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List of works by Giovanni Ciriello

<i>CXCL9:SPP1</i> macrophage polarity identifies a network of cellular programs that control human cancers

scientific article published on 03 August 2023

A Multi-Method Approach for Proteomic Network Inference in 11 Human Cancers

scientific article

A review on models and algorithms for motif discovery in protein-protein interaction networks

scientific article

Algorithmic re-structuring and data replication for protein structure comparison on a GRID

AlignNemo: a local network alignment method to integrate homology and topology

scientific article

An epidemiologic and genomic investigation into the obesity paradox in renal cell carcinoma

scientific article

Analysis of interactions between ribosomal proteins and RNA structural motifs

scientific article

Application re-structuring and data management on a grid environment: a case study for bioinformatics

Collection, integration and analysis of cancer genomic profiles: from data to insight

scientific article

Comparison of computational methods for the identification of topologically associating domains

article published in 2018

Comprehensive Genetic Landscape of Uveal Melanoma by Whole-Genome Sequencing.

scientific article published on 13 October 2016

Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer

scientific article

Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma

scientific article

Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma

article

Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas

scientific article

Conditional Selection of Genomic Alterations Dictates Cancer Evolution and Oncogenic Dependencies

scientific article

Discovering functional evolutionary dependencies in human cancers

scientific article published on 28 September 2020

EZH2 oncogenic mutations drive epigenetic, transcriptional, and structural changes within chromatin domains

scientific article published on 28 January 2019

Emerging landscape of oncogenic signatures across human cancers

scientific article

Finding 3D motifs in ribosomal RNA structures

scientific article

Frequent disruption of the RB pathway in indolent follicular lymphoma suggests a new combination therapy

scientific article

Generation of tumor-targeted human T lymphocytes from induced pluripotent stem cells for cancer therapy

scientific article

Genetic and epigenetic inactivation of SESTRIN1 controls mTORC1 and response to EZH2 inhibition in follicular lymphoma.

scientific article published on June 2017

Impact of recurrent copy number alterations and cancer gene mutations on the predictive accuracy of prognostic models in clear cell renal cell carcinoma

scientific article

Loss of the HVEM Tumor Suppressor in Lymphoma and Restoration by Modified CAR-T Cells

scientific article published on 26 September 2016

Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas

scientific article published in April 2018

Multilevel Genomics-Based Taxonomy of Renal Cell Carcinoma

scientific article published on 2 March 2016

Mutual exclusivity analysis identifies oncogenic network modules

scientific article published on 9 September 2011

Oncogenic Signaling Pathways in The Cancer Genome Atlas

scientific article published in April 2018

Pan-Cancer Analysis of Mutation Hotspots in Protein Domains

scientific article published on 23 September 2015

Pan-Cancer Landscape of Aberrant DNA Methylation across Human Tumors

article

Pan-SRC kinase inhibition blocks B-cell receptor oncogenic signaling in non-Hodgkin lymphoma.

scientific article

Pan-cancer inference of intra-tumor heterogeneity reveals associations with different forms of genomic instability

scholarly article by Franck Raynaud published in September 2018

Publisher Correction: Uncoupling protein 2 reprograms the tumor microenvironment to support the anti-tumor immune cycle

scientific article published on 01 April 2019

SQSTM1 is a pathogenic target of 5q copy number gains in kidney cancer

scientific article published on December 2013

Systematic assessment of gene co-regulation within chromatin domains determines differentially active domains across human cancers

scientific article published on 03 August 2021

Systematic identification of cancer driving signaling pathways based on mutual exclusivity of genomic alterations

scientific article

Systematic inference and comparison of multi-scale chromatin sub-compartments connects spatial organization to cell phenotypes

scientific article published on 10 May 2021

The Somatic Genomic Landscape of Glioblastoma

article

The molecular basis of breast cancer pathological phenotypes

scientific article published on 14 November 2016

The molecular diversity of Luminal A breast tumors

scientific article published on 06 October 2013

The serine hydroxymethyltransferase-2 (SHMT2) initiates lymphoma development through epigenetic tumor suppressor silencing

scientific article published on 22 June 2020

The somatic genomic landscape of glioblastoma

scientific article

Uncoupling protein 2 reprograms the tumor microenvironment to support the anti-tumor immune cycle

scientific article published on 21 January 2019

Using MEMo to discover mutual exclusivity modules in cancer

scientific article published on March 2013

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