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List of works by Gianni Cesareni

31st Annual Meeting and Associated Programs of the Society for Immunotherapy of Cancer (SITC 2016): part two: National Harbor, MD, USA. 9-13 November 2016

scientific article published oln 16 November 2016

3D hydrogel environment rejuvenates aged pericytes for skeletal muscle tissue engineering

scientific article

A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules

scientific article

A subset of RAB proteins modulates PP2A phosphatase activity

scientific article published on 09 September 2016

Activation of the Pro-Oxidant PKCβII-p66Shc Signaling Pathway Contributes to Pericyte Dysfunction in Skeletal Muscles of Patients With Diabetes With Critical Limb Ischemia.

scientific article published on 6 September 2016

Adipogenesis of skeletal muscle fibro/adipogenic progenitors is affected by the WNT5a/GSK3/β-catenin axis

scientific article published on 07 May 2020

Alterations in the phosphoproteomic profile of cells expressing a non-functional form of the SHP2 phosphatase.

scientific article published on 24 August 2015

An Overview of BioCreative II.5.

scientific article published on July 2010

Approaches to Analyze Protein Interactions.

scientific article

Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins

scientific article

Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases

scientific article

Binding to DPF-motif by the POB1 EH domain is responsible for POB1-Eps15 interaction

scientific article

BioCreative III interactive task: an overview

scientific article

Biofabricating murine and human myo-substitutes for rapid volumetric muscle loss restoration

scientific article published on 15 February 2021

Both Intrinsic Substrate Preference and Network Context Contribute to Substrate Selection of Classical Tyrosine Phosphatases

scientific article published on 3 February 2017

Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions

scientific article

CUBAN, a Case Study of Selective Binding: Structural Details of the Discrimination between Ubiquitin and NEDD8 ⬇️

scientific article published on 08 March 2019

Can we infer peptide recognition specificity mediated by SH3 domains?

scientific article

CancerGeneNet: linking driver genes to cancer hallmarks

scientific article published on 01 January 2020

CausalTab: PSI-MITAB 2.8 updated format for signaling data representation and dissemination

scientific article published on 6 August 2018

Characterization by mass cytometry of different methods for the preparation of muscle mononuclear cells.

scientific article

CoCUN, a Novel Ubiquitin Binding Domain Identified in N4BP1

scientific article published on 17 July 2019

Combining affinity proteomics and network context to identify new phosphatase substrates and adapters in growth pathways.

scientific article published on 7 May 2014

Combining peptide recognition specificity and context information for the prediction of the 14-3-3-mediated interactome in S. cerevisiae and H. sapiens

scientific article published on 06 December 2010

Combining phosphoproteomics datasets and literature information to reveal the functional connections in a cell phosphorylation network

scientific article published on 26 December 2017

Comparative interactomics

scientific article

Comparative interactomics: comparing apples and pears?

scientific article

Conjugation to Nedd8 instigates ubiquitylation and down-regulation of activated receptor tyrosine kinases

scientific article published on 30 May 2006

Corrigendum: 3D hydrogel environment rejuvenates aged pericytes for skeletal muscle tissue engineering

scholarly article by Claudia Fuoco et al published 2019 in Frontiers in Physiology

Counteracting effects operating on Src homology 2 domain-containing protein-tyrosine phosphatase 2 (SHP2) function drive selection of the recurrent Y62D and Y63C substitutions in Noonan syndrome

scientific article published on 18 June 2012

DISNOR: a disease network open resource.

scientific article published on 3 October 2017

DOMINO: a database of domain-peptide interactions

scientific article

Deep Proteomics of Breast Cancer Cells Reveals that Metformin Rewires Signaling Networks Away from a Pro-growth State.

scientific article published on 3 March 2016

Degradation of p63 by Itch

scientific article

Diverse driving forces underlie the invariant occurrence of the T42A, E139D, I282V and T468M SHP2 amino acid substitutions causing Noonan and LEOPARD syndromes

scientific article

ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins

scientific article

Enriching the viral-host interactomes with interactions mediated by SH3 domains

scientific article

Erratum: Corrigendum: Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

article

Erratum: Nepravishta, R., et al. CoCUN, a Novel Ubiquitin Binding Domain Identified in N4BP1. Biomolecules 2019, 9, 284

scientific article published on 28 November 2019

Exploring the diversity of SPRY/B30.2-mediated interactions

scientific article published on 17 November 2012

Fibro-adipogenic progenitors of dystrophic mice are insensitive to NOTCH regulation of adipogenesis

scientific article published on 25 June 2019

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences

scientific article

Gene Regulatory Network Modeling of Macrophage Differentiation Corroborates the Continuum Hypothesis of Polarization States

article

Glucosylceramide synthase and its functional interaction with RTN-1C regulate chemotherapeutic-induced apoptosis in neuroepithelioma cells

scientific article (publication date: 15 July 2003)

Group I Paks support muscle regeneration and counteract cancer-associated muscle atrophy.

scientific article

HiPPO and PANDA: Two Bioinformatics Tools to Support Analysis of Mass Cytometry Data

scientific article published on 20 December 2019

HiPPO and PANDA: two bioinformatics tools to support analysis of high-dimensional mass cytometry data

High-Dimensional Single-Cell Quantitative Profiling of Skeletal Muscle Cell Population Dynamics during Regeneration

scientific article published on 18 July 2020

HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms

scientific article published in December 2005

HuPho: the human phosphatase portal

scientific article published on 24 August 2012

Identification of new substrates of the protein-tyrosine phosphatase PTP1B by Bayesian integration of proteome evidence

scientific article published on December 2010

In vitro evolution of recognition specificity mediated by SH3 domains reveals target recognition rules

scientific article

Inhibition of the c-Abl-TAp63 pathway protects mouse oocytes from chemotherapy-induced death

scientific article published on 27 September 2009

IntAct: an open source molecular interaction database

scientific article

Janus effect of glucocorticoids on differentiation of muscle fibro/adipogenic progenitors

scientific article published on 24 March 2020

KinomeXplorer: an integrated platform for kinome biology studies

scientific article

Linking entries in protein interaction database to structured text: the FEBS Letters experiment.

scientific article published on 06 March 2008

Lowe syndrome-linked endocytic adaptors direct membrane cycling kinetics with OCRL in Dictyostelium discoideum

scientific article published on 19 June 2019

MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data

scientific article

MINT, the molecular interaction database: 2009 update

scientific article (publication date: 2010)

MINT, the molecular interaction database: 2012 update

scientific article

MINT: a Molecular INTeraction database

scientific article (publication date: 20 February 2002)

MINT: the Molecular INTeraction database

scientific article

Mapping the human phosphatome on growth pathways

scientific article

Metabolic reprogramming of fibro/adipogenic progenitors facilitates muscle regeneration

scientific article published on 04 February 2020

Metformin Delays Satellite Cell Activation and Maintains Quiescence.

scientific article published on 24 April 2019

Metformin protects skeletal muscle from cardiotoxin induced degeneration

scientific article

Methods to reveal domain networks

scientific article published in August 2005

Microfluidic-enhanced 3D bioprinting of aligned myoblast-laden hydrogels leads to functionally organized myofibers in vitro and in vivo

scientific article published on 23 March 2017

Molecular recognition in helix-loop-helix and helix-loop-helix-leucine zipper domains. Design of repertoires and selection of high affinity ligands for natural proteins

scientific article

Myo-REG: A Portal for Signaling Interactions in Muscle Regeneration

scientific article published on 27 September 2019

Normalization of nomenclature for peptide motifs as ligands of modular protein domains

scientific article

Osteogenic differentiation of skeletal muscle progenitor cells is activated by the DNA damage response

scientific article published on 01 April 2019

Oxidative Stress, DNA Damage, and c-Abl Signaling: At the Crossroad in Neurodegenerative Diseases?

scientific article published on 18 June 2012

PSICQUIC and PSISCORE: accessing and scoring molecular interactions

scientific article (publication date: 29 June 2011)

Peptide Recognition Module Networks: Combining Phage Display with Two-Hybrid Analysis to Define Protein-Protein Interactions

Physical and Functional Interaction between p53 Mutants and Different Isoforms of p73

scientific article published in Journal of Biological Chemistry

Probing protein-tyrosine phosphatase substrate specificity using a phosphotyrosine-containing phage library

scientific article published on 24 October 2003

Profiling Phosphopeptide-Binding Domain Recognition Specificity Using Peptide Microarrays

scientific article

ProtNet: a tool for stochastic simulations of protein interaction networks dynamics

scientific article

Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

scientific article

Protein interaction networks by proteome peptide scanning

scientific article

Protein interactions: integration leads to belief

scientific article published on 09 May 2008

Reactive oxygen species and epidermal growth factor are antagonistic cues controlling SHP-2 dimerization

scientific article published on 12 March 2012

Recurated protein interaction datasets

article

Regulation of myoblast differentiation by metabolic perturbations induced by metformin.

scientific article

Reply to: Cisplatin-induced primordial follicle oocyte killing and loss of fertility are not prevented by imatinib.

scientific article published in August 2012

Ring Finger Protein 11 acts on ligand-activated EGFR via the direct interaction with the UIM region of ANKRD13 protein family

scientific article published on 27 January 2020

Role of 14-3-3 proteins in the regulation of neutral trehalase in the yeast Saccharomyces cerevisiae

scientific article

SCA-1 micro-heterogeneity in the fate decision of dystrophic fibro/adipogenic progenitors

scientific article published on 25 January 2021

SIGNOR 2.0, the SIGnaling Network Open Resource 2.0: 2019 update

scientific article published on 01 January 2020

SIGNOR: A Database of Causal Relationships Between Biological Entities-A Short Guide to Searching and Browsing

scientific article

SIGNOR: a database of causal relationships between biological entities.

scientific article

SPV: a JavaScript Signaling Pathway Visualizer.

scientific article

Searching the MINT database for protein interaction information

scientific article published on June 2008

Searching the MINT database for protein interaction information

scientific article published on 01 August 2003

Searching the protein interaction space through the MINT database.

scientific article

Selection of ligands by panning of domain libraries displayed on phage lambda reveals new potential partners of synaptojanin 1

scientific article (publication date: 13 April 2001)

Selectivity and promiscuity in the interaction network mediated by protein recognition modules

scientific article published on June 2004

Selectivity of the CUBAN domain in the recognition of ubiquitin and NEDD8

scientific article published on 05 February 2019

Single-cell mass cytometry and transcriptome profiling reveal the impact of graphene on human immune cells.

scientific article

Special issue - modular protein domains

scientific article published on 17 June 2012

Spotlight on... Gianni Cesareni. An interview by Daniela Ruffell .

scientific article published on 20 March 2008

Structural and functional protein network analyses predict novel signaling functions for rhodopsin ⬇️

scientific article published on November 22, 2011

Structural studies and SH3 domain binding properties of a human antiviral salivary proline-rich peptide

scientific article published on 7 June 2016

Synapsin is a novel Rab3 effector protein on small synaptic vesicles. I. Identification and characterization of the synapsin I-Rab3 interactions in vitro and in intact nerve terminals

scientific article

The 4G10, pY20 and p-TYR-100 antibody specificity: profiling by peptide microarrays

scientific article published on 13 December 2011

The E3 ligase Aip4/Itch ubiquitinates and targets ErbB-4 for degradation

scientific article

The FEBS Letters SDA corpus: a collection of protein interaction articles with high quality annotations for the BioCreative II.5 online challenge and the text mining community

scientific article published on 20 August 2010

The FEBS Letters/BioCreative II.5 experiment: making biological information accessible.

scientific article

The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data

scientific article (publication date: February 2004)

The IMEx Coronavirus interactome: an evolving map of Coronaviridae-Host molecular interactions

scientific article published on 16 June 2020

The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases

scientific article (publication date: 2014)

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

scientific article

The SH2 domain interaction landscape

scientific article

The adapter protein CD2AP binds to p53 protein in the cytoplasm and can discriminate its polymorphic variants P72R.

scientific article published on 26 September 2014

The cell-autonomous mechanisms underlying the activity of metformin as an anticancer drug

scientific article

The central proline rich region of POB1/REPS2 plays a regulatory role in epidermal growth factor receptor endocytosis by binding to 14-3-3 and SH3 domain-containing proteins

scientific article

The hierarchical organization of natural protein interaction networks confers self-organization properties on pseudocells

scientific article published on June 2015

The human phosphatase interactome: An intricate family portrait

scientific article

The immunosuppressant drug azathioprine restrains adipogenesis of muscle Fibro/Adipogenic Progenitors from dystrophic mice by affecting AKT signaling

scientific article published on 13 March 2019

The minimum information required for reporting a molecular interaction experiment (MIMIx).

scientific article published on August 2007

The protein interaction network mediated by human SH3 domains

scientific article published on 29 June 2011

The ubiquitin-protein ligase Itch regulates p73 stability

scientific article

Tools and data services registry: a community effort to document bioinformatics resources

scientific article

Toward High-Dimensional Single-Cell Analysis of Graphene Oxide Biological Impact: Tracking on Immune Cells by Single-Cell Mass Cytometry

scientific article published on 27 April 2020

Towards a unified open access dataset of molecular interactions

scientific article published on 01 December 2020

Transcription Factor Activation Profiles (TFAP) identify compounds promoting differentiation of Acute Myeloid Leukemia cell lines

scientific article published on 10 January 2022

Tumor suppressor density-enhanced phosphatase-1 (DEP-1) inhibits the RAS pathway by direct dephosphorylation of ERK1/2 kinases

scientific article

Unusual binding properties of the SH3 domain of the yeast actin-binding protein Abp1: structural and functional analysis

scientific article

VirusMINT: a viral protein interaction database

scientific article

VirusMentha: a new resource for virus-host protein interactions

scientific article

WI-PHI: a weighted yeast interactome enriched for direct physical interactions

mentha: a resource for browsing integrated protein-interaction networks

scientific article published in August 2013

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