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List of works by Paul Keim

A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens

scientific article

A Decade of Plague in Mahajanga, Madagascar: Insights into the Global Maritime Spread of Pandemic Plague ⬇️

scientific article published on February 12, 2013

A North American Yersinia pestis draft genome sequence: SNPs and phylogenetic analysis

scientific article

A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence

scientific article

A global to local genomics analysis of Clostridioides difficile ST1/RT027 identifies cryptic transmission events in a northern Arizona healthcare network

scientific article published on 20 May 2019

A horizontal gene transfer event defines two distinct groups within Burkholderia pseudomallei that have dissimilar geographic distributions

scientific article

A review of methods for subtyping Yersinia pestis: From phenotypes to whole genome sequencing

scientific article

A single introduction of Yersinia pestis to Brazil during the 3rd plague pandemic

scientific article published in PLoS ONE

AOAC SMPR 2016.010.

scientific article published on January 2017

Accurate and rapid identification of the Burkholderia pseudomallei near-neighbour, Burkholderia ubonensis, using real-time PCR

scientific article

African Lineage Brucella melitensis Isolates from Omani Livestock.

scientific article published in January 2017

An Objective Approach for Burkholderia pseudomallei Strain Selection as Challenge Material for Medical Countermeasures Efficacy Testing ⬇️

scientific article published on September 26, 2012

An attenuated strain of Bacillus anthracis (CDC 684) has a large chromosomal inversion and altered growth kinetics

scientific article

An outbreak of respiratory tularemia caused by diverse clones of Francisella tularensis

scientific article

Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales

scientific article published in September 2004

Anthrax, but not Bacillus anthracis?

scientific article published in November 2006

Antibiotic susceptibility and molecular diversity of Bacillus anthracis strains in Chad: detection of a new phylogenetic subgroup

scientific article

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019

Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation

scientific article

Bacillus anthracis in China and its relationship to worldwide lineages

scientific article

Bacillus anthracis incident, Kameido, Tokyo, 1993.

scientific article published in January 2004

Best practices for evaluating single nucleotide variant calling methods for microbial genomics

scientific article (publication date: 2015)

Biodefense research: a win-win challenge

scientific article published on 01 December 2008

BurkDiff: a real-time PCR allelic discrimination assay for Burkholderia pseudomallei and B. mallei

scientific article

Burkholderia humptydooensis sp. nov., a new species related to Burkholderia thailandensis and the fifth member of the pseudomallei complex

scientific article

Burkholderia pseudomallei distribution in Australasia is linked to paleogeographic and anthropogenic history

scientific article published in PLoS ONE

Burkholderia pseudomallei isolates from Sarawak, Malaysian Borneo, are predominantly susceptible to aminoglycosides and macrolides

scientific article

Burkholderia pseudomallei, the causative agent of melioidosis, is rare but ecologically established and widely dispersed in the environment in Puerto Rico

scientific article published on 05 September 2019

Burkholderia stagnalis sp. nov. and Burkholderia territorii sp. nov., two novel Burkholderia cepacia complex species from environmental and human sources

scientific article

Castor bean organelle genome sequencing and worldwide genetic diversity analysis

scientific article published on 7 July 2011

Characterization of Microsatellites in Pseudogymnoascus destructans for White-nose Syndrome Genetic Analysis

scientific article published on 5 May 2017

Characterization of a Bacillus anthracis isolate causing a rare case of fatal anthrax in a 2-year-old boy from Hong Kong.

scientific article published on April 2005

Characterization of ceftazidime resistance mechanisms in clinical isolates of Burkholderia pseudomallei from Australia

scientific article

Community analysis of chronic wound bacteria using 16S rRNA gene-based pyrosequencing: impact of diabetes and antibiotics on chronic wound microbiota

scientific article

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage

scientific article

Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis

scientific article

Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis

scientific article (publication date: 14 June 2002)

Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

scientific article

Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies

scientific article

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

scientific article

Comparative phylogenomics and evolution of the Brucellae reveal a path to virulence

scientific article published on 13 December 2013

Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens

scientific article

Comparison of two multiple-locus variable-number tandem-repeat analysis methods for molecular strain typing of human Brucella melitensis isolates from the Middle East

scientific article published on 13 May 2009

Complete Genome Sequence of the Encephalomyelitic Burkholderia pseudomallei Strain MSHR305

scientific article published on 22 August 2013

Complete Genome Sequence of the Environmental Burkholderia pseudomallei Sequence Type 131 Isolate MSHR1435, Associated with a Chronic Melioidosis Infection

scientific article published on 15 March 2018

Complete Genome Sequence of the Epidemic and Highly Virulent CTX-M-15-Producing H30-Rx Subclone of Escherichia coli ST131.

scientific article published on 5 December 2013

Complete genomic characterization of a pathogenic A.II strain of Francisella tularensis subspecies tularensis

scientific article

Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements

scientific article

Correction for Johnson et al., Complete Genome Sequences for 59 Burkholderia Isolates, Both Pathogenic and Near Neighbor

scientific article published on 21 April 2016

Correction: Pre-Columbian Origins for North American Anthrax.

scientific article published on 20 May 2009

Cost-effective interrogation of single nucleotide polymorphisms using the mismatch amplification mutation assay and capillary electrophoresis

scientific article published on December 2010

Cryptococcus gattii in North American Pacific Northwest: whole-population genome analysis provides insights into species evolution and dispersal

scientific article

Cyclopropavir inhibits the normal function of the human cytomegalovirus UL97 kinase.

scientific article

Defining the Pandemic at the State Level: Sequence-Based Epidemiology of the SARS-CoV-2 virus by the Arizona COVID-19 Genomics Union (ACGU)

scientific article published on 13 May 2020

Detection of Burkholderia pseudomallei O-antigen serotypes in near-neighbor species

scientific article

Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing

scientific article

Detection of diverse new Francisella-like bacteria in environmental samples

scientific article

Developing Inclusivity and Exclusivity Panels for Testing Diagnostic and Detection Tools Targeting Burkholderia pseudomallei, the Causative Agent of Melioidosis

scientific article published on 20 April 2018

Development and validation of Burkholderia pseudomallei-specific real-time PCR assays for clinical, environmental or forensic detection applications

scientific article

Development of Immunoassays for Burkholderia pseudomallei Typical and Atypical Lipopolysaccharide Strain Typing

scientific article published on 19 December 2016

Development of a rapid, cost-effective TaqMan Real-Time PCR Assay for identification and differentiation of Coccidioides immitis and Coccidioides posadasii

scientific article published in May 2010

Development of a rapid, cost-effective TaqMan Real-Time PCR Assay for identification and differentiation of Coccidioides immitis and Coccidioides posadasii

article

Development of ceftazidime resistance in an acute Burkholderia pseudomallei infection

scientific article published on 22 August 2012

Differential plague-transmission dynamics determine Yersinia pestis population genetic structure on local, regional, and global scales

scholarly article

Diverse Burkholderia Species Isolated from Soils in the Southern United States with No Evidence of B. pseudomallei

scientific article published on 23 November 2015

Diverse Francisella tularensis strains and oropharyngeal tularemia, Turkey

scientific article published in January 2015

Diverse Genotypes of Yersinia pestis Caused Plague in Madagascar in 2007

scientific article published on 12 June 2015

Diversity among French Bacillus anthracis isolates

scientific article

Diversity of 16S-23S rDNA internal transcribed spacer (ITS) reveals phylogenetic relationships in Burkholderia pseudomallei and its near-neighbors

scientific article

Diversity of Francisella tularensis subsp. holarctica lineages, China

scientific article

Domestic canines do not display evidence of gut microbial dysbiosis in the presence of Clostridioides (Clostridium) difficile, despite cellular susceptibility to its toxins

scientific article published on 01 April 2019

Dominance of multidrug resistant CC271 clones in macrolide-resistant streptococcus pneumoniae in Arizona.

scientific article

Draft Genome Sequences of Two Bulgarian Bacillus anthracis Strains

scientific article

Effect of repeat copy number on variable-number tandem repeat mutations in Escherichia coli O157:H7.

scientific article published on June 2006

Effective Disinfectants for Coccidioides immitis and C. posadasii

scientific article published on January 2015

Effects of binge alcohol exposure on Burkholderia thailandensis-alveolar macrophage interaction.

scientific article

Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus

scientific article

Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus

Epidemiological tracking and population assignment of the non-clonal bacterium, Burkholderia pseudomallei

scientific article

Epidemiology and investigation of melioidosis, Southern Arizona

scientific article

Estimated herd prevalence and sequence types of Coxiella burnetii in bulk tank milk samples from commercial dairies in Indiana

scientific article published on 7 August 2015

Evaluating the long-term persistence of Bacillus spores on common surfaces.

scientific article published on 3 May 2018

Evolution of a pathogen: a comparative genomics analysis identifies a genetic pathway to pathogenesis in Acinetobacter

scientific article

False detection of Coxiella burnetii-what is the risk?

scientific article published on 7 April 2016

Feral swine brucellosis in the United States and prospective genomic techniques for disease epidemiology.

scientific article published on 15 March 2013

Fine-scale genetic diversity among Burkholderia pseudomallei soil isolates in northeast Thailand

scientific article

First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ.

scientific article published on 18 October 2017

Fluorescent amplified fragment length polymorphism analysis of Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis isolates

scientific article

Francisella tularensis in the United States

scientific article

Francisella tularensis subsp. novicida isolated from a human in Arizona

scientific article

Francisella tularensis subsp. tularensis group A.I, United States

scientific article

Genome Sequence of Bacillus anthracis STI, a Sterne-Like Georgian/Soviet Vaccine Strain

scientific article

Genome Sequence of Burkholderia pseudomallei NCTC 13392.

scientific article published on 23 May 2013

Genome Sequence of Staphylococcus aureus Strain CA-347, a USA600 Methicillin-Resistant Isolate

scientific article published on 25 July 2013

Genome sequence of "Candidatus Microthrix parvicella" Bio17-1, a long-chain-fatty-acid-accumulating filamentous actinobacterium from a biological wastewater treatment plant.

scientific article

Genomic Analysis of the Emergence and Rapid Global Dissemination of the Clonal Group 258 Klebsiella pneumoniae Pandemic

scientific article

Genomic characterization of Burkholderia pseudomallei isolates selected for medical countermeasures testing: comparative genomics associated with differential virulence

scientific article

Genomic characterization of Parengyodontium americanum sp. nov

scientific article published on 03 February 2020

Genomic characterization of newly completed genomes of botulinum neurotoxin-producing species from Argentina, Australia and Africa

scientific article published on 27 February 2020

Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic.

scientific article

Genomic islands from five strains of Burkholderia pseudomallei

scientific article

Genotyping and Axenic Growth of Coxiella burnetii Isolates Found in the United States Environment

scientific article

Genotyping of Brucella species using clade specific SNPs

scientific article

Genotyping of Burkholderia mallei from an outbreak of glanders in Bahrain suggests multiple introduction events ⬇️

scientific article

Genotyping of Coxiella burnetii from domestic ruminants and human in Hungary: indication of various genotypes

scientific article

Global and regional dissemination and evolution of Burkholderia pseudomallei

scientific article published on 23 January 2017

Global genetic population structure of Bacillus anthracis

scientific article

High Leptospira Diversity in Animals and Humans Complicates the Search for Common Reservoirs of Human Disease in Rural Ecuador

scientific article

High prevalence and two dominant host-specific genotypes of Coxiella burnetii in U.S. milk

scientific article

High-throughput extraction of arthropod vector and pathogen DNA using bead milling

scientific article published on November 2004

Highly sensitive quantitative PCR for the detection and differentiation of Pseudogymnoascus destructans and other Pseudogymnoascus species.

scientific article published on 27 December 2013

Historical distribution and molecular diversity of Bacillus anthracis, Kazakhstan ⬇️

scientific article

Humans and evolutionary and ecological forces shaped the phylogeography of recently emerged diseases

scientific article published on 12 October 2009

Hypervirulent emm59 Clone in Invasive Group A Streptococcus Outbreak, Southwestern United States

scientific article published on April 2016

Identification of Burkholderia pseudomallei Near-Neighbor Species in the Northern Territory of Australia

scientific article published on 29 June 2015

Identification of melioidosis outbreak by multilocus variable number tandem repeat analysis

scientific article published on February 2009

Identifying Sources of Human Exposure to Plague.

scientific article published in April 2005

Identifying experimental surrogates for Bacillus anthracis spores: a review ⬇️

scientific article published on September 1, 2010

In vitro selection and characterization of Bacillus anthracis mutants with high-level resistance to ciprofloxacin

scientific article

In vitro system for modeling influenza A virus resistance under drug pressure

scientific article

Injectional anthrax in heroin users, Europe, 2000-2012.

scientific article published on February 2014

Insights to genetic characterization tools for epidemiological tracking of Francisella tularensis in Sweden

scientific article

Integrating Genome-based Informatics to Modernize Global Disease Monitoring, Information Sharing, and Response ⬇️

scientific article published on November 1, 2012

Interactions between the yeast Ogataea pini and filamentous fungi associated with the western pine beetle.

scientific article

Investigation of Yersinia pestis Laboratory Adaptation through a Combined Genomics and Proteomics Approach

scientific article

KlebSeq, a Diagnostic Tool for Surveillance, Detection, and Monitoring of Klebsiella pneumoniae

scientific article published on 10 August 2016

Knockout and pullout recombineering for naturally transformable Burkholderia thailandensis and Burkholderia pseudomallei ⬇️

scientific article published on July 7, 2011

Leptospira in river and soil in a highly endemic area of Ecuador

scientific article published on 07 January 2021

Linking soil bacterial biodiversity and soil carbon stability

scientific article

Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever

scientific article

Long-range dispersal moved Francisella tularensis into Western Europe from the East.

scientific article published on 12 December 2016

Low cost, low tech SNP genotyping tools for resource-limited areas: Plague in Madagascar as a model

scientific article

Macroscale spatial variation in chronic wound microbiota: a cross-sectional study

scientific article

Male circumcision significantly reduces prevalence and load of genital anaerobic bacteria

scientific article

Mapping and comparing bacterial microbiota in the sinonasal cavity of healthy, allergic rhinitis, and chronic rhinosinusitis subjects.

scientific article

Mapping the Evolution of Hypervirulent Klebsiella pneumoniae

scientific article published on 21 July 2015

Mass spectrometry provides accurate characterization of two genetic marker types in Bacillus anthracis

scientific article published on October 2004

Massive dispersal of Coxiella burnetii among cattle across the United States

scientific article published on 25 August 2016

Medical therapy reduces microbiota diversity and evenness in surgically recalcitrant chronic rhinosinusitis.

scientific article

Melt analysis of mismatch amplification mutation assays (Melt-MAMA): a functional study of a cost-effective SNP genotyping assay in bacterial models

scientific article published in 2012

Meta-analysis to estimate the load of Leptospira excreted in urine: beyond rats as important sources of transmission in low-income rural communities

scientific article

MetaGeniE: characterizing human clinical samples using deep metagenomic sequencing

scientific article

Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant

scientific article

Microbial forensics: DNA fingerprinting of Bacillus anthracis (anthrax).

scientific article published on July 2008

Microevolution and history of the plague bacillus, Yersinia pestis

scientific article published on 21 December 2004

Molecular analysis of rifampin resistance in Bacillus anthracis and Bacillus cereus

scientific article

Molecular basis of rare aminoglycoside susceptibility and pathogenesis of Burkholderia pseudomallei clinical isolates from Thailand ⬇️

scientific article published in 2009

Molecular characterization of clinical Burkholderia pseudomallei isolates from India

scientific article

Molecular diversity of Bacillus anthracis in Italy

scientific article

Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe

scientific article

Molecular epidemiology of anthrax cases associated with recreational use of animal hides and yarn in the United States

scientific article

Molecular epidemiology of glanders, Pakistan

scientific article

Molecular epidemiology, evolution, and ecology of Francisella

scientific article published on 13 April 2007

Molecular evolutionary consequences of niche restriction in Francisella tularensis, a facultative intracellular pathogen

scientific article published on 12 June 2009

Molecular genotyping of Acinetobacter spp. isolated in Arizona, USA, using multilocus PCR and mass spectrometry.

scientific article published on 5 June 2013

Molecular investigations of a locally acquired case of melioidosis in Southern AZ, USA

scientific article

Molecular phylogeny of Burkholderia pseudomallei from a remote region of Papua New Guinea

scientific article

Molecular typing of Mycobacterium tuberculosis by using nine novel variable-number tandem repeats across the Beijing family and low-copy-number IS6110 isolates

scientific article published in September 2003

More than 50% of Clostridium difficile Isolates from Pet Dogs in Flagstaff, USA, Carry Toxigenic Genotypes

scientific article

Multidrug-Resistant Staphylococcus aureus in US Meat and Poultry

scientific article

Multiple phylogenetically-diverse, differentially-virulent Burkholderia pseudomallei isolated from a single soil sample collected in Thailand

scientific article published on 10 February 2022

Mutations, mutation rates, and evolution at the hypervariable VNTR loci of Yersinia pestis

scientific article published on 11 December 2006

NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats.

scientific article published on 25 August 2016

Next-Generation Sequencing of Coccidioides immitis Isolated during Cluster Investigation ⬇️

scientific article published on February 1, 2011

No resistance plasmid in Yersinia pestis, North America.

scientific article published on May 2010

Out of the ground: aerial and exotic habitats of the melioidosis bacterium Burkholderia pseudomallei in grasses in Australia ⬇️

scientific article published on December 19, 2011

Pangenome Analysis of Burkholderia pseudomallei: Genome Evolution Preserves Gene Order despite High Recombination Rates

scientific article published on 20 October 2015

Pathogenomic Sequence Analysis of and Isolates Closely Related to

scientific article published in November 2006

Pathogenomic Sequence Analysis of Bacillus cereus and Bacillus thuringiensis Isolates Closely Related to Bacillus anthracis

scientific article

Penile Microbiota and Female Partner Bacterial Vaginosis in Rakai, Uganda

scientific article published on 16 June 2015

Performance Standards for Biological Threat Agent Assays for Department of Defense Applications

scientific article published on 01 November 2018

Persistence of Burkholderia thailandensis E264 in lung tissue after a single binge alcohol episode

scientific article published on 10 December 2019

Persistence of category A select agents in the environment

scientific article

Phenotypic and functional characterization of Bacillus anthracis biofilms

scientific article published in June 2007

Phylogenetic Analysis of Francisella tularensis Group A.II Isolates from 5 Patients with Tularemia, Arizona, USA, 2015-2017

scholarly article by Dawn N Birdsell et al published May 2019 in Emerging Infectious Diseases

Phylogenetic analysis of West Nile Virus in Maricopa County, Arizona: Evidence for dynamic behavior of strains in two major lineages in the American Southwest

scientific article published in PLoS ONE

Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing

scholarly article

Phylogenetic understanding of clonal populations in an era of whole genome sequencing

scientific article published on 27 May 2009

Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data.

scientific article

Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer

scientific article

Phylogeographic, genomic, and meropenem susceptibility analysis of Burkholderia ubonensis

scientific article published on 14 September 2017

Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar

scientific article published on 13 September 2011

Phylogeography of Bacillus anthracis in the country of Georgia shows evidence of population structuring and is dissimilar to other regional genotypes

scientific article

Phylogeography of Francisella tularensis subsp. holarctica, Europe

scientific article published on February 2012

Phylogeography of Francisella tularensis subspecies holarctica from the country of Georgia

scientific article

Phylogeography of Francisella tularensis: global expansion of a highly fit clone

scientific article published on 27 February 2009

Policy: Adaptations of avian flu virus are a cause for concern

scientific article published on 31 January 2012

Population differences in host immune factors may influence survival of Gunnison's prairie dogs (Cynomys gunnisoni) during plague outbreaks

scientific article published on October 2011

Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak

scientific article

Pre-Columbian origins for North American anthrax

scientific article

Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague

scientific article

Proteomic analysis of four Clostridium botulinum strains identifies proteins that link biological responses to proteomic signatures

scientific article published in PLoS ONE

Public health and biosecurity. Adaptations of avian flu virus are a cause for concern

scientific article published on 31 January 2012

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Rapid and robust phylotyping of spa t003, a dominant MRSA clone in Luxembourg and other European countries

scientific article

Rapid quantification of single-nucleotide mutations in mixed influenza A viral populations using allele-specific mixture analysis

scientific article

Rapid typing of Coxiella burnetii

scientific article

Real-Time PCR Assays of Single-Nucleotide Polymorphisms Defining the Major Clades

scientific article published in July 2008

Real-time PCR assays for genotyping of Cryptococcus gattii in North America

scientific article

Real-time PCR assays of single-nucleotide polymorphisms defining the major Brucella clades

scientific article

Redaction of sensitive data in the publication of dual use research of concern

scientific article published on 31 December 2013

Redefining the differences in gene content between Yersinia pestis and Yersinia pseudotuberculosis using large-scale comparative genomics

scientific article published on 03 August 2015

Reply to "South Asia instead of Nepal may be the origin of the Haitian cholera outbreak strain".

scientific article published on November 2011

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 August 2019

Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity

scientific article published on 28 October 2020

Selective isolation of Yersinia pestis from plague-infected fleas

scientific article published on 10 April 2010

Single nucleotide polymorphism typing of Bacillus anthracis from Sverdlovsk tissue

scientific article published on April 2008

Single nucleotide polymorphisms for assessing genetic diversity in castor bean (Ricinus communis).

scientific article published on 18 January 2010

Spatial analysis and identification of high risk plague regions in Pakistan based on associated rodent species distribution

scientific article

Specific detection of bacillus anthracis using a TaqMan mismatch amplification mutation assay

scientific article published in May 2005

St. Louis Encephalitis Virus in the Southwestern United States: A Phylogeographic Case for a Multi-Variant Introduction Event ⬇️

scientific article

Staphylococcus aureus CC398: Host Adaptation and Emergence of Methicillin Resistance in Livestock

article

Staphylococcus aureus CC398: host adaptation and emergence of methicillin resistance in livestock

scientific article published on 21 February 2012

Strain typing of Borrelia burgdorferi, Borrelia afzelii, and Borrelia garinii by using multiple-locus variable-number tandem repeat analysis

scientific article

Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain

scientific article published on 8 November 2006

Structural characterization of polysaccharides expressed by Burkholderia oklahomensis E0147.

scientific article

Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping

scientific article

TaqMan real-time PCR assays for single-nucleotide polymorphisms which identify Francisella tularensis and its subspecies and subpopulations

scientific article

Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague.

scientific article published on 5 September 2017

Texas isolates closely related to Bacillus anthracis Ames

scientific article published in September 2008

The "nuclearization" of biology is a threat to health and security

scientific article published on 01 September 2009

The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers

scientific article

The International Bacillus anthracis, B. cereus, and B. thuringiensis Conference, "Bacillus-ACT05".

scientific article published on May 2006

The Mountain Meadows Massacre and "poisoned springs": scientific testing of the more recent, anthrax theory

scientific article (publication date: 2013)

The Phylogeny of Bacillus cereus sensu lato

scientific article published in February 2016

The complete genome sequence of Bacillus anthracis Ames "Ancestor".

scientific article published on 24 October 2008

The complete genome sequence of Bacillus thuringiensis Al Hakam

scientific article published on 2 March 2007

The effects of circumcision on the penis microbiome

scientific article

The epidemic of extended-spectrum-β-lactamase-producing Escherichia coli ST131 is driven by a single highly pathogenic subclone, H30-Rx

scientific article published on 17 December 2013

The genetic and molecular basis of O-antigenic diversity in Burkholderia pseudomallei lipopolysaccharide

scientific article

The genome and variation of Bacillus anthracis

scientific article

The innate immune response may be important for surviving plague in wild Gunnison's prairie dogs

scientific article

The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes

scientific article

The otologic microbiome: a study of the bacterial microbiota in a pediatric patient with chronic serous otitis media using 16SrRNA gene-based pyrosequencing

scientific article published in July 2011

The toxin/immunity network of Burkholderia pseudomallei contact‐dependent growth inhibition (CDI) systems ⬇️

scientific article published on April 4, 2012

Towards a rapid molecular diagnostic for melioidosis: Comparison of DNA extraction methods from clinical specimens ⬇️

scientific article published on November 12, 2011

Tracing melioidosis back to the source: using whole-genome sequencing to investigate an outbreak originating from a contaminated domestic water supply

scientific article

Triple combination antiviral drug (TCAD) composed of amantadine, oseltamivir, and ribavirin impedes the selection of drug-resistant influenza A virus

scientific article

Triple combination of oseltamivir, amantadine, and ribavirin displays synergistic activity against multiple influenza virus strains in vitro.

scientific article

Tularemia in Alaska, 1938 - 2010

scientific article published on 18 November 2011

Universal method for producing ROX-labeled size standards suitable for automated genotyping

scientific article published in September 2004

Unprecedented Melioidosis Cases in Northern Australia Caused by an Asian Burkholderia pseudomallei Strain Identified by Using Large-Scale Comparative Genomics

scientific article

Use of a real-time PCR TaqMan assay for rapid identification and differentiation of Burkholderia pseudomallei and Burkholderia mallei

scientific article

Use of single nucleotide polymorphisms in the plcR gene for specific identification of Bacillus anthracis

scientific article

Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus

scientific article published on 10 July 2015

VNTR analysis of selected outbreaks of Burkholderia pseudomallei in Australia

scientific article published on 20 December 2006

VNTR diversity in Yersinia pestis isolates from an animal challenge study reveals the potential for in vitro mutations during laboratory cultivation

scientific article published on 21 September 2016

Valley fever: finding new places for an old disease: Coccidioides immitis found in Washington State soil associated with recent human infection

scientific article

Water as Source of Francisella tularensis Infection in Humans, Turkey.

scientific article

When outgroups fail; phylogenomics of rooting the emerging pathogen, Coxiella burnetii

scientific article published on 4 June 2013

Whole Genome Analysis of Injectional Anthrax Identifies Two Disease Clusters Spanning More Than 13 Years

scientific article published on 6 October 2015

Whole Genome Sequence Typing to Investigate the Apophysomyces Outbreak following a Tornado in Joplin, Missouri, 2011 ⬇️

scientific article published on November 27, 2012

Whole genome SNP typing to investigate methicillin-resistant Staphylococcus aureus carriage in a health-care provider as the source of multiple surgical site infections

scientific article

Whole genome sequence analysis of Cryptococcus gattii from the Pacific Northwest reveals unexpected diversity

scientific article

Whole-genome analysis of Exserohilum rostratum from an outbreak of fungal meningitis and other infections

scientific article

Whole-genome sequencing investigation of animal-skin-drum-associated UK anthrax cases reveals evidence of mixed populations and relatedness to a US case

scientific article published on 7 November 2015

Whole-genome sequencing of Burkholderia pseudomallei isolates from an unusual melioidosis case identifies a polyclonal infection with the same multilocus sequence type

scientific article

Whole-genome-based phylogeny and divergence of the genus Brucella

scientific article published on 06 February 2009

Within-host evolution of Brucella canis during a canine brucellosis outbreak in a kennel

scientific article

Within-host evolution of Burkholderia pseudomallei in four cases of acute melioidosis

scientific article

Within-host evolution of Burkholderia pseudomallei over a twelve-year chronic carriage infection

scientific article published on 16 July 2013

Worldwide genetic relationships among Francisella tularensis isolates determined by multiple-locus variable-number tandem repeat analysis

scientific article published on September 2004

Worldwide genotyping of castor bean germplasm (Ricinus communis L.) using AFLPs and SSRs

scientific article published on 4 July 2007

Yersinia pestis DNA from skeletal remains from the 6(th) century AD reveals insights into Justinianic Plague

scientific article published in 2013

Yersinia pestis and the plague of Justinian 541-543 AD: a genomic analysis.

scientific article

Yersinia pestis and the three plague pandemics--authors' reply

scientific article published in October 2014

Yersinia pestis evolution on a small timescale: comparison of whole genome sequences from North America

scientific article

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

scientific article published in December 2010

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