List of works by Karthik Gangavarapu

An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

article published in 2018

Branch: an interactive, web-based tool for testing hypotheses and developing predictive models

scientific article

CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer

scientific article (publication date: 31 January 2017)

CIViC: A knowledgebase for expert-crowdsourcing the clinical interpretation of variants in cancer

Ebola vaccine–induced protection in nonhuman primates correlates with antibody specificity and Fc-mediated effects

scientific article published in 2021

Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework

scientific article published on 06 November 2020

Genome sequencing reveals Zika virus diversity and spread in the Americas

scientific article (publication date: 18 February 2017)

Genomic epidemiology reveals multiple introductions of Zika virus into the United States ⬇️

scientific article

High crossreactivity of human T cell responses between Lassa virus lineages

scientific article published on 06 March 2020

International travelers and genomics uncover a ‘hidden’ Zika outbreak

scientific article published on 14 December 2018

Multiple introductions of Zika virus into the United States revealed through genomic epidemiology

scientific article

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

scientific article (publication date: 9 January 2017)

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.

scientific article

Ontogeny of the B- and T-cell response in a primary Zika virus infection of a dengue-naïve individual during the 2016 outbreak in Miami, FL.

scientific article published on 21 December 2017

Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations

scientific article published on 23 February 2023

Systematic Analysis of Monoclonal Antibodies against Ebola Virus GP Defines Features that Contribute to Protection

Travel Surveillance and Genomics Uncover a Hidden Zika Outbreak during the Waning Epidemic

scholarly article by Nathan D. Grubaugh et al published 22 August 2019 in Cell

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