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List of works by Tatiana Giraud

A congruence index for testing topological similarity between trees

scientific article published on 12 October 2007

A genome scan of diversifying selection in Ophiocordyceps zombie-ant fungi suggests a role for enterotoxins in co-evolution and host specificity

scientific article published in 2018

A microRNA allele that emerged prior to apple domestication may underlie fruit size evolution.

scientific article published on 10 September 2015

A new cheese population in <i>Penicillium roqueforti</i> and adaptation of the five populations to their ecological niche

scientific article published in 2023

A road map for molecular ecology

scientific article published on May 2013

Adaptive Horizontal Gene Transfers between Multiple Cheese-Associated Fungi

scientific article

Allee effects in ants

scientific article

Ancient trans-specific polymorphism at pheromone receptor genes in basidiomycetes

scientific article (publication date: 2009)

Antagonistic pleiotropy may help population-level selection in maintaining genetic polymorphism for transmission rate in a model phytopathogenic fungus

article

Anther-smut fungi from more contaminated sites in Chernobyl show lower infection ability and lower viability following experimental irradiation

scientific article published on 26 May 2020

Anthropogenic and natural drivers of gene flow in a temperate wild fruit tree: a basis for conservation and breeding programs in apples

scientific article

Assessing the performance of single-copy genes for recovering robust phylogenies.

scientific article published in August 2008

Bacterial cooperation controlled by mobile elements: kin selection versus infectivity

scientific article published on 27 July 2011

Biodentine Reduces Tumor Necrosis Factor Alpha-induced TRPA1 Expression in Odontoblastlike Cells.

scientific article published on 11 February 2016

Biological globalisation: bioinvasions and their impacts on nature, the economy and public health

article

Blue cheese-making has shaped the population genetic structure of the mould Penicillium roqueforti

scientific article

Can Pulp Fibroblasts Kill Cariogenic Bacteria? Role of Complement Activation

scientific article

Challenges of microsatellite isolation in fungi

scientific article published on 02 June 2007

Chaos of Rearrangements in the Mating-Type Chromosomes of the Anther-Smut Fungus Microbotryum lychnidis-dioicae.

scientific article

Characterization of Bc-hch, the Botrytis cinerea homolog of the Neurospora crassahet-c vegetative incompatibility locus, and its use as a population marker.

scientific article published on March 2003

Characterization of nine polymorphic microsatellite loci in the fungus Botrytis cinerea (Ascomycota)

scientific article published in 2002

Co-occurrence among three divergent plant-castrating fungi in the same Silene host species

article

Co-occurrence and hybridization of anther-smut pathogens specialized on Dianthus hosts.

scientific article

Common sex-linked deleterious alleles in a plant parasitic fungus alter infection success but show no pleiotropic advantage

article

Competition, cooperation among kin, and virulence in multiple infections

scientific article

Congruent population genetic structures and divergence histories in anther-smut fungi and their host plants Silene italica and the Silene nutans species complex

scientific article published on 08 March 2020

Contrasted patterns in mating-type chromosomes in fungi: hotspots versus coldspots of recombination

scientific article

Cophylogeny of the anther smut fungi and their caryophyllaceous hosts: prevalence of host shifts and importance of delimiting parasite species for inferring cospeciation

scientific article (publication date: 27 March 2008)

Cospeciation vs host-shift speciation: methods for testing, evidence from natural associations and relation to coevolution

scientific article

Crop-to-wild gene flow and its fitness consequences for a wild fruit tree: Towards a comprehensive conservation strategy of the wild apple in Europe

scientific article published on 26 December 2016

Degeneration of the nonrecombining regions in the mating-type chromosomes of the anther-smut fungi

scientific article

Deleterious effects of recombination and possible nonrecombinatorial advantages of sex in a fungal model

scientific article

Distinct invasion sources of common ragweed (Ambrosia artemisiifolia) in Eastern and Western Europe

article

Distribution and population structure of the anther smut Microbotryum silenes-acaulis parasitizing an arctic-alpine plant

scientific article published on 15 December 2015

Distribution of the anther-smut pathogen Microbotryum on species of the Caryophyllaceae

scientific article

Do black truffles avoid sexual harassment by linking mating type and vegetative incompatibility?

scientific article

Do deletions of Mos1-like elements occur randomly in the Drosophilidae family?

scientific article published in February 2002

EVOLUTION OF REPRODUCTIVE ISOLATION WITHIN A PARASITIC FUNGAL SPECIES COMPLEX

scientific article published on 01 July 2007

EXPERIMENTAL DEMONSTRATION OF A CAUSAL RELATIONSHIP BETWEEN HETEROGENEITY OF SELECTION AND GENETIC DIFFERENTIATION IN QUANTITATIVE TRAITS

EXPERIMENTAL DEMONSTRATION OF A CAUSAL RELATIONSHIP BETWEEN HETEROGENEITY OF SELECTION AND GENETIC DIFFERENTIATION IN QUANTITATIVE TRAITS

scientific article published on 01 July 2004

Emergence of novel fungal pathogens by ecological speciation: importance of the reduced viability of immigrants

scientific article published on 4 October 2011

Evolution of pathogenicity traits in the apple scab fungal pathogen in response to the domestication of its host

scientific article

Evolution of supercolonies: the Argentine ants of southern Europe ⬇️

scientific article

Evolution of uni- and bifactorial sexual compatibility systems in fungi

scientific article published on 10 July 2013

Evolutionary strata on young mating-type chromosomes despite the lack of sexual antagonism

scientific article

Existence of a pattern of reproductive character displacement in Homobasidiomycota but not in Ascomycota

scientific article published on 23 February 2008

Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes

scientific article

Extensive divergence between mating-type chromosomes of the anther-smut fungus

scientific article

FUNYBASE: a FUNgal phYlogenomic dataBASE

scientific article published on 27 October 2008

Fertility depression among cheese-making Penicillium roqueforti strains suggests degeneration during domestication

scientific article (publication date: September 2016)

Finding candidate genes under positive selection in Non-model species: examples of genes involved in host specialization in pathogens

scientific article

Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes.

scientific article

Genes under positive selection in a model plant pathogenic fungus, Botrytis

scientific article

Genetic characterisation of Botrytis cinerea populations in Chile

article

Genetic differentiation of neutral markers and quantitative traits in predominantly selfing metapopulations: confronting theory and experiments with Arabidopsis thaliana

scientific article published on 01 February 2006

Genetic diversity in natural populations: a fundamental component of plant-microbe interactions

scientific article published on 07 March 2008

Genetic signature of a range expansion and leap-frog event after the recent invasion of Europe by the grapevine downy mildew pathogen Plasmopara viticola.

scientific article

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea

scientific article

Genomic basis of the differences between cider and dessert apple varieties.

scientific article published on 13 June 2015

Glacial refugia in pathogens: European genetic structure of anther smut pathogens on Silene latifolia and Silene dioica

scientific article (publication date: 16 December 2010)

Having sex, yes, but with whom? Inferences from fungi on the evolution of anisogamy and mating types

scientific article published on 16 August 2010

High genetic diversity in French invasive populations of common ragweed, Ambrosia artemisiifolia, as a result of multiple sources of introduction

scientific article published in December 2005

High variability of mitochondrial gene order among fungi

scientific article published on February 2014

History of the invasion of the anther smut pathogen on Silene latifolia in North America

scientific article

Homage to Felsenstein 1981, or why are there so few/many species?

scientific article published in 2021

Host phenology and geography as drivers of differentiation in generalist fungal mycoparasites

scientific article

Hybrid sterility and inviability in the parasitic fungal species complex Microbotryum

scientific article published on 18 February 2009

Impact of elicited mood on movement expressivity during a fitness task

scientific article

Independent domestication events in the blue-cheese fungus Penicillium roqueforti

scientific article published on 20 January 2020

Independent domestications of cultivated tree peonies from different wild peony species

scientific article published on 13 November 2013

Induction of sexual reproduction and genetic diversity in the cheese fungus Penicillium roqueforti

scientific article

Influence of multiple infection and relatedness on virulence: disease dynamics in an experimental plant population and its castrating parasite

scientific article

Insights into Penicillium roqueforti Morphological and Genetic Diversity

scientific article published on 19 June 2015

Intragenome Diversity of Gene Families Encoding Toxin-like Proteins in Venomous Animals

scientific article published on 19 August 2016

Introduction: microbial local adaptation: insights from natural populations, genomics and experimental evolution

scientific article published in April 2017

Isolation of 44 polymorphic microsatellite loci in three host races of the phytopathogenic fungus Microbotryum violaceum

scientific article published in 2002

Isolation of eight polymorphic microsatellite loci, using an enrichment protocol, in the phytopathogenic fungus Fusarium culmorum

article published in 2002

Isolation of twelve microsatellite loci, using an enrichment protocol, in the phytopathogenic fungus Puccinia striiformis f.sp. tritici

scientific article published in 2002

Lineage Selection and the Maintenance of Sex.

scientific article

Linkage to the mating-type locus across the genus Microbotryum: insights into nonrecombining chromosomes

scientific article

Linking the emergence of fungal plant diseases with ecological speciation

scientific article

Little Evidence of Antagonistic Selection in the Evolutionary Strata of Fungal Mating-Type Chromosomes (Microbotryum lychnidis-dioicae)

scientific article published on 05 June 2019

Lower prevalence but similar fitness in a parasitic fungus at higher radiation levels near Chernobyl

scientific article published on 2 May 2016

MASSIF-1: a beamline dedicated to the fully automatic characterization and data collection from crystals of biological macromolecules

scientific article

Maintenance of fungal pathogen species that are specialized to different hosts: allopatric divergence and introgression through secondary contact

scientific article published on 13 September 2010

Maintenance of sex-linked deleterious alleles by selfing and group selection in metapopulations of the phytopathogenic fungus Microbotryum violaceum.

scientific article published on 14 March 2005

Mating System of the Anther Smut Fungus Microbotryum violaceum: Selfing under Heterothallism

scientific article (publication date: 15 February 2008)

Maximized virulence in a sterilizing pathogen: the anther-smut fungus and its co-evolved hosts

scientific article

Microsatellite loci to recognize species for the cheese starter and contaminating strains associated with cheese manufacturing

scientific article

Migration patterns and changes in population biology associated with the worldwide spread of the oilseed rape pathogen Leptosphaeria maculans.

scientific article published on 22 March 2012

Multiple convergent supergene evolution events in mating-type chromosomes

scientific article

Multiple infections by the anther smut pathogen are frequent and involve related strains

scientific article

Multiple infections, relatedness and virulence in the anther-smut fungus castrating Saponaria plants

Multiple recent horizontal transfers of a large genomic region in cheese making fungi

scientific article

NATIVE SUPERCOLONIES OF UNRELATED INDIVIDUALS IN THE INVASIVE ARGENTINE ANT

article

Native supercolonies of unrelated individuals in the invasive Argentine ant.

scientific article published in April 2006

New insight into the history of domesticated apple: secondary contribution of the European wild apple to the genome of cultivated varieties

scientific article published in 2012

New insights into the history of domesticated and wild apricots and its contribution to Plum pox virus resistance

scientific article published on 2 August 2016

No Evidence of Reproductive Character Displacement between Two Sister Fungal Species Causing Anther Smut Disease in Silene

article

Nuclear and chloroplast microsatellites show multiple introductions in the worldwide invasion history of common ragweed, Ambrosia artemisiifolia ⬇️

scientific article

PERMANENT GENETIC RESOURCES: Isolation of 60 polymorphic microsatellite loci in EST libraries of four sibling species of the phytopathogenic fungal complex Microbotryum ⬇️

scientific article published on March 1, 2008

Partition of the Botrytis cinerea complex in France using multiple gene genealogies

scientific article published in November 2005

Pathogen Relatedness Affects the Prevalence of Within‐Host Competition

article

Pattern and causes of the establishment of the invasive bacterial potato pathogen Dickeya solani and of the maintenance of the resident pathogen D. dianthicola

scientific article published on 23 November 2020

Patterns of within population dispersal and mating of the fungus Microbotryum violaceum parasitising the plant Silene latifolia

article

Phylogenetic determinants of potential host shifts in fungal pathogens

scientific article

Phylogenetic evidence of host-specific cryptic species in the anther smut fungus

scientific article published in January 2007

Polymorphic Microsatellite Markers for the Tetrapolar Anther-Smut Fungus Microbotryum saponariae Based on Genome Sequencing

scientific article (publication date: 2016)

Polymorphic microsatellite DNA markers in the ant Gnamptogenys striatula

scientific article published in December 1999

Population genetics of fungal diseases of plants

scientific article published on September 2008

Population genomics of apricots unravels domestication history and adaptive events

scientific article published on 25 June 2021

Population structure and mating biology of the polygynous ponerine ant Gnamptogenys striatula in Brazil.

scientific article published in November 2000

Postglacial recolonization history of the European crabapple (Malus sylvestris Mill.), a wild contributor to the domesticated apple

scientific article

Pulp Vascularization during Tooth Development, Regeneration, and Therapy

scientific article published on 11 October 2016

Purifying selection after episodes of recurrent adaptive diversification in fungal pathogens

scientific article published on 10 April 2013

RFLP markers show genetic recombination in Botryotinia fuckeliana (Botrytis cinerea) and transposable elements reveal two sympatric species

scientific article published on 01 November 1997

Rapidly evolving genes in pathogens: methods for detecting positive selection and examples among fungi, bacteria, viruses and protists

scientific article published on 06 April 2009

Recombination suppression and evolutionary strata around mating-type loci in fungi: documenting patterns and understanding evolutionary and mechanistic causes

scientific article published on 28 October 2020

Repeat-induced point mutation and the population structure of transposable elements in Microbotryum violaceum

scientific article

RoboDiff: combining a sample changer and goniometer for highly automated macromolecular crystallography experiments

scientific article

Selfing Propensity under Choice Conditions in a Parasitic Fungus, Microbotryum violaceum, and Parameters Influencing Infection Success in Artificial Inoculations

scientific article published in 2005

Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus

scientific article published on 16 June 2015

Sex in Penicillium: combined phylogenetic and experimental approaches

scientific article

Sex in cheese: evidence for sexuality in the fungus Penicillium roqueforti

scientific article published in 2012

Sex, outcrossing and mating types: unsolved questions in fungi and beyond

scientific article published on 20 April 2012

Sex-specific effect of Microbotryum violaceum (Uredinales) spores on healthy plants of the gynodioecious Gypsophila repens (Caryophyllaceae).

scientific article published in May 2005

Sex‐Ratio Bias in Populations of the Phytopathogenic Fungus Microbotryum violaceum from Several Host Species

article

Sharing and reporting benefits from biodiversity research

scientific article published on 06 November 2020

Sibling competition arena: selfing and a competition arena can combine to constitute a barrier to gene flow in sympatry

scientific article published on 3 March 2012

Silene as a model system in ecology and evolution

scientific article

Somatic activity of the mariner transposable element in natural populations of Drosophila simulans

scientific article published in November 1996

Speciation in fungi

scientific article published on 14 February 2008

Speciation in parasites: host switching does not automatically lead to allopatry

scientific article published on 20 February 2006

Speciation: Selection against migrant pathogens: the immigrant inviability barrier in pathogens

scientific article published on 30 August 2006

Strong phylogeographic co-structure between the anther-smut fungus and its white campion host

scientific article published on 8 August 2016

Sympatric genetic differentiation of a generalist pathogenic fungus, Botrytis cinerea, on two different host plants, grapevine and bramble

scientific article published on 17 November 2007

Telomeric DNA of Botrytis cinerea: a useful tool for strain identification

scientific article published on 01 December 1997

Temporal isolation explains host-related genetic differentiation in a group of widespread mycoparasitic fungi

scientific article

The 'Dr Jekyll and Mr Hyde fungus': noble rot versus gray mold symptoms of Botrytis cinerea on grapes

scientific article

The anther smut disease on Gypsophila repens: a case of parasite sub-optimal performance following a recent host shift?

scientific article

The complex evolutionary history of apricots: Species divergence, gene flow and multiple domestication events

scientific article published on 22 November 2019

The domestication and evolutionary ecology of apples

scientific article

The impact of genome defense on mobile elements in Microbotryum

scientific article published on 07 November 2009

The minisatellite MSB1, in the fungus Botrytis cinerea, probably mutates by slippage

scientific article

The population biology of fungal invasions

scientific article

The tempo and modes of evolution of reproductive isolation in fungi

scientific article

The worldwide expansion of the Argentine ant

article

Threat to Asian wild apple trees posed by gene flow from domesticated apple trees and their pestified pathogens

scientific article published on 08 October 2020

Two Sibling Species of theBotrytis cinereaComplex,transposaandvacuma, Are Found in Sympatry on Numerous Host Plants

article

Using phylogenies of pheromone receptor genes in the Microbotryum violaceum species complex to investigate possible speciation by hybridization

scientific article

What is sympatric speciation in parasites?

scientific article published on 01 May 2004

When can host shifts produce congruent host and parasite phylogenies? A simulation approach

scientific article

Widespread selective sweeps throughout the genome of model plant pathogenic fungi and identification of effector candidates

scientific article published on 24 December 2016

Within-host competitive exclusion among species of the anther smut pathogen

scientific article

cloncase: Estimation of sex frequency and effective population size by clonemate resampling in partially clonal organisms

scientific article published on 9 February 2016

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