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List of works by Johan Vallon-Christersson

A naturally occurring allele of BRCA1 coding for a temperature-sensitive mutant protein

scientific article published on September 2002

Aberrant activation of the PI3K/mTOR pathway promotes resistance to sorafenib in AML.

scientific article published on 21 March 2016

Abstract P1-06-01: Putting multigene signatures to the test: Prognostic assessment in population-based contemporary clinical breast cancer

Abstract P1-07-17: The SCAN-B study: 5-year summary of a large-scale population-based prospective breast cancer translational genomics platform covering a wide geography of Sweden (NCT02306096)

scholarly article by LH Saal et al published 14 February 2017 in Cancer Research

Abstract P2-02-09: Breast cancer subtype distribution and circulating tumor DNA in response to neoadjuvant chemotherapy: Experiences from a preoperative cohort within SCAN-B

Abstract P3-02-02: Concordance between immunohistochemical and gene-expression based subtyping of early breast cancer using core needle biopsies and surgical specimens - experices from SCAN-B

article

Abstract P4-09-03: On the development and clinical value of RNA-sequencing-based classifiers for prediction of the five conventional breast cancer biomarkers: A report from the population-based multicenter SCAN-B study

Agreement between molecular subtyping and surrogate subtype classification: a contemporary population-based study of ER-positive/HER2-negative primary breast cancer

scientific article published on 20 August 2019

Alternative splicing and ACMG-AMP-2015-based classification of PALB2 genetic variants: an ENIGMA report

scientific article published on 19 March 2019

An independent poor-prognosis subtype of breast cancer defined by a distinct tumor immune microenvironment

scientific article published on 03 December 2019

An integrated genomics analysis of epigenetic subtypes in human breast tumors links DNA methylation patterns to chromatin states in normal mammary cells.

scientific article published on 29 February 2016

An introduction to BioArray Software Environment

scientific article published on January 2006

Analysis of fusion transcripts indicates widespread deregulation of snoRNAs and their host genes in breast cancer

scientific article published on 17 February 2020

Author Correction: Mutational and putative neoantigen load predict clinical benefit of adoptive T cell therapy in melanoma

scientific article published on 01 April 2020

BASE--2nd generation software for microarray data management and analysis

scientific article (publication date: 12 October 2009)

BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data.

scientific article

CD44 isoforms are heterogeneously expressed in breast cancer and correlate with tumor subtypes and cancer stem cell markers

scientific article

Calibration and assessment of channel-specific biases in microarray data with extended dynamical range

scientific article

Characterisation of amplification patterns and target genes at chromosome 11q13 in CCND1-amplified sporadic and familial breast tumours.

scientific article published on 16 October 2011

Characterization of a novel breast carcinoma xenograft and cell line derived from a BRCA1 germ-line mutation carrier.

scientific article published on March 2003

Clinical Value of RNA Sequencing–Based Classifiers for Prediction of the Five Conventional Breast Cancer Biomarkers: A Report From the Population-Based Multicenter Sweden Cancerome Analysis Network—Breast Initiative

scientific article published on 09 March 2018

Comprehensive molecular comparison of BRCA1 hypermethylated and BRCA1 mutated triple negative breast cancers

scientific article published on 27 July 2020

Cross comparison and prognostic assessment of breast cancer multigene signatures in a large population-based contemporary clinical series

scientific article published on 21 August 2019

Distinct genomic profiles in hereditary breast tumors identified by array-based comparative genomic hybridization

scientific article published on September 2005

Erythropoietin suppresses the activation of pro-apoptotic genes in head and neck squamous cell carcinoma xenografts exposed to surgical trauma.

scientific article

Frequent miRNA-convergent fusion gene events in breast cancer

scientific article published on 5 October 2017

Functional analysis of BRCA1 C-terminal missense mutations identified in breast and ovarian cancer families

scientific article published on February 2001

Gene expression profiles relate to SS18/SSX fusion type in synovial sarcoma

scientific article

Genomic subtypes of breast cancer identified by array-comparative genomic hybridization display distinct molecular and clinical characteristics

scientific article

Genotyping techniques to address diversity in tumors

scientific article published on January 2011

Glucocorticoid-resistant B cell acute lymphoblastic leukemia displays receptor tyrosine kinase activation

scientific article published on 04 April 2019

High expression of ZNF703 independent of amplification indicates worse prognosis in patients with luminal B breast cancer

scientific article published on 22 May 2013

High-resolution genomic and expression analyses of copy number alterations in HER2-amplified breast cancer

scientific article

High-resolution genomic profiles of breast cancer cell lines assessed by tiling BAC array comparative genomic hybridization

scientific article published in June 2007

Human neuroblastoma cells exposed to hypoxia: induction of genes associated with growth, survival, and aggressive behavior

scientific article published on May 2004

Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene.

scientific article

Identification of subtypes in human epidermal growth factor receptor 2--positive breast cancer reveals a gene signature prognostic of outcome

scientific article

Implementation of an Open Source Software solution for Laboratory Information Management and automated RNAseq data analysis in a large-scale Cancer Genomics initiative using BASE with extension package Reggie

scholarly article published 6 February 2016

Minimizing inequality in access to precision medicine in breast cancer by real-time population-based molecular analysis in the SCAN-B initiative.

scientific article published in January 2018

Molecular characteristics of inherited breast tumors.

scientific article published on 12 March 2000

Molecular profiling reveals low- and high-grade forms of primary melanoma

scientific article

Molecular subtypes of breast cancer are associated with characteristic DNA methylation patterns

scientific article

Multidimensional transcriptomics provides detailed information about immune cell distribution and identity in HER2+ breast tumors

Multiple metastases from cutaneous malignant melanoma patients may display heterogeneous genomic and epigenomic patterns

Multiple metastases from cutaneous malignant melanoma patients may display heterogeneous genomic and epigenomic patterns.

scientific article published in October 2010

Multiregion Whole-Exome Sequencing Uncovers the Genetic Evolution and Mutational Heterogeneity of Early-Stage Metastatic Melanoma

scientific article published on 23 May 2016

Mutational and putative neoantigen load predict clinical benefit of adoptive T cell therapy in melanoma

scientific article published on 23 November 2017

Non-coding antisense transcription detected by conventional and single-stranded cDNA microarray

scientific article

Nonsense-mediated mRNA decay in barley mutants allows the cloning of mutated genes by a microarray approach

article

Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios

scientific article

Normalization of array-CGH data: influence of copy number imbalances

scientific article

Performance of gene expression-based single sample predictors for assessment of clinicopathological subgroups and molecular subtypes in cancers: a case comparison study in non-small cell lung cancer

scientific article published on 04 February 2019

Prediction of Lymph Node Metastasis in Breast Cancer by Gene Expression and Clinicopathological Models: Development and Validation within a Population-Based Cohort

scientific article published on 24 July 2019

Prognostic implications of the expression levels of different immunoglobulin heavy chain-encoding RNAs in early breast cancer

scientific article published on 06 July 2020

Recruitment of HIF-1α and HIF-2α to common target genes is differentially regulated in neuroblastoma: HIF-2α promotes an aggressive phenotype

article

Recurrent gross mutations of the PTEN tumor suppressor gene in breast cancers with deficient DSB repair.

scientific article

Refinement of breast cancer molecular classification by miRNA expression profiles

scientific article published on 17 June 2019

Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays

scientific article published on 16 September 2008

Serum selenium, selenoprotein P and glutathione peroxidase 3 as predictors of mortality and recurrence following breast cancer diagnosis: A multicentre cohort study

scientific article published on 21 September 2021

Staf50 is a novel p53 target gene conferring reduced clonogenic growth of leukemic U-937 cells.

scientific article published in May 2004

Targeted sequencing of BRCA1 and BRCA2 across a large unselected breast cancer cohort suggests that one-third of mutations are somatic ⬇️

scientific article published on 18 May 2016

Tasquinimod (ABR-215050), a quinoline-3-carboxamide anti-angiogenic agent, modulates the expression of thrombospondin-1 in human prostate tumors

scientific article

Tertiary lymphoid structures improve immunotherapy and survival in melanoma

scientific article published on 15 January 2020

The BRCA1 syndrome and other inherited breast or breast-ovarian cancers in a Norwegian prospective series

scientific article published in May 2001

The HER2-encoded miR-4728-3p regulates ESR1 through a non-canonical internal seed interaction

scientific article

The Sweden Cancerome Analysis Network - Breast (SCAN-B) Initiative: a large-scale multicenter infrastructure towards implementation of breast cancer genomic analyses in the clinical routine

scientific article

The Wilms' tumor gene 1 (WT1) induces expression of the N-myc downstream regulated gene 2 (NDRG2).

scientific article published on August 2007

The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs

scientific article

The retinoblastoma gene undergoes rearrangements in BRCA1-deficient basal-like breast cancer

scientific article published on 15 June 2012

Tumor genetic heterogeneity analysis of chronic sun-damaged melanoma

scientific article published on 07 December 2019

Whole-genome sequencing of triple-negative breast cancers in a population-based clinical study

scientific article published on 30 September 2019

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