List of works - Miguel Perez-Enciso

Analyses of pig genomes provide insight into porcine demography and evolution

scientific article

Genome-wide footprints of pig domestication and selection revealed through massive parallel sequencing of pooled DNA.

scientific article

Copy number variation in the porcine genome inferred from a 60 k SNP BeadChip

scientific article

Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data.

scientific article

Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition

scientific article

Qxpak: a versatile mixed model application for genetical genomics and QTL analyses

scientific article published on 27 May 2004

Pig domestication and human-mediated dispersal in western Eurasia revealed through ancient DNA and geometric morphometrics

scientific article (publication date: April 2013)

Integrating Y-chromosome, mitochondrial, and autosomal data to analyze the origin of pig breeds

scientific article published on 17 June 2009

Exploring the gonad transcriptome of two extreme male pigs with RNA-seq

scientific article

Sequence- vs. chip-assisted genomic selection: accurate biological information is advised.

scientific article published on 9 May 2015

Many QTLs with minor additive effects are associated with a large difference in growth between two selection lines in chickens

scientific article published on 01 October 2005

Population genomics from pool sequencing

scientific article published on 28 October 2013

Qxpak.5: old mixed model solutions for new genomics problems

scientific article

A QTL on pig chromosome 4 affects fatty acid metabolism: evidence from an Iberian by Landrace intercross

scientific article published on 01 October 2000

A QTL for intramuscular fat and backfat thickness is located on porcine Chromosome 6

scientific article published on 01 April 2000

Conservation genomic analysis of domestic and wild pig populations from the Iberian Peninsula

scientific article

Genome-wide association study for intramuscular fatty acid composition in an Iberian × Landrace cross

scientific article published on 10 July 2012

QTL mapping for growth and carcass traits in an Iberian by Landrace pig intercross: additive, dominant and epistatic effects

scientific article published on 01 October 2002

Quantitative trait locus mapping for meat quality traits in an Iberian x Landrace F2 pig population

scientific article published on 01 November 2002

Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs

scientific article

Detection of QTL affecting fatty acid composition in the pig.

scientific article published in September 2003

Transcriptome architecture across tissues in the pig

scientific article

Resequencing studies of nonmodel organisms using closely related reference genomes: optimal experimental designs and bioinformatics approaches for population genomics.

scientific article published on April 2014

Massive parallel sequencing in animal genetics: wherefroms and wheretos

scientific article

Porcine colonization of the Americas: a 60k SNP story.

scientific article published on 19 December 2012

Whole-genome sequence analysis reveals differences in population management and selection of European low-input pig breeds

scientific article

Genome data from a sixteenth century pig illuminate modern breed relationships

scientific article

Test for positional candidate genes for body composition on pig chromosome 6.

scientific article published on July 2002

From SNP co-association to RNA co-expression: novel insights into gene networks for intramuscular fatty acid composition in porcine

scientific article

Unexpected high polymorphism at the FABP4 gene unveils a complex history for pig populations

scientific article

Effect of the porcine IGF2-intron3-G3072A substitution in an outbred Large White population and in an Iberian × Landrace cross1

scientific article published on 01 December 2005

Fine mapping of complex trait genes combining pedigree and linkage disequilibrium information: a Bayesian unified framework.

scientific article

A non-synonymous mutation in a conserved site of theMTTPgene is strongly associated with protein activity and fatty acid profile in pigs

scientific article published on 03 June 2009

On growth, fatness, and form: a further look at porcine chromosome 4 in an Iberian x Landrace cross.

scientific article published in May 2005

Characterization of the porcine acyl-CoA synthetase long-chain 4 gene and its association with growth and meat quality traits.

scientific article published in June 2006

Characterization of the porcine FABP5 gene and its association with the FAT1 QTL in an Iberian by Landrace cross

article

A quantitative trait locus genome scan for porcine muscle fiber traits reveals overdominance and epistasis1

scientific article published on 18 July 2008

Can Deep Learning Improve Genomic Prediction of Complex Human Traits?

article

Partial short-read sequencing of a highly inbred Iberian pig and genomics inference thereof

scientific article

Adipocyte fatty-acid binding protein is closely associated to the porcine FAT1 locus on chromosome 4.

scientific article published in November 2006

Assessment of genetic variation explained by markers for wool traits in sheep via a segment mapping approach

scientific article published on 01 July 2001

Genetical genomics: use all data

scientific article published on 12 March 2007

A deep catalog of autosomal single nucleotide variation in the pig

scientific article

Impact of breed and sex on porcine endocrine transcriptome: a bayesian biometrical analysis

scientific article

Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds

scientific article published on 28 February 2018

Genomic relationships computed from either next-generation sequence or array SNP data.

scientific article

Nucleotide variability and linkage disequilibrium patterns at the porcineFABP5gene

article

Genetic analysis of discrete reproductive traits in sheep using linear and nonlinear models: II. Goodness of fit and predictive ability

scientific article published on 01 January 1997

Large-scale SNP genotyping in crosses between outbred lines: how useful is it?

scientific article published on 21 October 2009

A Genome Wide Detection of Quantitative Trait Loci on Pig Maternal Infanticide Behavior in a Large Scale White Duroc × Erhualian Resource Population

article

List of works by Miguel Perez-Enciso

Analyses of pig genomes provide insight into porcine demography and evolution

Genome-wide footprints of pig domestication and selection revealed through massive parallel sequencing of pooled DNA.

Copy number variation in the porcine genome inferred from a 60 k SNP BeadChip

Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data.

Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition

Qxpak: a versatile mixed model application for genetical genomics and QTL analyses

Pig domestication and human-mediated dispersal in western Eurasia revealed through ancient DNA and geometric morphometrics

Integrating Y-chromosome, mitochondrial, and autosomal data to analyze the origin of pig breeds

Exploring the gonad transcriptome of two extreme male pigs with RNA-seq

Sequence- vs. chip-assisted genomic selection: accurate biological information is advised.

Many QTLs with minor additive effects are associated with a large difference in growth between two selection lines in chickens

Population genomics from pool sequencing

Qxpak.5: old mixed model solutions for new genomics problems

A QTL on pig chromosome 4 affects fatty acid metabolism: evidence from an Iberian by Landrace intercross

A QTL for intramuscular fat and backfat thickness is located on porcine Chromosome 6

Conservation genomic analysis of domestic and wild pig populations from the Iberian Peninsula

Genome-wide association study for intramuscular fatty acid composition in an Iberian × Landrace cross

QTL mapping for growth and carcass traits in an Iberian by Landrace pig intercross: additive, dominant and epistatic effects

Quantitative trait locus mapping for meat quality traits in an Iberian x Landrace F2 pig population

Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs

Detection of QTL affecting fatty acid composition in the pig.

Transcriptome architecture across tissues in the pig

Resequencing studies of nonmodel organisms using closely related reference genomes: optimal experimental designs and bioinformatics approaches for population genomics.

Massive parallel sequencing in animal genetics: wherefroms and wheretos

Porcine colonization of the Americas: a 60k SNP story.

Whole-genome sequence analysis reveals differences in population management and selection of European low-input pig breeds

Genome data from a sixteenth century pig illuminate modern breed relationships

Test for positional candidate genes for body composition on pig chromosome 6.

From SNP co-association to RNA co-expression: novel insights into gene networks for intramuscular fatty acid composition in porcine

Unexpected high polymorphism at the FABP4 gene unveils a complex history for pig populations

Effect of the porcine IGF2-intron3-G3072A substitution in an outbred Large White population and in an Iberian × Landrace cross1

Fine mapping of complex trait genes combining pedigree and linkage disequilibrium information: a Bayesian unified framework.

A non-synonymous mutation in a conserved site of theMTTPgene is strongly associated with protein activity and fatty acid profile in pigs

On growth, fatness, and form: a further look at porcine chromosome 4 in an Iberian x Landrace cross.

Characterization of the porcine acyl-CoA synthetase long-chain 4 gene and its association with growth and meat quality traits.

Characterization of the porcine FABP5 gene and its association with the FAT1 QTL in an Iberian by Landrace cross

A quantitative trait locus genome scan for porcine muscle fiber traits reveals overdominance and epistasis1

Can Deep Learning Improve Genomic Prediction of Complex Human Traits?

Partial short-read sequencing of a highly inbred Iberian pig and genomics inference thereof

Adipocyte fatty-acid binding protein is closely associated to the porcine FAT1 locus on chromosome 4.

Assessment of genetic variation explained by markers for wool traits in sheep via a segment mapping approach

Genetical genomics: use all data

A deep catalog of autosomal single nucleotide variation in the pig

Impact of breed and sex on porcine endocrine transcriptome: a bayesian biometrical analysis

Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds

Genomic relationships computed from either next-generation sequence or array SNP data.

Nucleotide variability and linkage disequilibrium patterns at the porcineFABP5gene

Genetic analysis of discrete reproductive traits in sheep using linear and nonlinear models: II. Goodness of fit and predictive ability

Large-scale SNP genotyping in crosses between outbred lines: how useful is it?

A Genome Wide Detection of Quantitative Trait Loci on Pig Maternal Infanticide Behavior in a Large Scale White Duroc × Erhualian Resource Population