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List of works by Jacqueline Batley

"Doubled-haploid" allohexaploid Brassica lines lose fertility and viability and accumulate genetic variation due to genomic instability

scientific article published on 04 August 2019

A bi-filtering method for processing single nucleotide polymorphism array data improves the quality of genetic map and accuracy of quantitative trait locus mapping in doubled haploid populations of polyploid Brassica napus

scientific article published on 28 May 2015

A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies

scientific article published on 5 April 2014

A comparative map viewer integrating genetic maps for Brassica and Arabidopsis

scientific article

A comparative study of interspecies mating of Phratora vulgatissima and P. vitellinae using behavioural tests and molecular markers

A complex recombination pattern in the genome of allotetraploid Brassica napus as revealed by a high-density genetic map.

scientific article

A consensus map of rapeseed (Brassica napus L.) based on diversity array technology markers: applications in genetic dissection of qualitative and quantitative traits

scientific article

A differential k-mer analysis pipeline for comparing RNA-Seq transcriptome and meta-transcriptome datasets without a reference

scientific article published on 27 November 2018

A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome

scientific article

A high-throughput SNP array in the amphidiploid species Brassica napus shows diversity in resistance genes

scientific article

A reference genome for pea provides insight into legume genome evolution

scientific article published on 02 September 2019

A user guide to the Brassica 60K Illumina Infinium™ SNP genotyping array

scientific article published on 20 February 2017

A γ-lactamase from cereal infecting Fusarium spp. catalyses the first step in the degradation of the benzoxazolinone class of phytoalexins.

scientific article published on 18 August 2015

Accessing complex crop genomes with next-generation sequencing ⬇️

scientific article published on 05 September 2012

Advances in plant genotyping: where the future will take us.

scientific article published on January 2015

Amplification and Detection of Transposon Insertion Flanking Sequences Using Fluorescent MuAFLP

scientific article published on 01 May 2002

An advanced reference genome of Trifolium subterraneum L. reveals genes related to agronomic performance

scientific article published on 23 January 2017

An efficient approach to BAC based assembly of complex genomes

scientific article published on 20 January 2016

Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects

scientific article (publication date: 2015)

Assembly and comparison of two closely related Brassica napus genomes.

scientific article published on 12 April 2017

Assessing Variations in Host Resistance to Fusarium oxysporum f sp. cubense Race 4 in Musa Species, With a Focus on the Subtropical Race 4

scientific article published on 15 May 2019

Author Correction: Integration of metabolome and transcriptome reveals flavonoid accumulation in the intergeneric hybrid between Brassica rapa and Raphanus sativus

scientific article published on 22 July 2020

Author Correction: Plant pan-genomes are the new reference

scientific article published on 02 November 2020

AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants

scientific article published on 14 October 2008

Automated discovery of single nucleotide polymorphism and simple sequence repeat molecular genetic markers

scientific article published in January 2007

BASC: an integrated bioinformatics system for Brassica research

scientific article published on 5 December 2006

Bias in resistance gene prediction due to repeat masking

article

BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes

scientific article published in July 2016

Brassica 2016 – Phenomics to genomics and everything in between

Brassica ASTRA: an integrated database for Brassica genomic research

scientific article

CMap3D: a 3D visualization tool for comparative genetic maps

scientific article

Can genomics assist the phenological adaptation of canola to new and changing environments?

Capturing Wheat Phenotypes at the Genome Level

scientific article published in 2022

Capturing the biofuel wellhead and powerhouse: the chloroplast and mitochondrial genomes of the leguminous feedstock tree Pongamia pinnata

scientific article (publication date: 2012)

Centromere Locations in Brassica A and C Genomes Revealed Through Half-Tetrad Analysis

scientific article published on 27 November 2015

Characterization of disease resistance genes in the Brassica napus pangenome reveals significant structural variation

scientific article published on 10 October 2019

Characterization of simple sequence repeat markers derivedin silicofromBrassica rapabacterial artificial chromosome sequences and their application inBrassica napus

article

Characterization of the flanking regions of Zea mays microsatellites reveals a large number of useful sequence polymorphisms

scientific article

Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene

scientific article published on 11 April 2015

Comparison and evolutionary analysis of Brassica nucleotide binding site leucine rich repeat (NLR) genes and importance for disease resistance breeding

scientific article published on 11 November 2020

Comparison of transcription of multiple genes at three developmental stages of the plant pathogen Sclerotinia sclerotiorum

scientific article

Computational Identification and Comparative Analysis of miRNAs in Wheat Group 7 Chromosomes

article

Construction and comparison of three reference-quality genome assemblies for soybean

scientific article published on 28 October 2019

Copy number variation and disease resistance in plants

scientific article

Creating new interspecific hybrid and polyploid crops

scientific article published on 08 July 2015

CropSNPdb: a database of SNP array data for Brassica crops and hexaploid bread wheat

scientific article published on 28 January 2019

Current Status and Challenges in Identifying Disease Resistance Genes in Brassica napus

scientific article

Cytogenetic and Molecular Characterization of B-Genome Introgression Lines of Brassica napus L

scientific article

DEVELOPMENT OF HIGH THROUGHPUT SINGLE NUCLEOTIDE POLYMORPHISM GENOTYPING FOR THE ANALYSIS OFNODULARIA(CYANOBACTERIA) POPULATION GENETICS1

article published in 2003

DNA Methylation: Toward Crop Disease Resistance Improvement

scientific article published on 08 October 2019

Degradation of the benzoxazolinone class of phytoalexins is important for virulence of Fusarium pseudograminearum towards wheat.

scientific article published on 24 February 2015

Detection of Epistasis for Seed and Some Phytochemical Traits in Coriander under Different Irrigation Regimes

scientific article published in 2021

Discovering genetic polymorphisms in next-generation sequencing data

scientific article

Discovery of Single Nucleotide Polymorphisms in Complex Genomes Using SGSautoSNP.

scientific article published on 27 August 2012

Dispersion and domestication shaped the genome of bread wheat

scientific article published on 24 January 2013

Diversity of Phytosterols in Leaves of Wild Brassicaceae Species as Compared to Brassica napus Cultivars: Potential Traits for Insect Resistance and Abiotic Stress Tolerance

scientific article published in 2023

Draft Genome Assembly and Transcriptome Dataset for European Turnip (<i>Brassica rapa</i> L. ssp. <i>rapifera</i>), ECD4 Carrying Clubroot Resistance

publication published on 02 July 2021

Epigenetics: Potentials and Challenges in Crop Breeding

scientific article published on 18 September 2019

Evaluating Plant Gene Models Using Machine Learning

scientific article published in 2022

Extensive polyploid clonality was a successful strategy for seagrass to expand into a newly submerged environment

scientific article published on 01 June 2022

Frontiers in Dissecting and Managing <i>Brassica</i> Diseases: From Reference-Based RGA Candidate Identification to Building Pan-RGAomes

scientific article published on 25 November 2020

Future tools for association mapping in crop plants

scientific article

Gene loss in the fungal canola pathogen Leptosphaeria maculans

scientific article published on 25 November 2014

Genetic Mapping, Candidate Gene Identification and Marker Validation for Host Plant Resistance to the Race 4 of Fusarium oxysporum f. sp. cubense Using Musa acuminata ssp. malaccensis

scientific article published in 2023

Genetic and Molecular Regulation of Seed Storage Proteins (SSPs) to Improve Protein Nutritional Value of Oilseed Rape () Seeds

scientific article published in 2018

Genetic and physical mapping of flowering time loci in canola (Brassica napus L.)

scientific article published on 07 September 2012

Genetic diversity within populations of cyanobacteria assessed by analysis of single filaments

scientific article published in August 2002

Genetic map construction and QTL mapping of resistance to blackleg (Leptosphaeria maculans) disease in Australian canola (Brassica napus L.) cultivars.

scientific article published on 11 October 2009

Genetic maps and the use of synteny

Genome Analysis Identified Novel Candidate Genes for Ascochyta Blight Resistance in Chickpea Using Whole Genome Re-sequencing Data

scientific article

Genome sequence data: management, storage, and visualization

scientific article

Genome sequencing approaches and successes

scientific article published on January 2009

Genome wide analysis of flowering time trait in multiple environments via high-throughput genotyping technique in Brassica napus L

scientific article published on 19 March 2015

Genome-Wide Analysis of the Lateral Organ Boundaries Domain Gene Family in Brassica Napus

scientific article published on 06 March 2020

Genome-Wide Association Study of Genetic Control of Seed Fatty Acid Biosynthesis in Brassica napus

scientific article published on January 2016

Genome-Wide Identification and Evolution of Receptor-Like Kinases (RLKs) and Receptor like Proteins (RLPs) in <i>Brassica juncea</i>

scientific article published on 30 December 2020

Genome-wide Association Study Identifies New Loci for Resistance to Leptosphaeria maculans in Canola

scientific article published on 24 October 2016

Genome-wide delineation of natural variation for pod shatter resistance in Brassica napus

scientific article

Genome-wide identification and comparative analysis of NBS-LRR resistance genes in Brassica napus

article

Genome-wide survey of the seagrass Zostera muelleri suggests modification of the ethylene signalling network.

scientific article

Genomic advances will herald new insights into the Brassica: Leptosphaeria maculans pathosystem

scientific article published on 25 May 2011

Genomic comparison of two independent seagrass lineages reveals habitat-driven convergent evolution.

scientific article published in June 2018

Genomic selection and genetic architecture of agronomic traits during modern rapeseed breeding

scientific article published in 2022

Genoproteomics-assisted improvement of Andrographis paniculata: toward a promising molecular and conventional breeding platform for autogamous plants affecting the pharmaceutical industry

scientific article published on 3 January 2017

Genotype–Environment mismatch of kelp forests under climate change

scientific article published in 2021

Genotyping by sequencing approaches to characterise crop genomes: choosing the right tool for the right application

scientific article

Germin-like protein 2 gene promoter from rice is responsive to fungal pathogens in transgenic potato plants

scientific article published on 16 August 2015

Global agricultural intensification during climate change: a role for genomics

scientific article published in April 2016

Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003

scientific article published on 09 February 2022

High-resolution molecular karyotyping uncovers pairing between ancestrally related Brassica chromosomes

scientific article published on 28 January 2014

High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus

scientific article published on 10 March 2015

High-throughput FACS-based mutant screen identifies a gain-of-function allele of the Fusarium graminearum adenylyl cyclase causing deoxynivalenol over-production

scientific article

High-throughput genotyping for species identification and diversity assessment in germplasm collections

scientific article published on 31 January 2015

Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus

scientific article published on 10 January 2018

INTEGRATING AND INTERROGATING DIVERSE BRASSICA DATA WITHIN AN ENSEMBL STRUCTURED DATABASE

INTRASPECIFIC GENETIC DIVERSITY IN THE MARINE COCCOLITHOPHORE EMILIANIA HUXLEYI (PRYMNESIOPHYCEAE): THE USE OF MICROSATELLITE ANALYSIS IN MARINE PHYTOPLANKTON POPULATION STUDIES1

scholarly article by Maria Debora Iglesias-Rodriguez et al published June 2006 in Journal of Phycology

Identification and QTL mapping of resistance to Turnip yellows virus (TuYV) in oilseed rape, Brassica napus

scientific article published on 05 November 2019

Identification and characterization of candidate Rlm4 blackleg resistance genes in Brassica napus using next-generation sequencing

scientific article

Identification and characterization of more than 4 million intervarietal SNPs across the group 7 chromosomes of bread wheat

scientific article published on 22 August 2014

Identification and characterization of simple sequence repeat (SSR) markers derived in silico from Brassica oleracea genome shotgun sequences

article

Identification and characterization of simple sequence repeat (SSR) markers from Fragaria x ananassa expressed sequences

article

Identification and characterization of simple sequence repeat markers from Brassica napus expressed sequences

article

Identification of Putative Candidate Genes for Water Stress Tolerance in Canola (Brassica napus).

scientific article

Identifying genetic diversity of avirulence genes in Leptosphaeria maculans using whole genome sequencing

article

Improvements in Genomic Technologies: Application to Crop Genomics

scientific article published on 8 March 2017

Inherited allelic variants and novel karyotype changes influence fertility and genome stability in Brassica allohexaploids

scientific article published on 24 April 2019

Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies

scientific article published in January 2019

Integration of metabolome and transcriptome reveals flavonoid accumulation in the intergeneric hybrid between Brassica rapa and Raphanus sativus

scientific article published on 04 December 2019

Investigating Drought Tolerance in Chickpea Using Genome-Wide Association Mapping and Genomic Selection Based on Whole-Genome Resequencing Data.

scientific article published on 19 February 2018

Investigating the diversity of effector genes in the banana pathogen, Fusarium oxysporum f.sp. cubense, reveals evidence of horizontal gene transfer

scientific article published on 12 August 2017

Machine learning models outperform deep learning models, provide interpretation and facilitate feature selection for soybean trait prediction

scientific article published on 08 April 2022

Mapping QTLs of resistance to head splitting in cabbage (Brassica oleracea L.var. capitata L.)

Microsatellite cross-amplification in coccolithophores: application in population diversity studies

scientific article published on 01 December 2006

Microspore culture reveals complex meiotic behaviour in a trigenomic Brassica hybrid

scientific article published on 8 July 2015

Mining for SNPs and SSRs using SNPServer, dbSNP and SSR taxonomy tree

scientific article

Mining for single nucleotide polymorphisms and insertions/deletions in maize expressed sequence tag data

scientific article

Molecular Genetic Markers: Discovery, Applications, Data Storage and Visualisation

Molecular Marker Discovery and Genetic Map Visualisation

scholarly article published 2009

Molecular breeding for resistance to black rot [Xanthomonas campestris pv. campestris (Pammel) Dowson] in Brassicas: recent advances

Molecular mapping of qualitative and quantitative loci for resistance to Leptosphaeria maculans causing blackleg disease in canola (Brassica napus L.).

scientific article published on 28 March 2012

Molecular marker applications in plants

scientific article

Molecular-cytogenetic characterization of C-genome chromosome substitution lines in Brassica juncea (L.) Czern and Coss

scientific article published on 25 February 2016

Neodiversification of homeologous CLAVATA1-like receptor kinase genes in soybean leads to distinct developmental outcomes

scientific article published on 21 August 2017

New computational tools for brassica genome research

scientific article published on January 2004

New technologies for ultra-high throughput genotyping in plants

scientific article

New technologies for ultrahigh-throughput genotyping in plant taxonomy

scientific article published in January 2014

Next Generation Sequencing and Germplasm Resources

scientific article published on 7 November 2013

Next generation characterisation of cereal genomes for marker discovery

scientific article published on 25 November 2013

Next-generation genome sequencing can be used to rapidly characterise sequences flanking T-DNA insertions in random insertional mutants of Leptosphaeria maculans

scientific article published on 7 December 2014

Pangenomics Comes of Age: From Bacteria to Plant and Animal Applications

scientific article published on 24 December 2019

Pangenomics and Crop Genome Adaptation in a Changing Climate

scientific article published in 2022

Plant bioinformatics: from genome to phenome

scientific article published on May 2004

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

scientific article published on 21 August 2014

Plant genome sequencing: applications for crop improvement

scientific article

Plant pan-genomes are the new reference

scientific article published on 20 July 2020

Polymorphic microsatellite loci in global populations of the marine coccolithophorid Emiliania huxleyi

scientific article published in 2002

Population Diversity of Leptosphaeria maculans in Australia

article

Population structure of the beetle pests Phyllodecta vulgatissima and P. vitellinae on UK willow plantations

scientific article published in August 2004

Predicting Cloned Disease Resistance Gene Homologs (CDRHs) in Radish, Underutilised Oilseeds, and Wild Brassicaceae Species ⬇️

scientific article published on 8 November 2022

Predicting polymorphic EST-SSRs in silico

scientific article published on 11 February 2013

Prioritization of candidate genes in "QTL-hotspot" region for drought tolerance in chickpea (Cicer arietinum L.).

scientific article published on 19 October 2015

QTL Genetic Mapping Study for Traits Affecting Meal Quality in Winter Oilseed Rape (Brassica Napus L.)

scientific article published in 2021

Quantitative Trait Loci for Heat Stress Tolerance in Brassica rapa L. Are Distributed across the Genome and Occur in Diverse Genetic Groups, Flowering Phenologies and Morphotypes

scientific article published in 2022

Quantitative Trait Locus Mapping of Resistance to Turnip Yellows Virus in <i>Brassica rapa</i> and <i>Brassica oleracea</i> and Introgression of These Resistances by Resynthesis Into Allotetraploid Plants for Deployment in <i>Brassica napus</i>

scientific article published on 10 December 2021

RNA-Seq and metabolic flux analysis of Tetraselmis sp. M8 during nitrogen starvation reveals a two-stage lipid accumulation mechanism.

scientific article published on 6 June 2017

Rapid divergence of repetitive DNAs in Brassica relatives

scientific article published on 13 December 2010

Recent Findings Unravel Genes and Genetic Factors Underlying <i>Leptosphaeria maculans</i> Resistance in <i>Brassica napus</i> and Its Relatives

scientific article published on 30 December 2020

Redundancy based detection of sequence polymorphisms in expressed sequence tag data using autoSNP.

scientific article

Regulation of a novel Fusarium cytokinin in Fusarium pseudograminearum

scientific article published on 07 January 2019

Revolution in Genotyping Platforms for Crop Improvement.

scientific article

SNP analysis ofMacadamia integrifoliachloroplast genomes to determine the genetic structure of wild populations

SNP discovery and applications in Brassica napus

SNP markers-based map construction and genome-wide linkage analysis in Brassica napus

article

SNPServer: a real-time SNP discovery tool

scientific article

SSRPrimer and SSR Taxonomy Tree: Biome SSR discovery

scientific article published on July 2006

Scanning the effects of ethyl methanesulfonate on the whole genome of Lotus japonicus using second-generation sequencing analysis

scientific article

Second-generation sequencing for gene discovery in the Brassicaceae

scientific article published in August 2012

Segregation for fertility and meiotic stability in novel Brassica allohexaploids

scientific article published on 17 January 2017

Sequence and structure of Brassica rapa chromosome A3

scientific article

Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS.

scientific article

Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation

scientific article

Shifting the limits in wheat research and breeding using a fully annotated reference genome

scientific article

Simple sequence repeat marker loci discovery using SSR primer

scientific article published on 12 February 2004

Single nucleotide polymorphism discovery from wheat next-generation sequence data.

scientific article

Single nucleotide polymorphism discovery in barley using autoSNPdb

scientific article

Sixteen new simple sequence repeat markers fromBrassica junceaexpressed sequences and their cross-species amplification

article

Speed breeding is a powerful tool to accelerate crop research and breeding

scientific article

Studying the Genetic Diversity of Yam Bean Using a New Draft Genome Assembly

scientific article published in 2021

Systematic trait dissection in oilseed rape provides a comprehensive view, further insight, and exact roadmap for yield determination

scientific article published on 19 April 2022

Targeted identification of genomic regions using TAGdb

scientific article

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

scientific article

The Fdb3 transcription factor of the Fusarium Detoxification of Benzoxazolinone gene cluster is required for MBOA but not BOA degradation in Fusarium pseudograminearum

scientific article published on 29 January 2016

The Genome of a Southern Hemisphere Seagrass Species (Zostera muelleri).

scientific article published on 3 July 2016

The Use of Genetic and Gene Technologies in Shaping Modern Rapeseed Cultivars (Brassica napus L.).

scientific article published on 30 September 2020

The application of genomics and bioinformatics to accelerate crop improvement in a changing climate

scientific article

The development of multiplex simple sequence repeat (SSR) markers to complement distinctness, uniformity and stability testing of rape (Brassica napus L.) varieties

scientific article published on 22 October 2002

The fate of chromosomes and alleles in an allohexaploid Brassica population

scientific article

The genome of the mesopolyploid crop species Brassica rapa ⬇️

scientific article (publication date: 28 August 2011)

The loss of vernalization requirement in narrow-leafed lupin is associated with a deletion in the promoter and de-repressed expression of a Flowering Locus T (FT) homologue

scientific article published on 15 July 2016

The pangenome of an agronomically important crop plant Brassica oleracea

scientific article published on 11 November 2016

The pangenome of hexaploid bread wheat

scientific article

The reference genetic linkage map for the multinational Brassica rapa genome sequencing project

scientific article published on 24 July 2007

Towards CRISPR/Cas crops - bringing together genomics and genome editing.

scientific article

Towards plant pangenomics

scientific article

Trait associations in the pangenome of pigeon pea (Cajanus cajan)

scientific article published on 05 February 2020

Transcriptome Profiling of the Shoot and Root Tips of S562L, a Soybean GmCLAVATA1A Mutant

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

scientific article

Transcriptomic comparison between developing seeds of yellow- and black-seeded Brassica napus reveals that genes influence seed quality

article

Two independent approaches converge to the cloning of a new Leptosphaeria maculans avirulence effector gene, AvrLmS-Lep2

scientific article published on 03 March 2022

Type B Heterotrimeric G Protein γ-Subunit Regulates Auxin and ABA Signaling in Tomato.

scientific article published on 14 December 2015

Understanding Host-Pathogen Interactions in Brassica napus in the Omics Era

scientific article published on 10 October 2020

Variation in abundance of predicted resistance genes in the Brassica oleracea pangenome

scientific article published on 31 May 2018

Wheat Panache: A pangenome graph database representing presence–absence variation across sixteen bread wheat genomes

scientific article published in 2022

Whole Genome Diversity, Population Structure, and Linkage Disequilibrium Analysis of Chickpea (Cicer arietinum L.) Genotypes Using Genome-Wide DArTseq-Based SNP Markers

scientific article published on 04 September 2019

Wild Origins of Macadamia Domestication Identified Through Intraspecific Chloroplast Genome Sequencing

scientific article published on 21 March 2019

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