List of works - Stéphane Audic

454 pyrosequencing to describe microbial eukaryotic community composition, diversity and relative abundance: a test for marine haptophytes

scientific article

A giant virus in amoebae

scientific article (publication date: 28 March 2003)

Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction

scientific article published in 2009

Assessment of species diversity and distribution of an ancient diatom lineage using a DNA metabarcoding approach

scientific article

BLAST-EXPLORER helps you building datasets for phylogenetic analysis.

scientific article

Benthic protists: the under-charted majority

scientific article

Brucella microti: the genome sequence of an emerging pathogen

scientific article

CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms

scientific article

Comparative genomics of multidrug resistance in Acinetobacter baumannii

scientific article

Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes

scientific article published on 16 October 2015

Diverse molecular signatures for ribosomally 'active' Perkinsea in marine sediments

scientific article (publication date: 29 April 2014)

Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms

scientific article

Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing

scientific article

Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay.

scientific article published on 19 November 2012

Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles

scientific article

Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee

scientific article

Gene expression in proliferating cells of the dinoflagellate Alexandrium catenella (Dinophyceae).

scientific article

Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water-living bacteria

scientific article

Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens

scientific article published on 12 May 2006

Genome-wide analysis of heteroduplex DNA in mismatch repair-deficient yeast cells reveals novel properties of meiotic recombination pathways

scientific article

Global distribution and vertical patterns of a prymnesiophyte-cyanobacteria obligate symbiosis

scientific article published on 25 September 2015

Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding

scientific article published on 3 September 2015

Heart specific genes revealed by EST sampling.

scientific article

Heart-specific genes revealed by expressed sequence tag (EST) sampling

scientific article

Impact of the tail and mutations G131V and M129V on prion protein flexibility

scientific article published on 01 May 2003

In Ssarch of new anti-bacterial target genes: a comparative/structural genomics approach

scientific article

Insights into global diatom distribution and diversity in the world's ocean

scientific article

Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression

scientific article

Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome

scientific article

Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton

scientific article

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

scientific article published on 28 June 2015

Mechanisms of evolution in Rickettsia conorii and R. prowazekii

scientific article (publication date: 14 September 2001)

MicRhoDE: a curated database for the analysis of microbial rhodopsin diversity and evolution

scientific article published on 18 August 2015

Mimivirus and the emerging concept of "giant" virus

scientific article published on 15 February 2006

Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes

scientific article

Ocean plankton. Determinants of community structure in the global plankton interactome

scientific article published on May 2015

Ocean plankton. Environmental characteristics of Agulhas rings affect interocean plankton transport

scientific article

Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean

scientific article published on May 2015

PFR²: a curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution.

scientific article published on 31 March 2015

PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments

scientific article

Patterns of rare and abundant marine microbial eukaryotes

scientific article

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

scientific article (publication date: July 2008)

PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy.

scientific article published on 5 March 2015

Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context

scientific article published on 27 January 2014

Positional clustering of differentially expressed genes on human chromosomes 20, 21 and 22

scientific article published on 10 January 2003

Protein coding palindromes are a unique but recurrent feature in Rickettsia

scientific article published on May 2002

Rapid comparative genomic analysis for clinical microbiology: the Francisella tularensis paradigm

scientific article published on 11 April 2008

Recent advances in computational genomics

scientific article

Reductive genome evolution from the mother of Rickettsia

scientific article

Rickettsia felis, from culture to genome sequencing.

scientific article

SAmBA: an interactive software for optimizing the design of biological macromolecules crystallization experiments.

scientific article published on October 1997

Self-identification of protein-coding regions in microbial genomes.

scientific article

Selfish DNA in Protein-Coding Genes of Rickettsia

scientific article

Some lessons from Rickettsia genomics

scientific article

Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms

scientific article published on 24 February 2015

The 1.2-megabase genome sequence of Mimivirus

scientific article

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy

scientific article

The Tara Oceans voyage reveals global diversity and distribution patterns of marine planktonic ciliates

scientific article

The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii

scientific article

The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella

scientific article

The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite

scientific article

The polyadenylation site of Mimivirus transcripts obeys a stringent 'hairpin rule'.

scientific article published on 29 April 2009

The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.).

scientific article

Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell

scientific article (publication date: 2009)

UniEuk: Time to Speak a Common Language in Protistology!

scientific article

mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus

scientific article

List of works by Stéphane Audic

454 pyrosequencing to describe microbial eukaryotic community composition, diversity and relative abundance: a test for marine haptophytes

A giant virus in amoebae

Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction

Assessment of species diversity and distribution of an ancient diatom lineage using a DNA metabarcoding approach

BLAST-EXPLORER helps you building datasets for phylogenetic analysis.

Benthic protists: the under-charted majority

Brucella microti: the genome sequence of an emerging pathogen

CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms

Comparative genomics of multidrug resistance in Acinetobacter baumannii

Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes

Diverse molecular signatures for ribosomally 'active' Perkinsea in marine sediments

Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms

Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing

Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay.

Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles

Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee

Gene expression in proliferating cells of the dinoflagellate Alexandrium catenella (Dinophyceae).

Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water-living bacteria

Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens

Genome-wide analysis of heteroduplex DNA in mismatch repair-deficient yeast cells reveals novel properties of meiotic recombination pathways

Global distribution and vertical patterns of a prymnesiophyte-cyanobacteria obligate symbiosis

Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding

Heart specific genes revealed by EST sampling.

Heart-specific genes revealed by expressed sequence tag (EST) sampling

Impact of the tail and mutations G131V and M129V on prion protein flexibility

In Ssarch of new anti-bacterial target genes: a comparative/structural genomics approach

Insights into global diatom distribution and diversity in the world's ocean

Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression

Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome

Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

Mechanisms of evolution in Rickettsia conorii and R. prowazekii

MicRhoDE: a curated database for the analysis of microbial rhodopsin diversity and evolution

Mimivirus and the emerging concept of "giant" virus

Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes

Ocean plankton. Determinants of community structure in the global plankton interactome

Ocean plankton. Environmental characteristics of Agulhas rings affect interocean plankton transport

Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean

PFR²: a curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution.

PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments

Patterns of rare and abundant marine microbial eukaryotes

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy.

Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context

Positional clustering of differentially expressed genes on human chromosomes 20, 21 and 22

Protein coding palindromes are a unique but recurrent feature in Rickettsia

Rapid comparative genomic analysis for clinical microbiology: the Francisella tularensis paradigm

Recent advances in computational genomics

Reductive genome evolution from the mother of Rickettsia

Rickettsia felis, from culture to genome sequencing.

SAmBA: an interactive software for optimizing the design of biological macromolecules crystallization experiments.

Self-identification of protein-coding regions in microbial genomes.

Selfish DNA in Protein-Coding Genes of Rickettsia

Some lessons from Rickettsia genomics

Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms

The 1.2-megabase genome sequence of Mimivirus

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy

The Tara Oceans voyage reveals global diversity and distribution patterns of marine planktonic ciliates

The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii

The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella

The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite

The polyadenylation site of Mimivirus transcripts obeys a stringent 'hairpin rule'.

The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.).

Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell

UniEuk: Time to Speak a Common Language in Protistology!

mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus