List of works - Pascale Gaudet

A GO catalogue of human DNA-binding transcription factors

scientific article published on 28 October 2020

A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17.

scientific article

A community of biocurators

A general purpose method for extracting RNA from Dictyostelium cells.

scientific article published in January 2007

A new bioinformatics tool to help assess the significance of BRCA1 variants.

scientific article published on 11 July 2018

A reliable general purpose method for extracting genomic DNA from Dictyostelium cells

scientific article published on 01 January 2007

Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt

scientific article published on 01 January 2018

Agenda of the “BioSharing workshop – Bringing catalogues of bio-resource and standards together”

Agenda of the “BioSharing workshop – Unifying Bio-Resources Descriptors”

An anatomy ontology to represent biological knowledge in Dictyostelium discoideum

scientific article

Annotation of functional impact of voltage-gated sodium channel mutations

scientific article

Annotation of gene product function from high-throughput studies using the Gene Ontology

article

Best Practices in Manual Annotation with the Gene Ontology

scientific article published on January 2017

BioCreative III interactive task: an overview

scientific article

BioDBcore: a community-defined information specification for biological databases

Biocuration Virtual Issue 2012

scientific article published on 20 March 2012

Biocurators and biocuration: surveying the 21st century challenges

scientific article

Changes in mitochondrial carriers exhibit stress-specific signatures in INS-1Eβ-cells exposed to glucose versus fatty acids

scientific article

Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum

scientific article

Correction: GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training

scientific article published on 14 May 2015

DATABASE, The Journal of Biological Databases and Curation, is now the official journal of the International Society for Biocuration.

scientific article published on 6 December 2013

DNA damage signaling and repair in Dictyostelium discoideum

scientific article

Deep Question Answering for protein annotation

scientific article

Diabetogenic milieus induce specific changes in mitochondrial transcriptome and differentiation of human pancreatic islets.

scientific article

Dictyostelium discoideum: The Social Ameba

scientific article published on 01 December 2008

ECO, the Evidence & Conclusion Ontology: community standard for evidence information

scholarly article

Extraction of DNA from dictyostelium

scientific article published on 01 December 2008

Extraction of RNA from dictyostelium

scientific article published on 01 December 2008

GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training

scientific article published on 9 April 2015

Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems

scientific article published on 01 October 2019

Gene Ontology: Pitfalls, Biases, and Remedies

scientific article published on January 2017

Generation, annotation, and analysis of an extensive Aspergillus niger EST collection

scientific article published on 2 February 2006

Growth and maintenance of dictyostelium cells

scientific article published on 01 December 2008

ICEPO: the ion channel electrophysiology ontology

scientific article published on 7 April 2016

Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources.

scientific article

Kinases and cancer

scientific article published in March 2018

Large-scale inference of gene function through phylogenetic annotation of Gene Ontology terms: case study of the apoptosis and autophagy cellular processes

scientific article published on 26 December 2016

Making permanent stocks of dictyostelium

scientific article published on 01 December 2008

Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop

scientific article (publication date: 25 December 2010)

Meeting Report: BioSharing at ISMB 2010

scientific article (publication date: 4 December 2010)

Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins

scientific article

Mitochondrial carrier family: repertoire and peculiarities of the cellular slime mould Dictyostelium discoideum

scientific article published on 12 March 2007

Multicellular development of dictyostelium

scientific article published on 01 December 2008

Overview of the BioCreative VI text-mining services for Kinome Curation Track

scientific article published on 01 January 2018

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

scientific article

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

scientific article

Primer on the Gene Ontology.

scientific article published on January 2017

Protocols for growth and development of Dictyostelium discoideum

article

Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression

scientific article

Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference

scientific article (publication date: 2012)

Selection of dictyostelium transformants

scientific article published on 01 December 2008

SynGO: An Evidence-Based, Expert-Curated Knowledge Base for the Synapse

scientific article published on 03 June 2019

Target discovery from protein databases: challenges for curation

scientific article (publication date: July 2015)

Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns

scientific article published on 02 September 2020

The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations

scientific article

The Feature Viewer: A visualization tool for positional annotations on a sequence

scientific article published on 27 January 2020

The Gene Ontology knowledgebase in 2023

scientific article published in 2023

The Gene Ontology’s Reference Genome Project: *A Unified Framework for Functional Annotation across Species

article published in 2009

The Gene Ontology’s Reference Genome Project: *A Unified Framework for Functional Annotation across Species

The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST)

scientific article published on 30 June 2020

The health care and life sciences community profile for dataset descriptions

scientific article (publication date: 2016)

The health care and life sciences community profile for dataset descriptions

article published in 2016

The neXtProt knowledgebase in 2020: data, tools and usability improvements

scientific article published on 01 January 2020

The neXtProt knowledgebase on human proteins: 2017 update

scientific article (publication date: 29 November 2016)

The neXtProt knowledgebase on human proteins: current status

scientific article

Toward interoperable bioscience data

scientific article (publication date: 27 January 2012)

Towards BioDBcore: a community-defined information specification for biological databases

scientific article

Towards BioDBcore: a community-defined information specification for biological databases

scientific article (publication date: 2011)

Transformation of Dictyostelium discoideum with plasmid DNA.

scientific article published in January 2007

Transformation of dictyostelium with plasmid DNA by calcium phosphate precipitation

scientific article published on 01 December 2008

Transformation of dictyostelium with plasmid DNA by electroporation

scientific article published on 01 December 2008

Triage by ranking to support the curation of protein interactions

scientific article

dictyBase and the Dicty Stock Center

scientific article published on January 2006

dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa

scientific article

dictyBase, the model organism database for Dictyostelium discoideum

scientific article

dictyBase--a Dictyostelium bioinformatics resource update

scientific article (publication date: 2009)

dictyBase: a new Dictyostelium discoideum genome database

scientific article

neXtA5: accelerating annotation of articles via automated approaches in neXtProt

scientific article

neXtProt: a knowledge platform for human proteins

scientific article

neXtProt: organizing protein knowledge in the context of human proteome projects

scientific article

List of works by Pascale Gaudet

A GO catalogue of human DNA-binding transcription factors

A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17.

A community of biocurators

A general purpose method for extracting RNA from Dictyostelium cells.

A new bioinformatics tool to help assess the significance of BRCA1 variants.

A reliable general purpose method for extracting genomic DNA from Dictyostelium cells

Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt

Agenda of the “BioSharing workshop – Bringing catalogues of bio-resource and standards together”

Agenda of the “BioSharing workshop – Unifying Bio-Resources Descriptors”

Agenda of the “BioSharing workshop – Unifying Bio-Resources Descriptors”

An anatomy ontology to represent biological knowledge in Dictyostelium discoideum

Annotation of functional impact of voltage-gated sodium channel mutations

Annotation of gene product function from high-throughput studies using the Gene Ontology

Best Practices in Manual Annotation with the Gene Ontology

BioCreative III interactive task: an overview

BioDBcore: a community-defined information specification for biological databases

Biocuration Virtual Issue 2012

Biocurators and biocuration: surveying the 21st century challenges

Changes in mitochondrial carriers exhibit stress-specific signatures in INS-1Eβ-cells exposed to glucose versus fatty acids

Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum

Correction: GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training

DATABASE, The Journal of Biological Databases and Curation, is now the official journal of the International Society for Biocuration.

DNA damage signaling and repair in Dictyostelium discoideum

Deep Question Answering for protein annotation

Diabetogenic milieus induce specific changes in mitochondrial transcriptome and differentiation of human pancreatic islets.

Dictyostelium discoideum: The Social Ameba

ECO, the Evidence & Conclusion Ontology: community standard for evidence information

Extraction of DNA from dictyostelium

Extraction of RNA from dictyostelium

GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training

Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems

Gene Ontology: Pitfalls, Biases, and Remedies

Generation, annotation, and analysis of an extensive Aspergillus niger EST collection

Growth and maintenance of dictyostelium cells

ICEPO: the ion channel electrophysiology ontology

Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources.

Kinases and cancer

Large-scale inference of gene function through phylogenetic annotation of Gene Ontology terms: case study of the apoptosis and autophagy cellular processes

Making permanent stocks of dictyostelium

Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop

Meeting Report: BioSharing at ISMB 2010

Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins

Mitochondrial carrier family: repertoire and peculiarities of the cellular slime mould Dictyostelium discoideum

Multicellular development of dictyostelium

Overview of the BioCreative VI text-mining services for Kinome Curation Track

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Primer on the Gene Ontology.

Protocols for growth and development of Dictyostelium discoideum

Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression

Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference

Selection of dictyostelium transformants

SynGO: An Evidence-Based, Expert-Curated Knowledge Base for the Synapse

Target discovery from protein databases: challenges for curation

Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns

The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations

The Feature Viewer: A visualization tool for positional annotations on a sequence

The Gene Ontology knowledgebase in 2023

The Gene Ontology’s Reference Genome Project: *A Unified Framework for Functional Annotation across Species

The Gene Ontology’s Reference Genome Project: *A Unified Framework for Functional Annotation across Species

The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST)

The health care and life sciences community profile for dataset descriptions

The health care and life sciences community profile for dataset descriptions

The health care and life sciences community profile for dataset descriptions

The health care and life sciences community profile for dataset descriptions

The neXtProt knowledgebase in 2020: data, tools and usability improvements

The neXtProt knowledgebase on human proteins: 2017 update

The neXtProt knowledgebase on human proteins: current status

Toward interoperable bioscience data

Towards BioDBcore: a community-defined information specification for biological databases

Towards BioDBcore: a community-defined information specification for biological databases

Transformation of Dictyostelium discoideum with plasmid DNA.

Transformation of dictyostelium with plasmid DNA by calcium phosphate precipitation

Transformation of dictyostelium with plasmid DNA by electroporation

Triage by ranking to support the curation of protein interactions

dictyBase and the Dicty Stock Center

dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa

dictyBase, the model organism database for Dictyostelium discoideum

dictyBase--a Dictyostelium bioinformatics resource update