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List of works by Kris Gevaert

A Repressor Protein Complex Regulates Leaf Growth in Arabidopsis.

scientific article

A Saccharomyces cerevisiae model reveals in vivo functional impairment of the Ogden syndrome N-terminal acetyltransferase NAA10 Ser37Pro mutant

scientific article

A Well-Controlled BioID Design for Endogenous Bait Proteins

scientific article published on 10 December 2018

A la carte proteomics with an emphasis on gel-free techniques

scientific article published on August 2007

A novel approach to analyze lysosomal dysfunctions through subcellular proteomics and lipidomics: the case of NPC1 deficiency

scientific article published on 30 January 2017

A novel strategy for the comprehensive analysis of the biomolecular composition of isolated plasma membranes

scientific article published on 25 October 2011

A review of COFRADIC techniques targeting protein N-terminal acetylation

scientific article

ADAM30 Downregulates APP-Linked Defects Through Cathepsin D Activation in Alzheimer's Disease

scientific article published on 02 June 2016

ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development

scientific article

Activation of ADF/cofilin by phosphorylation-regulated Slingshot phosphatase is required for the meiotic spindle assembly in Xenopus laevis oocytes

scientific article published on 24 April 2013

Adaptor protein complex interaction map in Arabidopsis identifies P34 as a common stability regulator

scientific article published in 2023

An aspartyl protease inhibitor of Ostertagia ostertagi: molecular cloning, analysis of stage and tissue specific expression and vaccine trial

scientific article

An organellar nα-acetyltransferase, naa60, acetylates cytosolic N termini of transmembrane proteins and maintains Golgi integrity

scientific journal article

Analyzing trapped protein complexes by Virotrap and SFINX.

scientific article published on 30 March 2017

Applications of diagonal chromatography for proteome-wide characterization of protein modifications and activity-based analyses.

scientific article

Biochemical and cellular analysis of Ogden syndrome reveals downstream Nt-acetylation defects

scientific article

Caspase substrates: easily caught in deep waters?

scientific article published on 29 October 2009

Caspase-14 is required for filaggrin degradation to natural moisturizing factors in the skin

scientific article published on 9 June 2011

Caspase-14 protects against epidermal UVB photodamage and water loss

scientific article

Caught green-handed: methods for in vivo detection and visualization of protease activity

scientific article published on 01 April 2019

Cell_motility: a cross-platform, open source application for the study of cell motion paths

scientific article published on 8 June 2006

Cells lacking β-actin are genetically reprogrammed and maintain conditional migratory capacity

scientific article

Characterization of a secreted Chlamydia protease

scientific article

Chronic Kidney Disease Circulating Calciprotein Particles and Extracellular Vesicles Promote Vascular Calcification: A Role for GRP (Gla-Rich Protein).

scientific article published on 4 January 2018

Combining quantitative proteomics data processing workflows for greater sensitivity

scientific article

Comparative proteome analysis of Chlamydia trachomatis serovar A, D and L2.

scientific article

Comparison of Free-Space and Waveguide-Based SERS Platforms

scientific article published on 01 October 2019

Compound A, a selective glucocorticoid receptor modulator, enhances heat shock protein Hsp70 gene promoter activation

scientific article (publication date: 2013)

Confounding factors of ultrafiltration and protein analysis in extracellular vesicle research

scientific article

Conservation of the extended substrate specificity profiles among homologous granzymes across species

scientific article published on 20 June 2013

Construction and analysis of a human testis/sperm-enriched interaction network: Unraveling the PPP1CC2 interactome

scientific article published on 29 November 2016

Damage on plants activates Ca2+-dependent metacaspases for release of immunomodulatory peptides

scientific article published on 01 March 2019

De novo design of a biologically active amyloid. ⬇️

scientific article

Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events

scientific article published on 21 February 2013

Degradomics reveals that cleavage specificity profiles of caspase-2 and effector caspases are alike

scientific article

Deregulation of focal adhesion formation and cytoskeletal tension due to loss of A-type lamins

scientific article published on 28 October 2016

Development and Validation of a Quantitative Method for Multiple Allergen Detection in Food Using Concatemer-Based Isotope Dilution Mass Spectrometry

scientific article published in 2022

Development and characterization of protein kinase B/AKT isoform-specific nanobodies

scientific article published on 12 October 2020

Developmental Plasticity at High Temperature

scientific article published on 30 July 2019

Diagonal reverse-phase chromatography applications in peptide-centric proteomics: ahead of catalogue-omics?

scientific article

Disentanglement of protease substrate repertoires

scientific article published on April 2008

Disulfide bond formation protects Arabidopsis thaliana glutathione transferase tau 23 from oxidative damage

scientific article published on 11 October 2017

Diversity in protein glycosylation among insect species

scientific article

Do we want our data raw? Including binary mass spectrometry data in public proteomics data repositories

scientific article

Do we want our data raw? Including binary mass spectrometry data in public proteomics data repositories

Drugging the catalytically inactive state of RET kinase in RET-rearranged tumors.

scientific article published on June 2017

Dynamic Changes in ANGUSTIFOLIA3 Complex Composition Reveal a Growth Regulatory Mechanism in the Maize Leaf.

scientific article

Early targets of miR-34a in neuroblastoma

scientific article

Ectopic application of the repressive histone modification H3K9me2 establishes post-zygotic reproductive isolation in Arabidopsis thaliana

scientific article

Expanding the Interactome of TES by Exploiting TES Modules with Different Subcellular Localizations.

scientific article published on 5 April 2017

Experimental design and data-analysis in label-free quantitative LC/MS proteomics: A tutorial with MSqRob

scientific article

Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides

scientific article

Exploring the protein-protein interaction landscape in plants

scientific article published on 3 October 2018

FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination

scientific article published on 2 April 2018

FYVE1/FREE1 Interacts with the PYL4 ABA Receptor and Mediates its Delivery to the Vacuolar Degradation Pathway

scientific article published on 5 August 2016

Four stage liquid chromatographic selection of methionyl peptides for peptide-centric proteome analysis: the proteome of human multipotent adult progenitor cells

scientific article

Functional characterization of the Arabidopsis transcription factor bZIP29 reveals its role in leaf and root development

scientific article

GRIM REAPER peptide binds to receptor kinase PRK5 to trigger cell death in Arabidopsis

scientific article

GSyellow, a Multifaceted Tag for Functional Protein Analysis in Monocot and Dicot Plants

scientific article published on 20 April 2018

GalNAc/Gal-binding Rhizoctonia solani agglutinin has antiproliferative activity in Drosophila melanogaster S2 cells via MAPK and JAK/STAT signaling

scientific article

Global analysis of the mitochondrial N-proteome identifies a processing peptidase critical for protein stability

scientific article

Global phosphoproteome analysis on human HepG2 hepatocytes using reversed-phase diagonal LC

scientific article

Glutaredoxin GRXS17 Associates with the Cytosolic Iron-Sulfur Cluster Assembly Pathway.

scientific article published on 8 August 2016

Gold nanodome SERS platform for label-free detection of protease activity.

scientific article

HIV-1 Vpr N-terminal tagging affects alternative splicing of the viral genome

scientific article published on 10 October 2016

High-resolution mass spectrometry-based selection of peanut peptide biomarkers considering food processing and market type variation

scientific article published on 26 August 2019

Human Proteinpedia enables sharing of human protein data

scientific article

Human and mouse granzyme M display divergent and species-specific substrate specificities

scientific article

HyperISGylation of Old World monkey ISG15 in human cells

scientific article

Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster

scientific article

Identification of Carboxypeptidase Substrates by C-Terminal COFRADIC.

scientific article published in January 2017

Identification of Immune-Responsive Gene 1 (IRG1) as a Target of A20

scientific article published on 11 May 2018

Implementation and application of a versatile clustering tool for tandem mass spectrometry data

scientific article

Importance of extended protease substrate recognition motifs in steering BNIP-2 cleavage by human and mouse granzymes B.

scientific article

Improving the reliability and throughput of mass spectrometry-based proteomics by spectrum quality filtering

scientific article

In vitro and in vivo protein-bound tyrosine nitration characterized by diagonal chromatography

scientific article

Integrator restrains paraspeckles assembly by promoting isoform switching of the lncRNA NEAT1

scientific article published on 03 July 2020

It's Time for Some "Site"-Seeing: Novel Tools to Monitor the Ubiquitin Landscape in Arabidopsis thaliana

scientific article

LNCipedia: a database for annotated human lncRNA transcript sequences and structures

scientific article (publication date: 2013)

LRRK2 controls an EndoA phosphorylation cycle in synaptic endocytosis

scientific article

LRRK2 functions in synaptic vesicle endocytosis through a kinase-dependent mechanism

scientific article

Limited Proteolysis Combined with Stable Isotope Labeling Reveals Conformational Changes in Protein (Pseudo)kinases upon Binding Small Molecules.

scientific article

Linking functions: an additional role for an intrinsically disordered linker domain in the transcriptional coactivator CBP.

scientific article

Listeria comet tails: the actin-based motility machinery at work

scientific article

MSqRob takes the missing hurdle: uniting intensity- and count-based proteomics

scientific article published on 31 March 2020

Mapping proteolytic processing in the secretome of gastric cancer-associated myofibroblasts reveals activation of MMP-1, MMP-2, and MMP-3

scientific article (publication date: 5 July 2013)

MascotDatfile: an open-source library to fully parse and analyse MASCOT MS/MS search results

scientific article published in February 2007

Mass spectrometry-driven proteomics: an introduction

scientific article

Matrix metalloproteinase 13 modulates intestinal epithelial barrier integrity in inflammatory diseases by activating TNF.

scientific article published on 30 May 2013

Morphological and biochemical characterization of a human liver in a uPA-SCID mouse chimera

scientific article

Mutations in LZTR1 drive human disease by dysregulating RAS ubiquitination

scientific article published on 15 November 2018

N-glycosylation Site Analysis Reveals Sex-related Differences in Protein N-glycosylation in the Rice Brown Planthopper (Nilaparvata lugens)

scientific article published on 10 January 2020

N-terminal Acetylation Levels Are Maintained During Acetyl-CoA Deficiency in

scientific article published on 27 August 2018

N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana

scientific article

N-terminal acetylation and other functions of Nα-acetyltransferases

scientific article

N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.

scientific article

N-terminal acetylome analysis reveals the specificity of Naa50 (Nat5) and suggests a kinetic competition between N-terminal acetyltransferases and methionine aminopeptidases

scientific article

NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation

scientific article

Noncoding after All: Biases in Proteomics Data Do Not Explain Observed Absence of lncRNA Translation Products

scientific article

Organellar Omics-A Reviving Strategy to Untangle the Biomolecular Complexity of the Cell

scientific article published on 10 November 2017

PINK1 loss-of-function mutations affect mitochondrial complex I activity via NdufA10 ubiquinone uncoupling

scientific journal article

PRIDE: the proteomics identifications database

scientific article

Parkin interacts with Ambra1 to induce mitophagy

scientific article

Peanut Stunt Virus and Its Satellite RNA Trigger Changes in Phosphorylation in Infected Plants at the Early Stage of the Infection

article

PepShell: visualization of conformational proteomics data.

scientific article

Peptide-level Robust Ridge Regression Improves Estimation, Sensitivity, and Specificity in Data-dependent Quantitative Label-free Shotgun Proteomics

scientific article

Peptizer, a tool for assessing false positive peptide identifications and manually validating selected results

scientific article

Plant proteins under oxidative attack

scientific article

Positional proteomics reveals differences in N-terminal proteoform stability

scientific article published on 18 February 2016

Protease Substrate Profiling by N-Terminal COFRADIC.

scientific article published in January 2017

Protein N-terminal acetyltransferases act as N-terminal propionyltransferases in vitro and in vivo

scientific article

Protein N-terminal acetyltransferases: when the start matters

scientific article

Protein processing and other modifications analyzed by diagonal peptide chromatography

scientific article published on 14 September 2006

Proteogenomics in Aid of Host-Pathogen Interaction Studies: A Bacterial Perspective

scientific article published on 11 October 2017

Proteome Profiling of Wheat Shoots from Different Cultivars

scientific article published on 13 March 2017

Proteome-derived peptide libraries allow detailed analysis of the substrate specificities of N(alpha)-acetyltransferases and point to hNaa10p as the post-translational actin N(alpha)-acetyltransferase

scientific article

Proteome-wide Identification of HtrA2/Omi Substrates

scientific article

Proteome-wide substrate analysis indicates substrate exclusion as a mechanism to generate caspase-7 versus caspase-3 specificity

scientific journal article

Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans

scholarly article

Quantitative Proteome Profiling of C. burnetii under Tetracycline Stress Conditions ⬇️

scientific article published on March 16, 2012

Quantitative proteomics and systems analysis of cultured H9C2 cardiomyoblasts during differentiation over time supports a ‘function follows form’ model of differentiation

scientific article published on 01 June 2018

Redox proteomics of protein-bound methionine oxidation

scientific article

Resolution of protein structure by mass spectrometry.

scientific article

Rover: a tool to visualize and validate quantitative proteomics data from different sources

scientific article

SFINX: Straightforward Filtering Index for Affinity Purification-Mass Spectrometry Data Analysis

scientific article

Seed germination in parasitic plants: what insights can we expect from strigolactone research?

scientific article published on 21 December 2017

Selection of universal peptide biomarkers for the detection of the allergen hazelnut in food trough a comprehensive, high resolution mass spectrometric (HRMS) based approach

scientific article published on 19 October 2019

Selective Glucocorticoid Receptor Properties of GSK866 Analogs with Cysteine Reactive Warheads

scientific article published in November 2017

Selective Modulation of the Human Glucocorticoid Receptor Compromises GR Chromatin Occupancy and Recruitment of p300/CBP and the Mediator Complex

scientific article published in 2024

SnRK2 Protein Kinases and mRNA Decapping Machinery Control Root Development and Response to Salt

scientific article published on 30 September 2019

Stable isotopic labeling in proteomics

scientific article published on December 2008

Strigolactones, karrikins and beyond

scientific article published on 30 May 2017

Structure of granzyme C reveals an unusual mechanism of protease autoinhibition

scientific article

Sulfenome mining in Arabidopsis thaliana

scientific article

T-cell receptor-induced JNK activation requires proteolytic inactivation of CYLD by MALT1.

scientific article

Targeted Proteomics for Studying Pathogenic Bacteria

scientific article published on 25 July 2019

Targeted peptidecentric proteomics reveals caspase-7 as a substrate of the caspase-1 inflammasomes

scientific article published on 30 July 2008

The CEP5 peptide promotes abiotic stress tolerance, as revealed by quantitative proteomics, and attenuates the AUX/IAA equilibrium in Arabidopsis

scientific article published on 13 May 2020

The MAGUK protein MPP7 binds to the polarity protein hDlg1 and facilitates epithelial tight junction formation

scientific article

The Online Protein Processing Resource (TOPPR): a database and analysis platform for protein processing events

scientific article (publication date: 2013)

The Plant PTM Viewer, a central resource for exploring plant protein modifications

scientific article published on 13 May 2019

The RING E3 Ligase KEEP ON GOING Modulates JASMONATE ZIM-DOMAIN12 Stability.

scientific article published on 28 August 2015

The ROS Wheel: Refining ROS Transcriptional Footprints.

scientific article published on 31 May 2016

The TPLATE adaptor complex drives clathrin-mediated endocytosis in plants

scientific article

The calcium-binding protein p54/NEFA is a novel luminal resident of medial Golgi cisternae that traffics independently of mannosidase II

scientific journal article

The chaperone-like protein HYPK acts together with NatA in cotranslational N-terminal acetylation and prevention of Huntingtin aggregation

scientific article

The deubiquitylase USP33 discriminates between RALB functions in autophagy and innate immune response

scientific article

The expression, processing and localization of polymorphic membrane proteins in Chlamydia pneumoniae strain CWL029

scientific article

The human N-alpha-acetyltransferase 40 (hNaa40p/hNatD) is conserved from yeast and N-terminally acetylates histones H2A and H4

scientific article

The human platelet proteome mapped by peptide-centric proteomics: a functional protein profile

scientific article published in August 2005

The iceLogo web server and SOAP service for determining protein consensus sequences

scientific article published on 20 April 2015

The mTOR and PP2A Pathways Regulate PHD2 Phosphorylation to Fine-Tune HIF1α Levels and Colorectal Cancer Cell Survival under Hypoxia.

scientific article published on February 2017

The membrane-localized protein kinase MAP4K4/TOT3 regulates thermomorphogenesis

scientific article published on 14 May 2021

The miR-17-92 microRNA cluster regulates multiple components of the TGF-β pathway in neuroblastoma

scientific article published on December 2010

The neural cell adhesion molecules L1 and CHL1 are cleaved by BACE1 protease in vivo

scientific article

The proteome of the human neuroblastoma cell line SH-SY5Y: an enlarged proteome

scientific article

The transcriptional repressor Glis2 is a novel binding partner for p120 catenin

scientific journal article

The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.

scientific article

Thermo-msf-parser: an open source Java library to parse and visualize Thermo Proteome Discoverer msf files

scientific article

Tumor necrosis factor-induced modulation of glyoxalase I activities through phosphorylation by PKA results in cell death and is accompanied by the formation of a specific methylglyoxal-derived AGE

scientific article

UBP12 and UBP13 negatively regulate the activity of the ubiquitin-dependent peptidases DA1, DAR1 and DAR2

scientific article published on 25 March 2020

Use of Hybrid Data-Dependent and -Independent Acquisition Spectral Libraries Empowers Dual-Proteome Profiling

scientific article published on 19 January 2021

Variable Glutamine-Rich Repeats Modulate Transcription Factor Activity

scientific article

cIAP1/2 are direct E3 ligases conjugating diverse types of ubiquitin chains to receptor interacting proteins kinases 1 to 4 (RIP1-4)

scientific article

m-Calpain activation in vitro does not require autolysis or subunit dissociation

scientific article

qcML: an exchange format for quality control metrics from mass spectrometry experiments

scientific article published on 23 April 2014

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