List of works - Karel Svoboda

A Cre-dependent GCaMP3 reporter mouse for neuronal imaging in vivo

scientific article published in February 2012

A Map of Anticipatory Activity in Mouse Motor Cortex

scientific article published in May 2017

A cortico-cerebellar loop for motor planning

scientific article published in Nature

A genetically encoded fluorescent sensor of ERK activity

scholarly article

A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues

scientific article published in 2022

A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging

scientific article published on 14 June 2016

A neuron-based screening platform for optimizing genetically-encoded calcium indicators

scientific article

A platform for brain-wide imaging and reconstruction of individual neurons

scientific article published on 20 January 2016

A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale

scientific article (publication date: March 2009)

A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing

scientific article published on 25 March 2012

Activity in motor-sensory projections reveals distributed coding in somatosensation

scientific article

An orderly single-trial organization of population dynamics in premotor cortex predicts behavioral variability

scientific article published in Nature Communications

Author Correction: Kilohertz frame-rate two-photon tomography

scientific article published on 01 September 2019

Automated tracking of whiskers in videos of head fixed rodents

scientific article

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging

scientific article published on 01 August 2019

Circuits in the rodent brainstem that control whisking in concert with other orofacial motor actions

scientific article published on 23 August 2017

DIADEMchallenge.Org: A Compendium of Resources Fostering the Continuous Development of Automated Neuronal Reconstruction

Discrete attractor dynamics underlies persistent activity in the frontal cortex

scientific article published on 06 February 2019

Distinct descending motor cortex pathways and their roles in movement

scientific article published in Nature

Dynamic cues for whisker-based object localization: An analytical solution to vibration during active whisker touch.

scientific article published on 27 March 2018

Experience-dependent structural synaptic plasticity in the mammalian brain

scientific article (publication date: September 2009)

Flow of Information Underlying a Tactile Decision in Mice

Flow of cortical activity underlying a tactile decision in mice

scientific article

From cudgel to scalpel: toward precise neural control with optogenetics ⬇️

scientific article published on December 20, 2010

Functional clustering of dendritic activity during decision-making

scientific article published on 30 October 2019

Genetic Dissection of Neural Circuits: A Decade of Progress

scientific article published in April 2018

High-performance GFP-based calcium indicators for imaging activity in neuronal populations and microcompartments

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments

scientific article published on 17 June 2019

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators

scientific article

Kilohertz frame-rate two-photon tomography

scientific article published on 29 July 2019

Laminar analysis of excitatory local circuits in vibrissal motor and sensory cortical areas

scientific article

Layer 4 fast-spiking interneurons filter thalamocortical signals during active somatosensation

scientific article published on 17 October 2016

Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice

scientific article published on 7 April 2010

Long-range neuronal circuits underlying the interaction between sensory and motor cortex

scientific article

Maintenance of persistent activity in a frontal thalamocortical loop.

scientific article

Mechanisms underlying a thalamocortical transformation during active tactile sensation

scientific article

Multiple dynamic representations in the motor cortex during sensorimotor learning

scientific article

Multiple new site-specific recombinases for use in manipulating animal genomes

scientific article (publication date: 23 August 2011)

Myosin-dependent targeting of transmembrane proteins to neuronal dendrites

scientific article

Natural whisker-guided behavior by head-fixed mice in tactile virtual reality

scientific article

Neural Activity in Barrel Cortex Underlying Vibrissa-Based Object Localization in Mice

scientific article published on 01 September 2010

Neural coding during active somatosensation revealed using illusory touch

scientific article

Neural coding in barrel cortex during whisker-guided locomotion

scientific article published on 23 December 2015

Neural signatures of dynamic stimulus selection in Drosophila

scientific article published on 12 June 2017

Neurodata Without Borders: Creating a Common Data Format for Neurophysiology

scientific article

Nonlinear dendritic integration of sensory and motor input during an active sensing task

scientific article published on 11 November 2012

Optimization of a GCaMP Calcium Indicator for Neural Activity Imaging

scientific article

Organization of cortical and thalamic input to pyramidal neurons in mouse motor cortex

scientific article published on January 2013

Prediction of Choice from Competing Mechanosensory and Choice-Memory Cues during Active Tactile Decision Making

Principles Governing the Dynamics of GABAergic Interneurons in the Barrel Cortex

Procedures for behavioral experiments in head-fixed mice

scientific article

Rapid functional maturation of nascent dendritic spines

scientific article

Rapid mesoscale volumetric imaging of neural activity with synaptic resolution

scientific article published on 02 March 2020

Regular spiking and intrinsic bursting pyramidal cells show orthogonal forms of experience-dependent plasticity in layer V of barrel cortex

scientific article

Reverse engineering the mouse brain

scientific article published on October 2009

Robust neuronal dynamics in premotor cortex during motor planning

scientific article published on 13 April 2016

Sensitive red protein calcium indicators for imaging neural activity

scientific article published on 24 March 2016

Shared and distinct transcriptomic cell types across neocortical areas

scientific article published in Nature

Spatiotemporal constraints on optogenetic inactivation in cortical circuits

scientific article published on 18 November 2019

Structural plasticity underlies experience-dependent functional plasticity of cortical circuits

scientific article published on April 2010

Subcellular dynamics of type II PKA in neurons

scientific journal article

Tapered whiskers are required for active tactile sensation

scientific article

Thalamocortical input onto layer 5 pyramidal neurons measured using quantitative large-scale array tomography

scientific article

The Past, Present, and Future of Single Neuron Reconstruction ⬇️

scientific article published on September 1, 2011

The functional asymmetry of auditory cortex is reflected in the organization of local cortical circuits

scientific article

The functional properties of barrel cortex neurons projecting to the primary motor cortex

scientific article published in March 2010

The mechanical variables underlying object localization along the axis of the whisker

scientific article published on April 2013

The spread of Ras activity triggered by activation of a single dendritic spine

scientific article

The subcellular organization of neocortical excitatory connections

scientific article

Ultrasensitive fluorescent proteins for imaging neuronal activity

scientific article (publication date: 18 July 2013)

Vibrissa-based object localization in head-fixed mice

scientific article

List of works by Karel Svoboda

A Cre-dependent GCaMP3 reporter mouse for neuronal imaging in vivo

A Map of Anticipatory Activity in Mouse Motor Cortex

A cortico-cerebellar loop for motor planning

A genetically encoded fluorescent sensor of ERK activity

A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues

A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging

A neuron-based screening platform for optimizing genetically-encoded calcium indicators

A platform for brain-wide imaging and reconstruction of individual neurons

A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale

A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing

Activity in motor-sensory projections reveals distributed coding in somatosensation

An orderly single-trial organization of population dynamics in premotor cortex predicts behavioral variability

Author Correction: Kilohertz frame-rate two-photon tomography

Automated tracking of whiskers in videos of head fixed rodents

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging

Circuits in the rodent brainstem that control whisking in concert with other orofacial motor actions

DIADEMchallenge.Org: A Compendium of Resources Fostering the Continuous Development of Automated Neuronal Reconstruction

Discrete attractor dynamics underlies persistent activity in the frontal cortex

Distinct descending motor cortex pathways and their roles in movement

Dynamic cues for whisker-based object localization: An analytical solution to vibration during active whisker touch.

Experience-dependent structural synaptic plasticity in the mammalian brain

Flow of Information Underlying a Tactile Decision in Mice

Flow of cortical activity underlying a tactile decision in mice

From cudgel to scalpel: toward precise neural control with optogenetics ⬇️

Functional clustering of dendritic activity during decision-making

Genetic Dissection of Neural Circuits: A Decade of Progress

High-performance GFP-based calcium indicators for imaging activity in neuronal populations and microcompartments

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators

Kilohertz frame-rate two-photon tomography

Laminar analysis of excitatory local circuits in vibrissal motor and sensory cortical areas

Layer 4 fast-spiking interneurons filter thalamocortical signals during active somatosensation

Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice

Long-range neuronal circuits underlying the interaction between sensory and motor cortex

Maintenance of persistent activity in a frontal thalamocortical loop.

Mechanisms underlying a thalamocortical transformation during active tactile sensation

Multiple dynamic representations in the motor cortex during sensorimotor learning

Multiple new site-specific recombinases for use in manipulating animal genomes

Myosin-dependent targeting of transmembrane proteins to neuronal dendrites

Natural whisker-guided behavior by head-fixed mice in tactile virtual reality

Neural Activity in Barrel Cortex Underlying Vibrissa-Based Object Localization in Mice

Neural coding during active somatosensation revealed using illusory touch

Neural coding in barrel cortex during whisker-guided locomotion

Neural signatures of dynamic stimulus selection in Drosophila

Neurodata Without Borders: Creating a Common Data Format for Neurophysiology

Nonlinear dendritic integration of sensory and motor input during an active sensing task

Optimization of a GCaMP Calcium Indicator for Neural Activity Imaging

Organization of cortical and thalamic input to pyramidal neurons in mouse motor cortex

Prediction of Choice from Competing Mechanosensory and Choice-Memory Cues during Active Tactile Decision Making

Principles Governing the Dynamics of GABAergic Interneurons in the Barrel Cortex

Procedures for behavioral experiments in head-fixed mice

Rapid functional maturation of nascent dendritic spines

Rapid mesoscale volumetric imaging of neural activity with synaptic resolution

Regular spiking and intrinsic bursting pyramidal cells show orthogonal forms of experience-dependent plasticity in layer V of barrel cortex

Reverse engineering the mouse brain

Robust neuronal dynamics in premotor cortex during motor planning

Sensitive red protein calcium indicators for imaging neural activity

Shared and distinct transcriptomic cell types across neocortical areas

Spatiotemporal constraints on optogenetic inactivation in cortical circuits

Structural plasticity underlies experience-dependent functional plasticity of cortical circuits

Subcellular dynamics of type II PKA in neurons

Tapered whiskers are required for active tactile sensation

Thalamocortical input onto layer 5 pyramidal neurons measured using quantitative large-scale array tomography

The Past, Present, and Future of Single Neuron Reconstruction ⬇️

The functional asymmetry of auditory cortex is reflected in the organization of local cortical circuits

The functional properties of barrel cortex neurons projecting to the primary motor cortex

The mechanical variables underlying object localization along the axis of the whisker

The spread of Ras activity triggered by activation of a single dendritic spine

The subcellular organization of neocortical excitatory connections

Ultrasensitive fluorescent proteins for imaging neuronal activity

Vibrissa-based object localization in head-fixed mice