List of works by Catherine Robert

A Metagenomic Investigation of the Duodenal Microbiota Reveals Links with Obesity

scientific article published on 10 September 2015

A giant virus in amoebae

scientific article (publication date: 28 March 2003)

A panoramic view of gene expression in the human kidney ⬇️

scientific article published on October 31, 2003

Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction

scientific article published in 2009

Characterization of Viral Communities of Biting Midges and Identification of Novel Thogotovirus Species and Rhabdovirus Genus

scientific article

Characterization of a novel Gram-stain-positive anaerobic coccus isolated from the female genital tract: Genome sequence and description of Murdochiella vaginalis sp. nov.

scientific article

Clostridium butyricum Strains and Dysbiosis Linked to Necrotizing Enterocolitis in Preterm Neonates

scientific article

Comparative analysis of Acinetobacters: three genomes for three lifestyles

scientific article published on 19 March 2008

Comparative genomics of multidrug resistance in Acinetobacter baumannii

scientific article

Comparison of a Modern and Fossil Pithovirus Reveals Its Genetic Conservation and Evolution

scientific article

Complete genome sequence of Borrelia crocidurae

scientific article published on July 2012

Complete genome sequence of Courdo11 virus, a member of the family Mimiviridae

scientific article published on December 2013

Complete genome sequence of Methanomassiliicoccus luminyensis, the largest genome of a human-associated Archaea species

scientific article published on September 2012

Complete genome sequence of Rickettsia slovaca, the agent of tick-borne lymphadenitis

scientific article published on March 2012

Culture of previously uncultured members of the human gut microbiota by culturomics

scientific article

Culturomics and pyrosequencing evidence of the reduction in gut microbiota diversity in patients with broad-spectrum antibiotics

scientific article

Deciphering genomic virulence traits of a Staphylococcus epidermidis strain causing native-valve endocarditis

scientific article published on 30 January 2013

Dental pulp as a source of low-contaminated DNA.

scientific article published on 8 February 2017

Description of Gabonibacter massiliensis gen. nov., sp. nov., a New Member of the Family Porphyromonadaceae Isolated from the Human Gut Microbiota

scientific article

Detection of novel RNA viruses from free-living gorillas, Republic of the Congo: genetic diversity of picobirnaviruses.

scientific article published on 23 February 2018

Divergent Gemycircularvirus in HIV-Positive Blood, France

scientific article published in November 2015

Draft Genome Sequence of Coxiella burnetii Strain Cb196, an Agent of Endocarditis in Saudi Arabia

scientific article

Draft Genome Sequence of Kingella negevensis SW7208426, the First European Strain of K. negevensis Isolated from a Healthy Child in Switzerland

scientific article published on 29 June 2017

Draft Genome Sequence of Mycobacterium acapulcensis Strain CSURP1424

scientific article

Draft Genome Sequence of Mycobacterium asiaticum Strain DSM 44297.

scientific article published on 17 April 2014

Draft Genome Sequence of Mycobacterium austroafricanum DSM 44191.

scientific article published on 17 April 2014

Draft Genome Sequence of Mycobacterium boenickei CIP 107829.

scientific article published on 4 May 2017

Draft Genome Sequence of Mycobacterium bohemicum Strain DSM 44277T.

scientific article published on 6 August 2015

Draft Genome Sequence of Mycobacterium colombiense

scientific article published on 6 April 2017

Draft Genome Sequence of Mycobacterium cosmeticum DSM 44829.

scientific article

Draft Genome Sequence of Mycobacterium europaeum Strain CSUR P1344.

scientific article published on 23 July 2015

Draft Genome Sequence of Mycobacterium farcinogenes NCTC 10955.

scientific article

Draft Genome Sequence of Mycobacterium houstonense Strain ATCC 49403T

scientific article (publication date: 26 May 2016)

Draft Genome Sequence of Mycobacterium interjectum Strain ATCC 51457T

scientific article (publication date: 26 May 2016)

Draft Genome Sequence of Mycobacterium lentiflavum CSUR P1491.

scientific article published on 23 July 2015

Draft Genome Sequence of Mycobacterium mageritense DSM 44476T.

scientific article

Draft Genome Sequence of Mycobacterium mucogenicum Strain CSUR P2099.

scientific article published on 19 November 2015

Draft Genome Sequence of Mycobacterium neoaurum Strain DSM 44074T.

scientific article

Draft Genome Sequence of Mycobacterium neworleansense Strain ATCC 49404T

scientific article published on 5 November 2015

Draft Genome Sequence of Mycobacterium peregrinum Strain CSUR P2098.

scientific article published on 5 November 2015

Draft Genome Sequence of Mycobacterium triplex DSM 44626.

scientific article

Draft Genome Sequence of Mycobacterium tuberculosis Strain MT11, Which Represents a New Lineage

scientific article published on 4 June 2015

Draft Genome Sequence of Mycobacterium tuberculosis Strain MT43, a Representative of the Manu2 Genotype

scientific article published on 4 June 2015

Draft Genome Sequence of Mycobacterium vulneris DSM 45247T.

scientific article

Draft Genome Sequence of Necropsobacter rosorum Strain P709T.

scientific article published on 9 October 2014

Draft Genome Sequence of a Human-Associated Isolate of Methanobrevibacter arboriphilicus, the Lowest-G+C-Content Archaeon

scientific article published on 23 January 2014

Draft Genome Sequencing of Methanobrevibacter oralis Strain JMR01, Isolated from the Human Intestinal Microbiota

scientific article published on 20 February 2014

Draft genome of Gemmata massiliana sp. nov, a water-borne Planctomycetes species exhibiting two variants

scientific article

Draft genome sequence of Actinomyces massiliensis strain 4401292T

scientific article

Draft genome sequence of Brevibacterium massiliense strain 541308T.

scientific article

Draft genome sequence of Staphylococcus massiliensis strain 5402776T.

scientific article

Draft genome sequence of Tsukamurella sp. strain 1534.

scientific article

Draft genome sequences of Terra1 and Terra2 viruses, new members of the family Mimiviridae isolated from soil

scientific article published on 31 January 2014

Evidence of transfer by conjugation of type IV secretion system genes between Bartonella species and Rhizobium radiobacter in amoeba

scientific article

Faustovirus-Like Asfarvirus in Hematophagous Biting Midges and Their Vertebrate Hosts

scientific article

First isolation of Mimivirus in a patient with pneumonia

scientific article

Fournierella massiliensis gen. nov., sp. nov., a new human-associated member of the family Ruminococcaceae

scientific article

Genome Sequence of Bacillus simplex Strain P558, Isolated from a Human Fecal Sample

scientific article published on 11 December 2014

Genome Sequence of Borrelia crocidurae Strain 03-02, a Clinical Isolate from Senegal

scientific article

Genome Sequence of Legionella anisa, Isolated from a Respiratory Sample, Using an Amoebal Coculture Procedure

scientific article published on 27 February 2014

Genome Sequence of Legionella massiliensis, Isolated from a Cooling Tower Water Sample

scientific article published on 16 October 2014

Genome Sequence of Rickettsia gravesii, Isolated from Western Australian Ticks

scientific article

Genome Sequence of the Tick-Borne Pathogen Rickettsia raoultii

scientific article published on 21 April 2016

Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water-living bacteria

scientific article

Genome sequence and description of Alistipes senegalensis sp. nov

scientific article

Genome sequence and description of Timonella senegalensis gen. nov., sp. nov., a new member of the suborder Micrococcinae

scientific article

Genome sequence of "Rickettsia sibirica subsp. mongolitimonae".

scientific article

Genome sequence of Afipia birgiae, a rare bacterium associated with Amoebae

scientific article

Genome sequence of Bartonella birtlesii, a bacterium isolated from small rodents of the genus Apodemus

scientific article published on September 2012

Genome sequence of Bartonella rattaustraliani, a bacterium isolated from an Australian rat

scientific article published on December 2012

Genome sequence of Bartonella rattimassiliensis, a bacterium isolated from European Rattus norvegicus

scientific article

Genome sequence of Coxiella burnetii 109, a doxycycline-resistant clinical isolate

scientific article published on December 2012

Genome sequence of Diplorickettsia massiliensis, an emerging Ixodes ricinus-associated human pathogen

scientific article

Genome sequence of Lactobacillus ingluviei, a bacterium associated with weight gain in animals

scientific article published on October 2012

Genome sequence of Legionella tunisiensis strain LegM(T), a new Legionella species isolated from hypersaline lake water

scientific article published on November 2012

Genome sequence of Microbacterium yannicii, a bacterium isolated from a cystic fibrosis patient

scientific article published on September 2012

Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut.

scientific article published on 29 October 2015

Genome sequence of Reyranella massiliensis, a bacterium associated with amoebae

scientific article

Genome sequence of Rickettsia australis, the agent of Queensland tick typhus

scientific article

Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens

scientific article

Genome sequence of Rickettsia conorii subsp. caspia, the agent of Astrakhan fever

scientific article published on September 2012

Genome sequence of Rickettsia conorii subsp. indica, the agent of Indian tick typhus

scientific article published on June 2012

Genome sequence of Rickettsia conorii subsp. israelensis, the agent of Israeli spotted fever

scientific article published on September 2012

Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome

scientific article

Genomic analysis of Rickettsia japonica strain YHT

scientific article

Genomic comparison of Rickettsia helvetica and other Rickettsia species

scientific article

Genomic comparison of Rickettsia honei strain RBT and other Rickettsia Species

scientific article

Genomic, proteomic, and transcriptomic analysis of virulent and avirulent Rickettsia prowazekii reveals its adaptive mutation capabilities

scientific article

Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms

scientific article

Glycans affect DNA extraction and induce substantial differences in gut metagenomic studies

scientific article published on 18 May 2016

Gut Bacteria Missing in Severe Acute Malnutrition, Can We Identify Potential Probiotics by Culturomics?

scientific article

Gut microbiome and dietary patterns in different Saudi populations and monkeys

scientific article

Gut microbiota associated with HIV infection is significantly enriched in bacteria tolerant to oxygen

scientific article published on 28 July 2016

High-level colonisation of the human gut by Verrucomicrobia following broad-spectrum antibiotic treatment

scientific article

High-quality genome sequence and description of Bacillus dielmoensis strain FF4(T) sp. nov.

scientific article

Host-Associated Metagenomics: A Guide to Generating Infectious RNA Viromes

scientific article published on 2 October 2015

Initial sequencing and analysis of the human genome

scientific article published on 15 February 2001

Insight into cross-talk between intra-amoebal pathogens

scientific article

Isolation and characterization of Kingella negevensis sp. nov., a novel Kingella species detected in a healthy paediatric population

scientific article

Kaumoebavirus, a New Virus That Clusters with Faustoviruses and Asfarviridae

scientific article published on 28 October 2016

Kingella kingae KK247, an Atypical Pulsed-Field Gel Electrophoresis Clone A Strain

scientific article

Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome

scientific article

Marseillevirus-like virus recovered from blood donated by asymptomatic humans

scientific article published on 2 July 2013

Microbial Culturomics Broadens Human Vaginal Flora Diversity: Genome Sequence and Description of Prevotella lascolaii sp. nov. Isolated from a Patient with Bacterial Vaginosis

scientific article published on 15 February 2018

Microbial Culturomics to Map Halophilic Bacterium in Human Gut: Genome Sequence and Description of Oceanobacillus jeddahense sp. nov.

scientific article

Microvirga massiliensis sp. nov., the human commensal with the largest genome

scientific article (publication date: April 2016)

Mimivirus shows dramatic genome reduction after intraamoebal culture

scientific article

Molecular studies neglect apparently gram-negative populations in the human gut microbiota

scientific article

Mycobacterium ahvazicum sp. nov., the nineteenth species of the Mycobacterium simiae complex.

scientific article published on 7 March 2018

Non contiguous-finished genome sequence and description of Clostridium jeddahense sp. nov.

scientific article

Non contiguous-finished genome sequence and description of Enorma timonensis sp. nov

scientific article

Non contiguous-finished genome sequence and description of Enterobacter massiliensis sp. nov.

scientific article

Non contiguous-finished genome sequence and description of Peptoniphilus grossensis sp. nov

scientific article

Non contiguous-finished genome sequence and description of Peptoniphilus obesi sp. nov

scientific article

Non contiguous-finished genome sequence and description of Peptoniphilus timonensis sp. nov

scientific article

Non-contiguous finished genome sequence and description of Alistipes ihumii sp. nov.

scientific article

Non-contiguous finished genome sequence and description of Anaerococcus pacaensis sp. nov., a new species of anaerobic bacterium

scientific article

Non-contiguous finished genome sequence and description of Anaerococcus provenciensis sp. nov.

scientific article

Non-contiguous finished genome sequence and description of Anaerococcus vaginalis

scientific article published on 23 July 2012

Non-contiguous finished genome sequence and description of Bacillus massilioanorexius sp. nov

scientific article

Non-contiguous finished genome sequence and description of Bacillus massiliogorillae sp. nov.

scientific article

Non-contiguous finished genome sequence and description of Bacteroides neonati sp. nov., a new species of anaerobic bacterium

scientific article

Non-contiguous finished genome sequence and description of Bartonella florenciae sp. nov.

scientific article

Non-contiguous finished genome sequence and description of Bartonella senegalensis sp. nov.

scientific article

Non-contiguous finished genome sequence and description of Brevibacterium senegalense sp. nov

scientific article

Non-contiguous finished genome sequence and description of Clostridium dakarense sp. nov.

scientific article

Non-contiguous finished genome sequence and description of Clostridium saudii sp. nov.

scientific article

Non-contiguous finished genome sequence and description of Clostridium senegalense sp. nov

scientific article

Non-contiguous finished genome sequence and description of Corynebacterium jeddahense sp. nov

scientific article

Non-contiguous finished genome sequence and description of Fenollaria massiliensis gen. nov., sp. nov., a new genus of anaerobic bacterium

scientific article

Non-contiguous finished genome sequence and description of Gorillibacterium massiliense gen. nov, sp. nov., a new member of the family Paenibacillaceae

scientific article

Non-contiguous finished genome sequence and description of Halopiger djelfamassiliensis sp. nov

scientific article

Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov.

scientific article

Non-contiguous finished genome sequence and description of Kallipyga massiliensis gen. nov., sp. nov., a new member of the family Clostridiales Incertae Sedis XI

scientific article

Non-contiguous finished genome sequence and description of Kurthia massiliensis sp. nov

scientific article

Non-contiguous finished genome sequence and description of Kurthia senegalensis sp. nov.

scientific article

Non-contiguous finished genome sequence and description of Oceanobacillus massiliensis sp. nov.

scientific article

Non-contiguous finished genome sequence and description of Paenibacillus gorillae sp. nov

scientific article

Non-contiguous finished genome sequence of Corynebacterium timonense type strain 5401744(T.).

scientific article published on 25 April 2014

Non-contiguous finished genome sequence of Phocaeicola abscessus type strain 7401987(T.).

scientific article published on 15 December 2013

Non-contiguous finished genome sequence of Prevotella timonensis type strain 4401737(T.).

scientific article published on 20 February 2014

Non-contiguous genome sequence of Mycobacterium simiae strain DSM 44165(T.).

scientific article published on 07 June 2013

Non-contiguous-Finished Genome Sequence and Description of Paenibacillus camerounensis sp. nov.

scientific article

Noncontiguous Genome Sequence of Mycobacterium septicum Strain DSM 44393T.

scientific article published on 15 August 2013

Pan-Genome Analysis of Brazilian Lineage A Amoebal Mimiviruses

scientific article published on 26 June 2015

Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm

scientific article

Partial disruption of translational and posttranslational machinery reshapes growth rates of Bartonella birtlesii

scientific article

Phylogenomic analysis of Odyssella thessalonicensis fortifies the common origin of Rickettsiales, Pelagibacter ubique and Reclimonas americana mitochondrion

scientific article published in 2011

Polyphasic analysis of a middle ages coprolite microbiota, Belgium

scientific article

Provirophages and transpovirons as the diverse mobilome of giant viruses

scientific article

RETRACTED ARTICLE: Increased Gut Redox and Depletion of Anaerobic and Methanogenic Prokaryotes in Severe Acute Malnutrition

scientific article published on 17 May 2016 and retracted on 30 October 2023

Rapid comparative genomic analysis for clinical microbiology: the Francisella tularensis paradigm

scientific article published on 11 April 2008

Real-time sequencing to decipher the molecular mechanism of resistance of a clinical pan-drug-resistant Acinetobacter baumannii isolate from Marseille, France

scientific article published on 15 October 2012

Reductive genome evolution from the mother of Rickettsia

scientific article

Related giant viruses in distant locations and different habitats: Acanthamoeba polyphaga moumouvirus represents a third lineage of the Mimiviridae that is close to the megavirus lineage

scientific article published on January 2012

Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing

scientific article published on 24 October 2018

Rise of Microbial Culturomics: Noncontiguous Finished Genome Sequence and Description of Beduini massiliensis gen. nov., sp. nov.

scientific article

Risungbinella massiliensis sp. nov., a new member of Thermoactinomycetaceae isolated from human gut.

scientific article

Samba virus: a novel mimivirus from a giant rain forest, the Brazilian Amazon

scientific article published on 14 May 2014

Saudi Moumouvirus, the First Group B Mimivirus Isolated from Asia

scientific article published on 20 December 2016

Sediminibacillus massiliensis sp. nov., a moderately halophilic, Gram-positive bacterium isolated from a stool sample of a young Senegalese man.

scientific article published on 7 February 2018

Sequence and annotation of Rickettsia sibirica sibirica genome

scientific article published on May 2012

Staphylococcus aureus subsp. anaerobius strain ST1464 genome sequence

scientific article published on 15 October 2013

The 1.2-megabase genome sequence of Mimivirus

scientific article

The DNA sequence and analysis of human chromosome 14

scientific article (publication date: 6 February 2003)

The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii

scientific article

The genome of Coxiella burnetii Z3055, a clone linked to the Netherlands Q fever outbreaks, provides evidence for the role of drift in the emergence of epidemic clones

scientific article published on 16 September 2014

The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite

scientific article

The rhizome of the multidrug-resistant Enterobacter aerogenes genome reveals how new "killer bugs" are created because of a sympatric lifestyle

scientific article published on 15 October 2012

The virophage as a unique parasite of the giant mimivirus

scientific article

Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome

scientific article

Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium

scientific article

Use of genome selected repeated sequences increases the sensitivity of PCR detection of Tropheryma whipplei.

scientific article

Variations of plasmid content in Rickettsia felis

scientific article

Viruses in the desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian Sahara

scientific article

Viruses with more than 1,000 genes: Mamavirus, a new Acanthamoeba polyphaga mimivirus strain, and reannotation of Mimivirus genes

scientific article

Whole-genome assembly of Akkermansia muciniphila sequenced directly from human stool

scientific article

Yersinia pestis halotolerance illuminates plague reservoirs

scientific article

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