List of works - Tom Heskes

A Bayesian Framework for Combining Protein and Network Topology Information for Predicting Protein-Protein Interactions

scientific article

A Causal and Mediation Analysis of the Comorbidity Between Attention Deficit Hyperactivity Disorder (ADHD) and Autism Spectrum Disorder (ASD).

scientific article

A comparative study of cell classifiers for image-based high-throughput screening

scientific article

A direct comparison of visual discrimination of shape and size on a large range of aspect ratios

scientific article published on 11 August 2013

A fast algorithm for determining bounds and accurate approximate p-values of the rank product statistic for replicate experiments

scientific article

A fast algorithm for determining bounds and accurate approximate p-values of the rank product statistic for replicate experiments

Additive Dose Response Models: Explicit Formulation and the Loewe Additivity Consistency Condition

scientific article published on 6 February 2018

Approximate Expectation Maximization ⬇️

scientific article published in January 2004

Automated detection of white matter hyperintensities of all sizes in cerebral small vessel disease

scientific article published in December 2016

BCM: toolkit for Bayesian analysis of Computational Models using samplers

scientific article

Balancing Between Bagging and Bumping ⬇️

scientific article published in January 1997

Bayesian Estimation of Conditional Independence Graphs Improves Functional Connectivity Estimates

scientific article published on 5 November 2015

Bayesian Source Localization with the Multivariate Laplace Prior ⬇️

scientific article published in January 2009

Bayesian data integration for quantifying the contribution of diverse measurements to parameter estimates

scientific article published on 24 October 2017

Bayesian inference of structural brain networks

scientific article published on 4 October 2012

Bayesian sparse partial least squares

scientific article published on 18 September 2013

Bias/Variance Decompositions for Likelihood-Based Estimators ⬇️

scientific article published on July 28, 1998

Causal discovery in an adult ADHD data set suggests indirect link between DAT1 genetic variants and striatal brain activation during reward processing

scientific article

Causal discovery in multiple models from different experiments ⬇️

Clustering ensembles of neural network models

scientific article

Cognitive behavioural therapy with optional graded exercise therapy in patients with severe fatigue with myotonic dystrophy type 1: a multicentre, single-blind, randomised trial

article

Composite survival index to compare virulence changes in azole-resistant Aspergillus fumigatus clinical isolates

scientific article

Conditional and interaction gene-set analysis reveals novel functional pathways for blood pressure

scientific article published in Nature Communications

Convolutional neural networks for transient candidate vetting in large-scale surveys

scholarly article by Fabian Gieseke et al published 23 August 2017 in Monthly Notices of the Royal Astronomical Society

Covert attention allows for continuous control of brain-computer interfaces

scientific article published in April 2010

Deep multi-scale location-aware 3D convolutional neural networks for automated detection of lacunes of presumed vascular origin ⬇️

scientific article published on 4 February 2017

Dynamic decoding of ongoing perception

scientific article published on 13 May 2011

Efficient Bayesian multivariate fMRI analysis using a sparsifying spatio-temporal prior

scientific article published in December 2009

Empirical Bayesian random censoring threshold model improves detection of differentially abundant proteins

scientific article published on 22 August 2014

Estimating the Effect of Early Treatment Initiation in Parkinson's Disease Using Observational Data

scientific article published on 27 October 2020

Exact p-values for pairwise comparison of Friedman rank sums, with application to comparing classifiers

scientific article

Fast sky localization of gravitational waves using deep learning seeded importance sampling

scientific article published in 2022

Fractional Belief Propagation ⬇️

scientific article published in January 2003

Gaussian mixture models and semantic gating improve reconstructions from human brain activity

scientific article

Gene regulation in the intraerythrocytic cycle of Plasmodium falciparum

scientific article

Handling hybrid and missing data in constraint-based causal discovery to study the etiology of ADHD.

scientific article published on 2 December 2016

Haplotype inference in general pedigrees using the cluster variation method

scientific article published on 29 July 2007

Hierarchical Bayesian inference for concurrent model fitting and comparison for group studies

scientific article published on 18 June 2019

Improving Cox survival analysis with a neural-Bayesian approach

scientific article published in October 2004

Inferring the direction of a causal link and estimating its effect via a Bayesian Mendelian randomization approach

scientific article published on 30 May 2019

Interpreting single trial data using groupwise regularisation

scientific article

Lateralized responses during covert attention are modulated by target eccentricity ⬇️

scientific article published on 05 January 2011

Linear reconstruction of perceived images from human brain activity.

scientific article published on 22 July 2013

Location Sensitive Deep Convolutional Neural Networks for Segmentation of White Matter Hyperintensities

scientific article published on 11 July 2017

MAGMA: generalized gene-set analysis of GWAS data

scientific article

Molecular machines in the synapse: overlapping protein sets control distinct steps in neurosecretion

scientific article

Neural decoding with hierarchical generative models

scientific article published on 21 September 2010

On Causal Discovery with Cyclic Additive Noise Models ⬇️

scientific article published in January 2011

On the decoding of intracranial data using sparse orthonormalized partial least squares

scientific article

Practical Confidence and Prediction Intervals ⬇️

scientific article published in January 1997

Predicting carcinoid heart disease with the noisy-threshold classifier

scientific article

Probabilistic clustering of the human connectome identifies communities and hubs

scientific article published on 30 January 2015

Quantifying uncertainty in brain network measures using Bayesian connectomics

scientific article

RankProd 2.0: a refactored Bioconductor package for detecting differentially expressed features in molecular profiling datasets

scientific article published on 8 May 2017

Real-Life Gait Performance as a Digital Biomarker for Motor Fluctuations: The Parkinson@Home Validation Study

scientific article published on 09 October 2020

Regulator Discovery from Gene Expression Time Series of Malaria Parasites: a Hierachical Approach ⬇️

scientific article published in January 2008

Selecting Weighting Factors in Logarithmic Opinion Pools ⬇️

Selecting features for BCI control based on a covert spatial attention paradigm

scientific article published on 23 June 2009

Semi-blind identification of movement-related magnetoencephalogram components using a classification approach

scientific article published in January 2008

Stable Fixed Points of Loopy Belief Propagation Are Local Minima of the Bethe Free Energy ⬇️

scientific article published in January 2003

Statistical Evidence Suggests that Inattention Drives Hyperactivity/Impulsivity in Attention Deficit-Hyperactivity Disorder

scientific article

Structurally-informed Bayesian functional connectivity analysis

scientific article published on 10 October 2013

Task-Dependent Learning of Attention

scientific article (publication date: August 1997)

The exact probability distribution of the rank product statistics for replicated experiments

scientific article

The statistical properties of gene-set analysis

scientific article published on 12 April 2016

List of works by Tom Heskes

A Bayesian Framework for Combining Protein and Network Topology Information for Predicting Protein-Protein Interactions

A Causal and Mediation Analysis of the Comorbidity Between Attention Deficit Hyperactivity Disorder (ADHD) and Autism Spectrum Disorder (ASD).

A comparative study of cell classifiers for image-based high-throughput screening

A direct comparison of visual discrimination of shape and size on a large range of aspect ratios

A fast algorithm for determining bounds and accurate approximate p-values of the rank product statistic for replicate experiments

A fast algorithm for determining bounds and accurate approximate p-values of the rank product statistic for replicate experiments

Additive Dose Response Models: Explicit Formulation and the Loewe Additivity Consistency Condition

Approximate Expectation Maximization ⬇️

Automated detection of white matter hyperintensities of all sizes in cerebral small vessel disease

BCM: toolkit for Bayesian analysis of Computational Models using samplers

Balancing Between Bagging and Bumping ⬇️

Bayesian Estimation of Conditional Independence Graphs Improves Functional Connectivity Estimates

Bayesian Source Localization with the Multivariate Laplace Prior ⬇️

Bayesian data integration for quantifying the contribution of diverse measurements to parameter estimates

Bayesian inference of structural brain networks

Bayesian sparse partial least squares

Bias/Variance Decompositions for Likelihood-Based Estimators ⬇️

Causal discovery in an adult ADHD data set suggests indirect link between DAT1 genetic variants and striatal brain activation during reward processing

Causal discovery in multiple models from different experiments ⬇️

Clustering ensembles of neural network models

Cognitive behavioural therapy with optional graded exercise therapy in patients with severe fatigue with myotonic dystrophy type 1: a multicentre, single-blind, randomised trial

Composite survival index to compare virulence changes in azole-resistant Aspergillus fumigatus clinical isolates

Conditional and interaction gene-set analysis reveals novel functional pathways for blood pressure

Convolutional neural networks for transient candidate vetting in large-scale surveys

Covert attention allows for continuous control of brain-computer interfaces

Deep multi-scale location-aware 3D convolutional neural networks for automated detection of lacunes of presumed vascular origin ⬇️

Dynamic decoding of ongoing perception

Efficient Bayesian multivariate fMRI analysis using a sparsifying spatio-temporal prior

Empirical Bayesian random censoring threshold model improves detection of differentially abundant proteins

Estimating the Effect of Early Treatment Initiation in Parkinson's Disease Using Observational Data

Exact p-values for pairwise comparison of Friedman rank sums, with application to comparing classifiers

Fast sky localization of gravitational waves using deep learning seeded importance sampling

Fractional Belief Propagation ⬇️

Gaussian mixture models and semantic gating improve reconstructions from human brain activity

Gene regulation in the intraerythrocytic cycle of Plasmodium falciparum

Handling hybrid and missing data in constraint-based causal discovery to study the etiology of ADHD.

Haplotype inference in general pedigrees using the cluster variation method

Hierarchical Bayesian inference for concurrent model fitting and comparison for group studies

Improving Cox survival analysis with a neural-Bayesian approach

Inferring the direction of a causal link and estimating its effect via a Bayesian Mendelian randomization approach

Interpreting single trial data using groupwise regularisation

Lateralized responses during covert attention are modulated by target eccentricity ⬇️

Linear reconstruction of perceived images from human brain activity.

Location Sensitive Deep Convolutional Neural Networks for Segmentation of White Matter Hyperintensities

MAGMA: generalized gene-set analysis of GWAS data

Molecular machines in the synapse: overlapping protein sets control distinct steps in neurosecretion

Neural decoding with hierarchical generative models

On Causal Discovery with Cyclic Additive Noise Models ⬇️

On the decoding of intracranial data using sparse orthonormalized partial least squares

Practical Confidence and Prediction Intervals ⬇️

Predicting carcinoid heart disease with the noisy-threshold classifier

Probabilistic clustering of the human connectome identifies communities and hubs

Quantifying uncertainty in brain network measures using Bayesian connectomics

RankProd 2.0: a refactored Bioconductor package for detecting differentially expressed features in molecular profiling datasets

Real-Life Gait Performance as a Digital Biomarker for Motor Fluctuations: The Parkinson@Home Validation Study

Regulator Discovery from Gene Expression Time Series of Malaria Parasites: a Hierachical Approach ⬇️

Selecting Weighting Factors in Logarithmic Opinion Pools ⬇️

Selecting features for BCI control based on a covert spatial attention paradigm

Semi-blind identification of movement-related magnetoencephalogram components using a classification approach

Stable Fixed Points of Loopy Belief Propagation Are Local Minima of the Bethe Free Energy ⬇️

Statistical Evidence Suggests that Inattention Drives Hyperactivity/Impulsivity in Attention Deficit-Hyperactivity Disorder

Structurally-informed Bayesian functional connectivity analysis

Task-Dependent Learning of Attention

The exact probability distribution of the rank product statistics for replicated experiments

The statistical properties of gene-set analysis