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List of works by Hanspeter Herzel

3D-Image analysis platform monitoring relocation of pluripotency genes during reprogramming.

scientific article published on 23 June 2011

A Robust Model for Circadian Redox Oscillations ⬇️

scientific article published on 13 May 2019

A mesoscale model of G1/S phase transition in liver regeneration

scientific article published in February 2008

A minimal circadian clock model.

scientific article published on January 2007

A model of the mammalian circadian oscillator including the REV-ERBalpha module.

scientific article published in January 2004

A systems biological approach suggests that transcriptional feedback regulation by dual-specificity phosphatase 6 shapes extracellular signal-related kinase activity in RAS-transformed fibroblasts

scientific article published on 12 January 2009

A theoretical study on seasonality

scientific article published on 7 May 2015

Aggregation in Huntington's disease: insights through modelling

scientific article published in January 2005

Alternans and 2:1 rhythms in an ionic model of heart cells

scientific article published in June 2002

Amplitude Effects Allow Short Jet Lags and Large Seasonal Phase Shifts in Minimal Clock Models

scientific article published on 21 January 2020

Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis

scientific article published on 29 February 2008

Assembly of a comprehensive regulatory network for the mammalian circadian clock: a bioinformatics approach

scientific article published on 6 May 2015

Author Correction: The choroid plexus is an important circadian clock component

scientific article published on 20 November 2019

Beta-TrCP1-mediated degradation of PERIOD2 is essential for circadian dynamics

scientific article published on October 2007

Beyond spikes: Multiscale computational analysis of in vivo long-term recordings in the cockroach circadian clock

scientific article published on 01 September 2019

Bifurcation analysis of the regulatory modules of the mammalian G1/S transition

scientific article published in July 2004

Bifurcations and chaos in register transitions of excised larynx experiments

scientific article published in March 2008

Biological profiling of gene groups utilizing Gene Ontology

scientific article

Biomechanical modeling of register transitions and the role of vocal tract resonators

scientific article

Biomechanics and control of vocalization in a non-songbird

scientific article

Calls out of chaos: the adaptive significance of nonlinear phenomena in mammalian vocal production

article

Circadian desynchronization ⬇️

scientific article published on November 17, 2010

Circadian rhythms in septic shock patients

scientific article published in 2021

Clocks in the Wild: Entrainment to Natural Light

scientific article published on 02 April 2020

Coherency of circadian rhythms in the SCN is governed by the interplay of two coupling factors

Comparison of biomechanical modeling of register transitions and voice instabilities with excised larynx experiments

scientific article published on 01 July 2007

Comparison of human protein-protein interaction maps.

scientific article

Competing docking interactions can bring about bistability in the MAPK cascade

scientific article published on 25 May 2007

Conceptual Models of Entrainment, Jet Lag, and Seasonality

scientific article published on 28 April 2020

Corrigendum: A Theoretical Study on Seasonality

scientific article published on 16 July 2015

Coupling Controls the Synchrony of Clock Cells in Development and Knockouts

scientific article

Coupling governs entrainment range of circadian clocks

scientific article

DNA motifs and sequence periodicities.

scientific article published in January 2006

Death of neuronal clusters contributes to variance of age at onset in Huntington's disease

scientific article published on 14 January 2006

Detecting synchronizations in an asymmetric vocal fold model from time series data

scientific article published in March 2005

Differential effects of PER2 phosphorylation: molecular basis for the human familial advanced sleep phase syndrome (FASPS)

scientific article

Dissecting the action of an evolutionary conserved non-coding region on renin promoter activity

scientific article

Effects of sequestration on signal transduction cascades

scientific article published in March 2006

Elucidating the adaptation and temporal coordination of metabolic pathways using in-silico evolution

scientific article published on 15 January 2014

Entrainment in a model of the mammalian circadian oscillator

scientific article published on 01 February 2005

Excitability in the p53 network mediates robust signaling with tunable activation thresholds in single cells

scientific article

Experimental and computational analysis of transcriptional start sites in the cyanobacterium Prochlorococcus MED4.

scientific article

Extracting information from cDNA arrays

scientific article

Feedback Loops of the Mammalian Circadian Clock Constitute Repressilator.

scientific article

Functioning and robustness of a bacterial circadian clock

scientific article

Gating characteristics control glutamate receptor distribution and trafficking in vivo

scientific article published on 14 August 2014

Global analysis of host tissue gene expression in the invasive front of colorectal liver metastases

scientific article published on January 2006

Global parameter search reveals design principles of the mammalian circadian clock

scientific article

Graph-theoretical comparison reveals structural divergence of human protein interaction networks

scientific article published on 01 January 2007

Guidelines for Genome-Scale Analysis of Biological Rhythms

scientific article published on November 2017

HOMGL-comparing genelists across species and with different accession numbers

scientific article published on January 2004

High reproducibility of large-gel two-dimensional electrophoresis

scientific article published in September 2004

High-accuracy determination of internal circadian time from a single blood sample

article by Nicole Wittenbrink et al published 31 August 2018 in Journal of Clinical Investigation

How robust are switches in intracellular signaling cascades?

scientific article published in December 2003

How to achieve fast entrainment? The timescale to synchronization

scientific article

HuSiDa--the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells

scientific article

Human Chronotypes from a Theoretical Perspective ⬇️

scientific article published on March 27, 2013

IL-2 Expression in Activated Human Memory FOXP3(+) Cells Critically Depends on the Cellular Levels of FOXP3 as Well as of Four Transcription Factors of  T Cell Activation.

scientific article published on 27 August 2012

Identification of Novel Nuclear Factor of Activated T Cell (NFAT)-associated Proteins in T Cells

scientific article published on 16 September 2016

Identification of Y-box binding protein 1 as a core regulator of MEK/ERK pathway-dependent gene signatures in colorectal cancer cells

scientific article

Identification of cyanobacterial non-coding RNAs by comparative genome analysis

scientific article published on 17 August 2005

Identification of distinct antibody epitopes and mimotopes from a peptide array of 5520 randomly generated sequences

scientific article

Inferring combinatorial regulation of transcription in silico

scientific article

Kinetic mechanisms for overexpression insensitivity and oncogene cooperation.

scientific article published on 4 December 2008

Live-cell imaging of circadian clock protein dynamics in CRISPR-generated knock-in cells

scientific article published on 18 June 2021

Lymphocyte Circadian Clocks Control Lymph Node Trafficking and Adaptive Immune Responses

scientific article published on 6 January 2017

Mathematical Modeling Identifies Inhibitors of Apoptosis (IAPs) as Mediators of Positive Feedback and Bistability

scientific article published on 28 July 2006

Mathematical modeling identifies inhibitors of apoptosis as mediators of positive feedback and bistability

scientific article

Mathematical models in mammalian cell biology

scientific article published on 15 July 2008

Measuring Relative Coupling Strength in Circadian Systems

scientific article published in December 2017

Measuring similarities between transcription factor binding sites

scientific article

Mechanism for 12 hr rhythm generation by the circadian clock

scientific article published on 11 April 2013

Mechanisms Generating Ultrasensitivity, Bistability, and Oscillations in Signal Transduction

Mining for novel candidate clock genes in the circadian regulatory network

scientific article published on 14 November 2015

Modeling IL-2 gene expression in human regulatory T cells.

scientific article published in January 2008

Modeling feedback loops of the Mammalian circadian oscillator

scientific article published on 3 September 2004

Modelling transcriptional feedback loops: the role of Gro/TLE1 in Hes1 oscillations

scientific article published in May 2006

Molecular insights into human daily behavior

scholarly article

Moran's I quantifies spatio-temporal pattern formation in neural imaging data

scientific article

Multiple random phosphorylations in clock proteins provide long delays and switches

scientific article published on 17 December 2020

Neither per, nor tim1, nor cry2 alone are essential components of the molecular circadian clockwork in the Madeira cockroach

scientific article published on 04 August 2020

Nonlinear analysis of irregular animal vocalizations.

scientific article published in June 2002

Nonlinear dynamics of the voice: Signal analysis and biomechanical modeling

scientific article published on 01 March 1995

Nonlinear phenomena in contemporary vocal music.

scientific article

Nonlinear phenomena in models of the circadian clock

scientific article published on 30 September 2020

Periodicities of 10-11bp as indicators of the supercoiled state of genomic DNA.

scientific article published in October 2004

Phasegram Analysis of Vocal Fold Vibration Documented With Laryngeal High-speed Video Endoscopy.

scientific article

Positive feedback promotes oscillations in negative feedback loops

scientific article

Prediction of cis-regulatory elements of coregulated genes

scientific article published in January 2004

Prediction of regulatory transcription factors in T helper cell differentiation and maintenance.

scientific article published in January 2010

Promoter analysis of Mammalian clock controlled genes

scientific article published in January 2007

Quantification of circadian rhythms in single cells

scientific article

Quantitative analysis of circadian single cell oscillations in response to temperature.

scientific article published on 2 January 2018

Quantitative analysis of ultrasensitive responses

scientific article published on August 2005

Ras-mediated deregulation of the circadian clock in cancer

scientific article

Recurrent design patterns in the feedback regulation of the mammalian signalling network

scientific article published on 6 May 2008

Regulation of clock-controlled genes in mammals

scientific article

Regulation of mammalian cell cycle progression in the regenerating liver.

scientific article published on 27 May 2011

Regulatory elements of marine cyanobacteria.

scientific article published in January 2007

Repeats and correlations in human DNA sequences

scientific article published on 26 June 2003

Reverse engineering a hierarchical regulatory network downstream of oncogenic KRAS.

scientific article

Searching Novel Clock Genes Using RNAi-Based Screening

scientific article published on 01 January 2021

Sequence-related human proteins cluster by degree of evolutionary conservation

scientific article published on 17 November 2004

Simple Kinetic Models in Molecular Chronobiology

scientific article published on 01 January 2021

Small RNAs establish delays and temporal thresholds in gene expression

scientific article

Spontaneous synchronization of coupled circadian oscillators

scientific article

Stable IL-2 decision making by endogenous c-Fos amounts in peripheral memory T-helper cells.

scientific article published on 3 April 2012

Synchronization-Induced Rhythmicity of Circadian Oscillators in the Suprachiasmatic Nucleus

scientific article published on 28 February 2007

Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus

scientific article

Systematic functional assessment of human protein-protein interaction maps.

scientific article published on January 2006

Systems biologists seek fuller integration of systems biology approaches in new cancer research programs

scientific article

The choroid plexus is an important circadian clock component.

scientific article published on 14 March 2018

The interplay of cis-regulatory elements rules circadian rhythms in mouse liver

scientific article

The structural code of cyanobacterial genomes.

scientific article

Timing of circadian genes in mammalian tissues.

scientific article published on 22 July 2014

Timing of neuropeptide coupling determines synchrony and entrainment in the mammalian circadian clock

scientific article

Transcription factor co-occupied regions in the murine genome constitute T-helper-cell subtype-specific enhancers.

scientific article

Tumor growth rate determines the timing of optimal chronomodulated treatment schedules

scientific article

Tuning the mammalian circadian clock: robust synergy of two loops.

scientific article

Tuning the phase of circadian entrainment

scientific article

ULTRASENSITIZATION Switch-like Regulation of Cellular Signalling by Transcriptional Induction

scientific article published on 28 September 2005

Ultradian Rhythms in the Transcriptome of Neurospora crassa

Ultrasensitization: switch-like regulation of cellular signaling by transcriptional induction

scientific article

UniHI: an entry gate to the human protein interactome

scientific article

Visualization of system dynamics using phasegrams

scientific article published on 22 May 2013

Weak coupling between intracellular feedback loops explains dissociation of clock gene dynamics

scientific article published on 12 September 2019

Why do cells cycle with a 24 hour period?

scientific article published in January 2006

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