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List of works by Miguel Perez-Enciso

10th WCGALP in beautiful Vancouver.

scientific article published on October 2014

A Genome Wide Detection of Quantitative Trait Loci on Pig Maternal Infanticide Behavior in a Large Scale White Duroc × Erhualian Resource Population

article

A Pathway-Centered Analysis of Pig Domestication and Breeding in Eurasia.

scientific article

A QTL for intramuscular fat and backfat thickness is located on porcine Chromosome 6

scientific article published on 01 April 2000

A QTL on pig chromosome 4 affects fatty acid metabolism: evidence from an Iberian by Landrace intercross

scientific article published on 01 October 2000

A comparison between methods for linkage disequilibrium fine mapping of quantitative trait loci

scientific article published on 01 February 2004

A comparison of normal and nonnormal mixed models for number of lambs born in Norwegian sheep

scientific article published on 01 May 1994

A deep catalog of autosomal single nucleotide variation in the pig

scientific article

A functional regulatory variant of MYH3 influences muscle fiber-type composition and intramuscular fat content in pigs

scientific article published on 11 October 2019

A method for computing identity by descent probabilities and quantitative trait loci mapping with dominant (AFLP) markers

scientific article published on 01 June 2002

A non-synonymous mutation in a conserved site of theMTTPgene is strongly associated with protein activity and fatty acid profile in pigs

scientific article published on 03 June 2009

A quantitative trait locus genome scan for porcine muscle fiber traits reveals overdominance and epistasis1

scientific article published on 18 July 2008

Adipocyte fatty-acid binding protein is closely associated to the porcine FAT1 locus on chromosome 4.

scientific article published in November 2006

Analyses of pig genomes provide insight into porcine demography and evolution

scientific article

Assessment of genetic variation explained by markers for wool traits in sheep via a segment mapping approach

scientific article published on 01 July 2001

Assignment of RAD51C to porcine chromosome 12 and identification of intronic variability.

scientific article published in October 2005

Association between plasma metabolites and gene expression profiles in five porcine endocrine tissues.

scientific article

Automatic Fruit Morphology Phenome and Genetic Analysis: An Application in the Octoploid Strawberry

scientific article published on 12 May 2021

Building phenotype networks to improve QTL detection: a comparative analysis of fatty acid and fat traits in pigs

article

Can Deep Learning Improve Genomic Prediction of Complex Human Traits?

article

Characterization of the porcine FABP5 gene and its association with the FAT1 QTL in an Iberian by Landrace cross

article

Characterization of the porcine acyl-CoA synthetase long-chain 4 gene and its association with growth and meat quality traits.

scientific article published in June 2006

Characterization of the porcine nutrient and taste receptor gene repertoire in domestic and wild populations across the globe

scientific article

Classical and mixed-model analysis of an index selection experiment for fecundity in Drosophila melanogaster ⬇️

scientific article published on September 1, 1992

Combining gene expression and molecular marker information for mapping complex trait genes: a simulation study

scientific article

Computation of identity by descent probabilities conditional on DNA markers via a Monte Carlo Markov Chain method.

scientific article published on September 2000

Conservation genomic analysis of domestic and wild pig populations from the Iberian Peninsula

scientific article

Copy number variation in the porcine genome inferred from a 60 k SNP BeadChip

scientific article

Correction to: Opportunities and limits of combining microbiome and genome data for complex trait prediction

scientific article published in 2021

Data modeling as a main source of discrepancies in single and multiple marker association methods

scientific article

Detection of QTL affecting fatty acid composition in the pig.

scientific article published in September 2003

Disease liability prediction from large scale genotyping data using classifiers with a reject option.

scientific article

Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs

scientific article

Effect of the porcine IGF2-intron3-G3072A substitution in an outbred Large White population and in an Iberian × Landrace cross1

scientific article published on 01 December 2005

Evaluating Sequence-Based Genomic Prediction with an Efficient New Simulator

scientific article published on 2 December 2016

Evaluation of FABP2 as candidate gene for a fatty acid composition QTL in porcine chromosome 8.

scientific article

Explaining the genetic basis of complex quantitative traits through prediction models.

scientific article

Exploratory study on the transcriptional profile of pigs subclinically infected with porcine circovirus type 2.

scientific article

Exploring alternative models for sex-linked quantitative trait loci in outbred populations: application to an iberian x landrace pig intercross.

scientific article

Exploring the gonad transcriptome of two extreme male pigs with RNA-seq

scientific article

Fine mapping of complex trait genes combining pedigree and linkage disequilibrium information: a Bayesian unified framework.

scientific article

From SNP co-association to RNA co-expression: novel insights into gene networks for intramuscular fatty acid composition in porcine

scientific article

Future implications of full‐scale genomics for animal breeding: personalized indices? ⬇️

scientific article published on February 1, 2013

Genetic analysis of discrete reproductive traits in sheep using linear and nonlinear models: II. Goodness of fit and predictive ability

scientific article published on 01 January 1997

Genetic evaluation with uncertain parentage: a comparison of methods

scientific article published on 01 June 1992

Genetic improvement of litter size in sheep. A comparison of selection methods.

scientific article published on 15 February 1995

Genetical genomics: use all data

scientific article

Genome data from a sixteenth century pig illuminate modern breed relationships

scientific article

Genome-wide association study for intramuscular fatty acid composition in an Iberian × Landrace cross

scientific article published on 10 July 2012

Genome-wide footprints of pig domestication and selection revealed through massive parallel sequencing of pooled DNA.

scientific article

Genomic relationships computed from either next-generation sequence or array SNP data.

scientific article

Identification of rumen microbial biomarkers linked to methane emission in Holstein dairy cows

scientific article published on 16 August 2019

Impact of breed and sex on porcine endocrine transcriptome: a bayesian biometrical analysis

scientific article

Influence of epistasis on response to genomic selection using complete sequence data

scientific article published on 25 August 2017

Integrating Y-chromosome, mitochondrial, and autosomal data to analyze the origin of pig breeds

scientific article published on 17 June 2009

International conference on quantitative genetics 4: big science for complex traits

scientific article published in October 2012

Interspecific chromosome-wide transcription profiles reveal the existence of mammalian-specific and species-specific chromosome domains

scientific article published on 01 September 2004

Large-scale SNP genotyping in crosses between outbred lines: how useful is it?

scientific article published on 21 October 2009

Large-scale, multibreed, multitrait analyses of quantitative trait loci experiments: the case of porcine X chromosome

scientific article published on 01 October 2005

Leipzig: the dawn of the genomes era ⬇️

scientific article published on 01 October 2010

Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition

scientific article

Many QTLs with minor additive effects are associated with a large difference in growth between two selection lines in chickens

scientific article published on 01 October 2005

Massive parallel sequencing in animal genetics: wherefroms and wheretos

scientific article

Multiple association analysis via simulated annealing (MASSA).

scientific article

Nucleotide variability and linkage disequilibrium patterns at the porcineFABP5gene

article

Nucleotide variability of the porcine SERPINA6 gene and the origin of a putative causal mutation associated with meat quality

scientific article published on 4 November 2010

On genetic differentiation between domestic pigs and Tibetan wild boars

scientific article published on 01 March 2015

On growth, fatness, and form: a further look at porcine chromosome 4 in an Iberian x Landrace cross.

scientific article published in May 2005

On the mapping of quantitative trait loci at marker and non-marker locations

scientific article published on 01 February 2002

Opportunities and limits of combining microbiome and genome data for complex trait prediction

scientific article published in 2021

Optimization of selection response under restricted inbreeding

Partial short-read sequencing of a highly inbred Iberian pig and genomics inference thereof

scientific article

Pig domestication and human-mediated dispersal in western Eurasia revealed through ancient DNA and geometric morphometrics

scientific article (publication date: April 2013)

Pipeliner: software to evaluate the performance of bioinformatics pipelines for next-generation resequencing.

scientific article published on 28 June 2014

Plant polyphenol intake alters gene expression in canine leukocytes

scientific article published on 6 February 2009

Polymorphisms of the porcine dopamine beta-hydroxylase gene and their relation to reproduction and piglet survivability in an Iberian x Meishan F2 intercross.

scientific article published in June 2006

Population and quantitative genetics for a cause

scientific article published on 01 August 2008

Population genomics from pool sequencing

scientific article published on 28 October 2013

Porcine colonization of the Americas: a 60k SNP story.

scientific article published on 19 December 2012

QTL mapping for growth and carcass traits in an Iberian by Landrace pig intercross: additive, dominant and epistatic effects

scientific article published on 01 October 2002

Quantitative trait locus mapping for meat quality traits in an Iberian x Landrace F2 pig population

scientific article published on 01 November 2002

Qxpak.5: old mixed model solutions for new genomics problems

scientific article

Qxpak: a versatile mixed model application for genetical genomics and QTL analyses

scientific article published on 27 May 2004

RAPID COMMUNICATION: A haplotype information theory method reveals genes of evolutionary interest in European vs. Asian pigs

scientific article published on 01 July 2018

Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data.

scientific article

Resequencing studies of nonmodel organisms using closely related reference genomes: optimal experimental designs and bioinformatics approaches for population genomics.

scientific article published on April 2014

Robust QTL effect estimation using the minimum distance method

scientific article published on 01 September 1999

Selection for litter size components: a critical review.

scientific article

SeqBreed: a python tool to evaluate genomic prediction in complex scenarios

scientific article published on 10 February 2020

Sequence- vs. chip-assisted genomic selection: accurate biological information is advised.

scientific article published on 9 May 2015

Sequential bulked typing: a rapid approach for detecting QTLs

scientific article published on 01 March 1998

Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds

scientific article published on 28 February 2018

Test for positional candidate genes for body composition on pig chromosome 6.

scientific article published on July 2002

The 'heritability' of domestication and its functional partitioning in the pig.

scientific article

The chimerical genome of Isla del Coco feral pigs (Costa Rica), an isolated population since 1793 but with remarkable levels of diversity

scientific article published on 22 April 2015

Transcriptome architecture across tissues in the pig

scientific article

Transposable element polymorphisms improve prediction of complex agronomic traits in rice

scientific article published in 2022

Unexpected high polymorphism at the FABP4 gene unveils a complex history for pig populations

scientific article

Whole-genome sequence analysis reveals differences in population management and selection of European low-input pig breeds

scientific article

Worldwide genetic relationships of pigs as inferred from X chromosome SNPs.

scientific article published on 17 May 2012

pSBVB: A Versatile Simulation Tool To Evaluate Genomic Selection in Polyploid Species

scientific article published on 07 February 2019

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