List of works - Bert van den Berg

A Multidisciplinary Approach toward Identification of Antibiotic Scaffolds for Acinetobacter baumannii

scientific article published on 13 December 2018

Ammonium transceptors: Novel regulators of fungal development

scientific article published on 07 November 2019

An active site water network in the plasminogen activator pla from Yersinia pestis

scientific article

An essential role for the Zn2+ transporter ZIP7 in B cell development

scientific article published on 04 February 2019

An outer membrane protein undergoes enthalpy- and entropy-driven transitions

scientific article

Analysis of gating transitions among the three major open states of the OpdK channel

scientific article

Bacterial cleanup: lateral diffusion of hydrophobic molecules through protein channel walls

scientific article published on 01 October 2010

Cation selectivity is a conserved feature in the OccD subfamily of Pseudomonas aeruginosa

scientific article

Characterisation of the dominant oxidative folding intermediate of hen lysozyme

scientific article published on 01 July 1999

Chitoporin from Serratia marcescens: recombinant expression, purification and crystallization

scientific article published on 29 October 2020

Crystal Structure of Escherichia coli CusC, the Outer Membrane Component of a Heavy Metal Efflux Pump

scientific article

Crystal structure of a COG4313 outer membrane channel.

scientific article published on 7 July 2015

Crystal structure of a full-length autotransporter

scientific article

Crystal structure of the Acinetobacter baumannii outer membrane protein Omp33

scientific article published on 03 September 2018

Crystal structure of the bacterial nucleoside transporter Tsx.

scientific article

Crystal structure of the long-chain fatty acid transporter FadL.

scientific article

Crystal structure of the monomeric porin OmpG

scientific article

Crystal structure of the outer membrane protein OpdK from Pseudomonas aeruginosa

scientific article

Effects of macromolecular crowding on protein folding and aggregation

scientific article

Getting Drugs into Gram-Negative Bacteria: Rational Rules for Permeation through General Porins

scientific article published on 17 August 2018

Getting Drugs through Small Pores: Exploiting the Porins Pathway in Pseudomonas aeruginosa

scientific article published on 08 August 2018

Going forward laterally: transmembrane passage of hydrophobic molecules through protein channel walls

scientific article

Gram-negative trimeric porins have specific LPS binding sites that are essential for porin biogenesis

scientific article published on 04 August 2016

Incorporation of an unnatural amino acid in the active site of porcine pancreatic phospholipase A2. Substitution of histidine by 1,2,4-triazole-3-alanine yields an enzyme with high activity at acidic pH.

scientific article

Lateral gates: β-barrels get in on the act.

scientific article

Ligand-gated diffusion across the bacterial outer membrane

scientific article

Modeling of Specific Lipopolysaccharide Binding Sites on a Gram-Negative Porin

scientific article published on 01 July 2019

NMR structures of phospholipase A2 reveal conformational changes during interfacial activation ⬇️

scientific article published on May 1, 1995

Native-like secondary structure in a peptide from the α-domain of hen lysozyme

scientific article published in December 1996

OccK channels from Pseudomonas aeruginosa exhibit diverse single-channel electrical signatures but conserved anion selectivity

scientific article

Outer-membrane translocation of bulky small molecules by passive diffusion

scientific article published on 26 May 2015

Outer-membrane transport of aromatic hydrocarbons as a first step in biodegradation

scientific article

Porins and small-molecule translocation across the outer membrane of Gram-negative bacteria

scientific article published on 02 December 2019

Quasithermodynamic contributions to the fluctuations of a protein nanopore

scientific article

Rapid, quantitative HPLC analysis ofAsclepias fruticosa L. andDanaus plexippus L. cardenolides

scientific article published on 01 December 1990

Role of Electroosmosis in the Permeation of Neutral Molecules: CymA and Cyclodextrin as an Example

scientific article

Small-Molecule Transport by CarO, an Abundant Eight-Stranded β-Barrel Outer Membrane Protein from Acinetobacter baumannii

scientific article

Solution structure of porcine pancreatic phospholipase A2

scientific article

Structural Basis for Activation of an Integral Membrane Protease by Lipopolysaccharide

scientific article

Structural Basis for Outer Membrane Sugar Uptake in Pseudomonads ⬇️

scientific article published on October 12, 2012

Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii

scientific article

Structural and functional insights into oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis

scientific article published on 11 May 2020

Structural basis for Mep2 ammonium transceptor activation by phosphorylation.

scientific article published on 18 April 2016

Structural basis for chitin acquisition by marine Vibrio species

scientific article published on 15 January 2018

Structural basis for maintenance of bacterial outer membrane lipid asymmetry

scientific article published on 16 October 2017

Structural basis for membrane recruitment and allosteric activation of cytohesin family Arf GTPase exchange factors

scientific article

Structural basis for nutrient acquisition by dominant members of the human gut microbiota

scientific article

Structural insight into OprD substrate specificity

scientific article

Structure and function of a novel periplasmic chitooligosaccharide-binding protein from marine Vibrio bacteria.

scientific article published on 14 February 2018

Structure, Dynamics, and Substrate Specificity of the OprO Porin from Pseudomonas aeruginosa

scientific article

Substrate Specificity within a Family of Outer Membrane Carboxylate Channels

scientific article

The Crystal Structure of OprG from Pseudomonas aeruginosa, a Potential Channel for Transport of Hydrophobic Molecules across the Outer Membrane

scientific article

The FadL family: unusual transporters for unusual substrates

scientific article

The outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel

scientific article

The oxidative refolding of hen lysozyme and its catalysis by protein disulfide isomerase.

scientific article published on September 1999

TonB-dependent transport by the gut microbiota: novel aspects of an old problem.

scientific article published on 15 March 2018

Toward Understanding the Outer Membrane Uptake of Small Molecules by Pseudomonas aeruginosa

scientific article

Transmembrane passage of hydrophobic compounds through a protein channel wall

scientific article

Unusual Constriction Zones in the Major Porins OmpU and OmpT from Vibrio cholerae

scholarly article by Monisha Pathania published in May 2018

Uptake of monoaromatic hydrocarbons during biodegradation by FadL channel-mediated lateral diffusion

article

List of works by Bert van den Berg

A Multidisciplinary Approach toward Identification of Antibiotic Scaffolds for Acinetobacter baumannii

Ammonium transceptors: Novel regulators of fungal development

An active site water network in the plasminogen activator pla from Yersinia pestis

An essential role for the Zn2+ transporter ZIP7 in B cell development

An outer membrane protein undergoes enthalpy- and entropy-driven transitions

Analysis of gating transitions among the three major open states of the OpdK channel

Bacterial cleanup: lateral diffusion of hydrophobic molecules through protein channel walls

Cation selectivity is a conserved feature in the OccD subfamily of Pseudomonas aeruginosa

Characterisation of the dominant oxidative folding intermediate of hen lysozyme

Chitoporin from Serratia marcescens: recombinant expression, purification and crystallization

Crystal Structure of Escherichia coli CusC, the Outer Membrane Component of a Heavy Metal Efflux Pump

Crystal structure of a COG4313 outer membrane channel.

Crystal structure of a full-length autotransporter

Crystal structure of the Acinetobacter baumannii outer membrane protein Omp33

Crystal structure of the bacterial nucleoside transporter Tsx.

Crystal structure of the long-chain fatty acid transporter FadL.

Crystal structure of the monomeric porin OmpG

Crystal structure of the outer membrane protein OpdK from Pseudomonas aeruginosa

Effects of macromolecular crowding on protein folding and aggregation

Getting Drugs into Gram-Negative Bacteria: Rational Rules for Permeation through General Porins

Getting Drugs through Small Pores: Exploiting the Porins Pathway in Pseudomonas aeruginosa

Going forward laterally: transmembrane passage of hydrophobic molecules through protein channel walls

Gram-negative trimeric porins have specific LPS binding sites that are essential for porin biogenesis

Incorporation of an unnatural amino acid in the active site of porcine pancreatic phospholipase A2. Substitution of histidine by 1,2,4-triazole-3-alanine yields an enzyme with high activity at acidic pH.

Lateral gates: β-barrels get in on the act.

Ligand-gated diffusion across the bacterial outer membrane

Modeling of Specific Lipopolysaccharide Binding Sites on a Gram-Negative Porin

NMR structures of phospholipase A2 reveal conformational changes during interfacial activation ⬇️

Native-like secondary structure in a peptide from the α-domain of hen lysozyme

OccK channels from Pseudomonas aeruginosa exhibit diverse single-channel electrical signatures but conserved anion selectivity

Outer-membrane translocation of bulky small molecules by passive diffusion

Outer-membrane transport of aromatic hydrocarbons as a first step in biodegradation

Porins and small-molecule translocation across the outer membrane of Gram-negative bacteria

Quasithermodynamic contributions to the fluctuations of a protein nanopore

Rapid, quantitative HPLC analysis ofAsclepias fruticosa L. andDanaus plexippus L. cardenolides

Role of Electroosmosis in the Permeation of Neutral Molecules: CymA and Cyclodextrin as an Example

Small-Molecule Transport by CarO, an Abundant Eight-Stranded β-Barrel Outer Membrane Protein from Acinetobacter baumannii

Solution structure of porcine pancreatic phospholipase A2

Structural Basis for Activation of an Integral Membrane Protease by Lipopolysaccharide

Structural Basis for Outer Membrane Sugar Uptake in Pseudomonads ⬇️

Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii

Structural and functional insights into oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis

Structural basis for Mep2 ammonium transceptor activation by phosphorylation.

Structural basis for chitin acquisition by marine Vibrio species

Structural basis for maintenance of bacterial outer membrane lipid asymmetry

Structural basis for membrane recruitment and allosteric activation of cytohesin family Arf GTPase exchange factors

Structural basis for nutrient acquisition by dominant members of the human gut microbiota

Structural insight into OprD substrate specificity

Structure and function of a novel periplasmic chitooligosaccharide-binding protein from marine Vibrio bacteria.

Structure, Dynamics, and Substrate Specificity of the OprO Porin from Pseudomonas aeruginosa

Substrate Specificity within a Family of Outer Membrane Carboxylate Channels

The Crystal Structure of OprG from Pseudomonas aeruginosa, a Potential Channel for Transport of Hydrophobic Molecules across the Outer Membrane

The FadL family: unusual transporters for unusual substrates

The outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel

The oxidative refolding of hen lysozyme and its catalysis by protein disulfide isomerase.

TonB-dependent transport by the gut microbiota: novel aspects of an old problem.

Toward Understanding the Outer Membrane Uptake of Small Molecules by Pseudomonas aeruginosa

Transmembrane passage of hydrophobic compounds through a protein channel wall

Unusual Constriction Zones in the Major Porins OmpU and OmpT from Vibrio cholerae

Uptake of monoaromatic hydrocarbons during biodegradation by FadL channel-mediated lateral diffusion