List of works - Özkan Yıldız

A new type of Na(+)-driven ATP synthase membrane rotor with a two-carboxylate ion-coupling motif

scientific article

A new type of proton coordination in an F(1)F(o)-ATP synthase rotor ring

scientific article

Alternating-access mechanism in conformationally asymmetric trimers of the betaine transporter BetP

scientific article

Correction: A New Type of Proton Coordination in an F1Fo-ATP Synthase Rotor Ring

scholarly article published in PLOS Biology

Correction: A New Type of Proton Coordination in an F1Fo-ATP Synthase Rotor Ring.

scientific article

Correlation between the OmpG secondary structure and its pH-dependent alterations monitored by FTIR

scientific article

CryoEM structures of membrane pore and prepore complex reveal cytolytic mechanism of Pneumolysin

scientific article

Crystal Structure of a Histone Deacetylase Homologue from Pseudomonas aeruginosa.

scientific article published on 29 November 2016

Crystal structure and interactions of the PAS repeat region of the Drosophila clock protein PERIOD.

scientific article published in January 2005

Crystal structure of listeriolysin O reveals molecular details of oligomerization and pore formation

scientific article

Crystallization and X-ray crystallographic analysis of the cholesterol-dependent cytolysin listeriolysin O from Listeria monocytogenes

scientific article published on 17 October 2013

Directly Observing the Lipid-Dependent Self-Assembly and Pore-Forming Mechanism of the Cytolytic Toxin Listeriolysin O.

scientific article published on 24 August 2015

Dual energy landscape: the functional state of the β-barrel outer membrane protein G molds its unfolding energy landscape

scientific article

Electrogenic Cation Binding in the Electroneutral Na+/H+ Antiporter of Pyrococcus abyssi.

scientific article

Enzymatic properties and substrate specificity of a bacterial phosphatidylcholine synthase

scientific journal article

High-resolution structure and mechanism of an F/V-hybrid rotor ring in a Na⁺-coupled ATP synthase

scientific article

High-resolution structure of the rotor ring of a proton-dependent ATP synthase

scientific article

IR-spectroscopic characterization of an elongated OmpG mutant

scientific article

In situ opening/closing of OmpG from E. coli and the splitting of β-sheet signals in ATR-FTIR spectroscopy.

scientific article

Mechanism of Na(+)-dependent citrate transport from the structure of an asymmetrical CitS dimer

scientific article published on 4 December 2015

Mechanism of the electroneutral sodium/proton antiporter PaNhaP from transition-path shooting

scientific article published on 15 April 2019

Membrane perforation by the pore-forming toxin pneumolysin

scientific article published on 17 June 2019

Microscopic rotary mechanism of ion translocation in the F(o) complex of ATP synthases

scientific article

Novel type of Ras effector interaction established between tumour suppressor NORE1A and Ras switch II

scientific article

One beta hairpin after the other: exploring mechanical unfolding pathways of the transmembrane beta-barrel protein OmpG.

scientific article

One β hairpin follows the other: exploring refolding pathways and kinetics of the transmembrane β-barrel protein OmpG.

scientific article

Purification, Refolding, and Crystallization of the Outer Membrane Protein OmpG from Escherichia coli

scientific article

Purification, crystallization and preliminary X-ray diffraction analysis of the FeoB G domain from Methanococcus jannaschii

scientific article published on 27 June 2009

Reply to Desikan et al.: Micelle formation among various mechanisms of toxin pore formation

scientific article published on 25 February 2020

Self-assembly of the general membrane-remodeling protein PVAP into sevenfold virus-associated pyramids

scientific article

Structural and Functional Analyses of PAS Domain Interactions of the Clock Proteins Drosophila PERIOD and Mouse PERIOD2

scientific article

Structural basis of proton translocation and force generation in mitochondrial ATP synthase

scientific article published on 6 December 2017

Structural evidence for functional lipid interactions in the betaine transporter BetP

scientific article

Structure and function of the FeoB G-domain from Methanococcus jannaschii

scientific article

Structure and substrate ion binding in the sodium/proton antiporter PaNhaP.

scientific article published on 26 November 2014

Structure and transport mechanism of the sodium/proton antiporter MjNhaP1.

scientific article published on 26 November 2014

Structure of GlnK1 with bound effectors indicates regulatory mechanism for ammonia uptake

scientific article

Structure of Human Na+/H+ Exchanger NHE1 Regulatory Region in Complex with Calmodulin and Ca2+

scientific article

Structure of the archaeal Na+/H+ antiporter NhaP1 and functional role of transmembrane helix 1.

scientific article published on 10 December 2010

Structure of the monomeric outer-membrane porin OmpG in the open and closed conformation

scientific article

Structure of the monomeric outer-membrane porin OmpG in the open and closed conformation

article

Structure of the mycobacterial ATP synthase Fo rotor ring in complex with the anti-TB drug bedaquiline

scientific article

The Role of Lipids for the Functional Integrity of Porin: An FTIR Study Using Lipid and Protein Reporter Groups†

scientific article published in 2008

The c-ring ion binding site of the ATP synthase fromBacillus pseudofirmus OF4 is adapted to alkaliphilic lifestyle

scientific article

The c-ring stoichiometry of ATP synthase is adapted to cell physiological requirements of alkaliphilic Bacillus pseudofirmus OF4

scientific article

Toward Photopharmacological Antimicrobial Chemotherapy Using Photoswitchable Amidohydrolase Inhibitors.

scientific article

Unraveling the Pore-Forming Steps of Pneumolysin from Streptococcus pneumoniae.

scientific article published on 31 October 2016

pH-dependent interactions guide the folding and gate the transmembrane pore of the beta-barrel membrane protein OmpG.

scientific article

pH-induced conformational change of the beta-barrel-forming protein OmpG reconstituted into native E. coli lipids

scientific article

List of works by Özkan Yıldız

A new type of Na(+)-driven ATP synthase membrane rotor with a two-carboxylate ion-coupling motif

A new type of proton coordination in an F(1)F(o)-ATP synthase rotor ring

Alternating-access mechanism in conformationally asymmetric trimers of the betaine transporter BetP

Correction: A New Type of Proton Coordination in an F1Fo-ATP Synthase Rotor Ring

Correction: A New Type of Proton Coordination in an F1Fo-ATP Synthase Rotor Ring.

Correlation between the OmpG secondary structure and its pH-dependent alterations monitored by FTIR

CryoEM structures of membrane pore and prepore complex reveal cytolytic mechanism of Pneumolysin

Crystal Structure of a Histone Deacetylase Homologue from Pseudomonas aeruginosa.

Crystal structure and interactions of the PAS repeat region of the Drosophila clock protein PERIOD.

Crystal structure of listeriolysin O reveals molecular details of oligomerization and pore formation

Crystallization and X-ray crystallographic analysis of the cholesterol-dependent cytolysin listeriolysin O from Listeria monocytogenes

Directly Observing the Lipid-Dependent Self-Assembly and Pore-Forming Mechanism of the Cytolytic Toxin Listeriolysin O.

Dual energy landscape: the functional state of the β-barrel outer membrane protein G molds its unfolding energy landscape

Electrogenic Cation Binding in the Electroneutral Na+/H+ Antiporter of Pyrococcus abyssi.

Enzymatic properties and substrate specificity of a bacterial phosphatidylcholine synthase

High-resolution structure and mechanism of an F/V-hybrid rotor ring in a Na⁺-coupled ATP synthase

High-resolution structure of the rotor ring of a proton-dependent ATP synthase

IR-spectroscopic characterization of an elongated OmpG mutant

In situ opening/closing of OmpG from E. coli and the splitting of β-sheet signals in ATR-FTIR spectroscopy.

Mechanism of Na(+)-dependent citrate transport from the structure of an asymmetrical CitS dimer

Mechanism of the electroneutral sodium/proton antiporter PaNhaP from transition-path shooting

Membrane perforation by the pore-forming toxin pneumolysin

Microscopic rotary mechanism of ion translocation in the F(o) complex of ATP synthases

Novel type of Ras effector interaction established between tumour suppressor NORE1A and Ras switch II

One beta hairpin after the other: exploring mechanical unfolding pathways of the transmembrane beta-barrel protein OmpG.

One β hairpin follows the other: exploring refolding pathways and kinetics of the transmembrane β-barrel protein OmpG.

Purification, Refolding, and Crystallization of the Outer Membrane Protein OmpG from Escherichia coli

Purification, crystallization and preliminary X-ray diffraction analysis of the FeoB G domain from Methanococcus jannaschii

Reply to Desikan et al.: Micelle formation among various mechanisms of toxin pore formation

Self-assembly of the general membrane-remodeling protein PVAP into sevenfold virus-associated pyramids

Structural and Functional Analyses of PAS Domain Interactions of the Clock Proteins Drosophila PERIOD and Mouse PERIOD2

Structural basis of proton translocation and force generation in mitochondrial ATP synthase

Structural evidence for functional lipid interactions in the betaine transporter BetP

Structure and function of the FeoB G-domain from Methanococcus jannaschii

Structure and substrate ion binding in the sodium/proton antiporter PaNhaP.

Structure and transport mechanism of the sodium/proton antiporter MjNhaP1.

Structure of GlnK1 with bound effectors indicates regulatory mechanism for ammonia uptake

Structure of Human Na+/H+ Exchanger NHE1 Regulatory Region in Complex with Calmodulin and Ca2+

Structure of the archaeal Na+/H+ antiporter NhaP1 and functional role of transmembrane helix 1.

Structure of the monomeric outer-membrane porin OmpG in the open and closed conformation

Structure of the monomeric outer-membrane porin OmpG in the open and closed conformation

Structure of the mycobacterial ATP synthase Fo rotor ring in complex with the anti-TB drug bedaquiline

The Role of Lipids for the Functional Integrity of Porin: An FTIR Study Using Lipid and Protein Reporter Groups†

The c-ring ion binding site of the ATP synthase fromBacillus pseudofirmus OF4 is adapted to alkaliphilic lifestyle

The c-ring stoichiometry of ATP synthase is adapted to cell physiological requirements of alkaliphilic Bacillus pseudofirmus OF4

Toward Photopharmacological Antimicrobial Chemotherapy Using Photoswitchable Amidohydrolase Inhibitors.

Unraveling the Pore-Forming Steps of Pneumolysin from Streptococcus pneumoniae.

pH-dependent interactions guide the folding and gate the transmembrane pore of the beta-barrel membrane protein OmpG.

pH-induced conformational change of the beta-barrel-forming protein OmpG reconstituted into native E. coli lipids