List of works - Alpha Tom Kodamullil

A Systems Biology Approach for Hypothesizing the Effect of Genetic Variants on Neuroimaging Features in Alzheimer’s Disease

scientific article

Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders

scientific article

COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology

scientific article published on 15 April 2020

COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology

scientific article published on 25 September 2020

Comorbidity Analysis between Alzheimer's Disease and Type 2 Diabetes Mellitus (T2DM) Based on Shared Pathways and the Role of T2DM Drugs

scientific article published on 8 September 2017

Computable cause-and-effect models of healthy and Alzheimer's disease states and their mechanistic differential analysis

scientific article published on 4 April 2015

Computational Modelling Approaches on Epigenetic Factors in Neurodegenerative and Autoimmune Diseases and Their Mechanistic Analysis

scientific article

Contribution of syndecans to cellular uptake and fibrillation of α-synuclein and tau

scientific article published on 12 November 2019

Corrigendum to “Machine Learning Based Prediction of COVID-19 Mortality Suggests Repositioning of Anticancer Drug for Treating Severe Cases”[Artificial Intelligence in Life Sciences] 1(2021), 100020

scientific article published in 2022

Data-Driven Modeling of Knowledge Assemblies in Understanding Comorbidity Between Type 2 Diabetes Mellitus and Alzheimer's Disease

scientific article published on 08 September 2020

Elucidating gene expression patterns across multiple biological contexts through a large-scale investigation of transcriptomic datasets

scientific article published on 01 January 2022

Elucidating gene expression patterns across multiple biological contexts through a large-scale investigation of transcriptomic datasets

scientific article published on 15 June 2022

Identifying multimodal signatures underlying the somatic comorbidity of psychosis: the COMMITMENT roadmap

scientific article published on 15 October 2020

Integrative data semantics through a model-enabled data stewardship

scientific article published in 2022

Multimodal Mechanistic Signatures for Neurodegenerative Diseases (NeuroMMSig): a web server for mechanism enrichment

scientific article

Of Mice and Men: Comparative Analysis of Neuro-Inflammatory Mechanisms in Human and Mouse Using Cause-and-Effect Models

scientific article published on 17 July 2017

PDON: Parkinson's disease ontology for representation and modeling of the Parkinson's disease knowledge domain

scientific article

PTSD Biomarker Database: deep dive metadatabase for PTSD biomarkers, visualizations and analysis tools

scientific article published on 01 January 2019

ProtSTonKGs: A Sophisticated Transformer Trained on Protein Sequences, Text, and Knowledge Graphs ⬇️

Quantifying mechanisms in neurodegenerative diseases (NDDs) using candidate mechanism perturbation amplitude (CMPA) algorithm

scientific article published on 11 October 2019

Reasoning over genetic variance information in cause-and-effect models of neurodegenerative diseases

scientific article published on 5 August 2015

STonKGs: A Sophisticated Transformer Trained on Biomedical Text and Knowledge Graphs

preprint published on 18 August 2021

STonKGs: A Sophisticated Transformer Trained on Biomedical Text and Knowledge Graphs

scientific article published on 5 January 2022

The COVID-19 Ontology

scientific article published on 21 December 2020

Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms

scientific article published on 11 June 2021

Towards a mechanism-based taxonomy of Alzheimer’s and Parkinson’s disease ⬇️

conference poster

Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL).

scientific article published on 23 August 2016

Trial watch: Tracing investment in drug development for Alzheimer disease

scientific article published on 23 October 2017

Using Drugs as Molecular Probes: A Computational Chemical Biology Approach in Neurodegenerative Diseases

scientific article (publication date: 2017)

List of works by Alpha Tom Kodamullil

A Systems Biology Approach for Hypothesizing the Effect of Genetic Variants on Neuroimaging Features in Alzheimer’s Disease

Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders

COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology

COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology

Comorbidity Analysis between Alzheimer's Disease and Type 2 Diabetes Mellitus (T2DM) Based on Shared Pathways and the Role of T2DM Drugs

Computable cause-and-effect models of healthy and Alzheimer's disease states and their mechanistic differential analysis

Computational Modelling Approaches on Epigenetic Factors in Neurodegenerative and Autoimmune Diseases and Their Mechanistic Analysis

Contribution of syndecans to cellular uptake and fibrillation of α-synuclein and tau

Corrigendum to “Machine Learning Based Prediction of COVID-19 Mortality Suggests Repositioning of Anticancer Drug for Treating Severe Cases”[Artificial Intelligence in Life Sciences] 1(2021), 100020

Data-Driven Modeling of Knowledge Assemblies in Understanding Comorbidity Between Type 2 Diabetes Mellitus and Alzheimer's Disease

Elucidating gene expression patterns across multiple biological contexts through a large-scale investigation of transcriptomic datasets

Elucidating gene expression patterns across multiple biological contexts through a large-scale investigation of transcriptomic datasets

Identifying multimodal signatures underlying the somatic comorbidity of psychosis: the COMMITMENT roadmap

Integrative data semantics through a model-enabled data stewardship

Multimodal Mechanistic Signatures for Neurodegenerative Diseases (NeuroMMSig): a web server for mechanism enrichment

Of Mice and Men: Comparative Analysis of Neuro-Inflammatory Mechanisms in Human and Mouse Using Cause-and-Effect Models

PDON: Parkinson's disease ontology for representation and modeling of the Parkinson's disease knowledge domain

PTSD Biomarker Database: deep dive metadatabase for PTSD biomarkers, visualizations and analysis tools

ProtSTonKGs: A Sophisticated Transformer Trained on Protein Sequences, Text, and Knowledge Graphs ⬇️

Quantifying mechanisms in neurodegenerative diseases (NDDs) using candidate mechanism perturbation amplitude (CMPA) algorithm

Reasoning over genetic variance information in cause-and-effect models of neurodegenerative diseases

STonKGs: A Sophisticated Transformer Trained on Biomedical Text and Knowledge Graphs

STonKGs: A Sophisticated Transformer Trained on Biomedical Text and Knowledge Graphs

The COVID-19 Ontology

Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms

Towards a mechanism-based taxonomy of Alzheimer’s and Parkinson’s disease ⬇️

Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL).

Trial watch: Tracing investment in drug development for Alzheimer disease

Using Drugs as Molecular Probes: A Computational Chemical Biology Approach in Neurodegenerative Diseases