the Recovery of Mycobacterium tuberculosis β-Lactamase from Clavulanic Acid Inhibition

scientific article published on 31 October 2017

Plastocyanin-cytochrome f interactions: the influence of hydrophobic patch mutations studied by NMR spectroscopy

scientific article

Probing the reactivity of different forms of azurin by flavin photoreduction

scientific article

Protein docking using an ensemble of spin labels optimized by intra-molecular paramagnetic relaxation enhancement

scientific article published on 10 September 2015

Protonation of a histidine copper ligand in fern plastocyanin

scientific article

Pseudoazurin-Nitrite Reductase Interactions

scholarly article by Antonietta Impagliazzo published in September 2005

Redox-State-Dependent Complex Formation between Pseudoazurin and Nitrite Reductase

article

Removal of slow-pulsing artifacts in in-phase 15N relaxation dispersion experiments using broadband 1H decoupling

scientific article published on 02 June 2018

Replacement of the methionine axial ligand in cytochrome c(550) by a lysine: effects on the haem electronic structure

scientific article published in January 2002

Role of hydrophobic interactions in the encounter complex formation of the plastocyanin and cytochrome f complex revealed by paramagnetic NMR spectroscopy.

scientific article

Shifting the equilibrium between the encounter state and the specific form of a protein complex by interfacial point mutations

scientific article

Small-molecule binding sites on proteins established by paramagnetic NMR spectroscopy

scientific article

Solution structure and dynamics of the complex between cytochrome c and cytochrome c peroxidase determined by paramagnetic NMR

scientific article

Solution structure of the second PDZ domain of the neuronal adaptor X11alpha and its interaction with the C-terminal peptide of the human copper chaperone for superoxide dismutase.

scientific article

Spectroscopic characterization of a high-potential lipo-cupredoxin found in Streptomyces coelicolor.

scientific article

Stabilization of Glucocerebrosidase by Active Site Occupancy.

scientific article published on 9 May 2017

Structural and functional characterization of the alanine racemase from Streptomyces coelicolor A3(2).

scientific article published on 29 December 2016

Structural and functional characterization of the ga-substituted ferredoxin from Synechocystis sp. PCC6803, a mimic of the native protein

scientific article

Structural basis for a PABPN1 aggregation-preventing antibody fragment in OPMD.

scientific article published on 10 March 2010

Structural basis for osmotic regulation of the DNA binding properties of H-NS proteins

scientific article published on 01 February 2020

Structural comparison of crystal and solution states of the 138 kDa complex of methylamine dehydrogenase and amicyanin from Paracoccus versutus

scientific article

Structure determination of protein-protein complexes with long-range anisotropic paramagnetic NMR restraints

scientific article published on 21 December 2013

Structure of the Complex between Plastocyanin and Cytochromeffrom the CyanobacteriumNostocsp. PCC 7119 as Determined by Paramagnetic NMR

scientific article published on 10 February 2005

Ternary protein complex of ferredoxin, ferredoxin:thioredoxin reductase, and thioredoxin studied by paramagnetic NMR spectroscopy

scientific article published on 01 December 2009

The Charge Distribution on a Protein Surface Determines Whether Productive or Futile Encounter Complexes Are Formed

scientific article published on 01 March 2021

The Interactions of Cyanobacterial Cytochromec6and Cytochromef, Characterized by NMR

scientific article published in Journal of Biological Chemistry

The Src SH2 domain interacts dynamically with the focal adhesion kinase binding site as demonstrated by paramagnetic NMR spectroscopy

scientific article published on 2 May 2012

The Ternary Complex of Cytochrome f and Cytochrome c: Identification of a Second Binding Site and Competition for Plastocyanin Binding

article

The Transient Complex of Cytochrome c and Cytochrome c Peroxidase: Insights into the Encounter Complex from Multifrequency EPR and NMR Spectroscopy

scientific article published on 17 April 2020

The complex of cytochrome f and plastocyanin from Nostoc sp. PCC 7119 is highly dynamic

scientific article published on 22 May 2012

The courtship of proteins: understanding the encounter complex

scientific article published on 09 March 2009

The cytochrome c peroxidase and cytochrome c encounter complex: the other side of the story

scientific article

The dynamic complex of cytochrome c6 and cytochrome f studied with paramagnetic NMR spectroscopy

scientific article published on 28 March 2014

The effect of replacing the axial methionine ligand with a lysine residue in cytochrome c-550 from Paracoccus versutus assessed by X-ray crystallography and unfolding.

scientific article

The effects of ligand exchange and mobility on the peroxidase activity of a bacterial cytochrome c upon unfolding

scientific article published in April 2005

The first zinc-binding domain of UvrA is not essential for UvrABC-mediated DNA excision repair ⬇️

scientific article published on October 1, 1993

The orientations of cytochrome c in the highly dynamic complex with cytochrome b5 visualized by NMR and docking using HADDOCK.

scientific article

The structure of the cytochrome p450cam-putidaredoxin complex determined by paramagnetic NMR spectroscopy and crystallography

scientific article

The transient complex of poplar plastocyanin with cytochrome f: effects of ionic strength and pH

scientific article published on 29 December 2004

Transient complexes of redox proteins: structural and dynamic details from NMR studies

scientific article published in November 2004

Transient protein interactions studied by NMR spectroscopy: the case of cytochrome C and adrenodoxin

scientific article published on 01 June 2003

Validation of a lanthanide tag for the analysis of protein dynamics by paramagnetic NMR spectroscopy

scientific article published on 01 July 2010

Visualization of the encounter ensemble of the transient electron transfer complex of cytochrome c and cytochrome c peroxidase

scientific article published on 01 January 2010

Weak self-association of cytochrome c peroxidase molecules observed by paramagnetic NMR

scientific article published on 28 May 2016

β-Lactamase of Mycobacterium tuberculosis Shows Dynamics in the Active Site That Increase upon Inhibitor Binding

scientific article published on 21 February 2020

φ Angle Restraints in Protein Backbones from Dipole−Dipole Cross-Correlation between1HN−15N and1HN−1HαVectors

scientific article published in 2000

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