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List of works by Kamran Shalchian-Tabrizi

A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum

scientific article

AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses

scientific article

Accelerated nrDNA evolution and profound AT bias in the medicinal fungus Cordyceps sinensis

scientific article published on 4 February 2007

Analysis of environmental 18S ribosomal RNA sequences reveals unknown diversity of the cosmopolitan phylum Telonemia

scientific article

BIR Pipeline for Preparation of Phylogenomic Data

scientific article

BLAST output visualization in the new sequencing era.

scientific article

BLASTGrabber: a bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data

scientific article

Benthic protists: the under-charted majority

scientific article

CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation ⬇️

scientific article published on May 20, 2011

Collodictyon--an ancient lineage in the tree of eukaryotes

scientific article

Combined heat shock protein 90 and ribosomal RNA sequence phylogeny supports multiple replacements of dinoflagellate plastids

scientific article published in May 2006

Correction to: Enigmatic Diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution

article

Diversification of unicellular eukaryotes: cryptomonad colonizations of marine and fresh waters inferred from revised 18S rRNA phylogeny

scientific article

Enigmatic Diphyllatea eukaryotes: Culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution

article

Enigmatic Diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution

scientific article published on 18 July 2018

Evolutionary position of breviate amoebae and the primary eukaryote divergence

scientific article

Extensive dinoflagellate phylogenies indicate infrequent marine-freshwater transitions

scientific article

Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA.

scientific article

Galerina Earle: A polyphyletic genus in the consortium of dark-spored agarics

scientific article

Genome sequencing and de novo assembly of the giant unicellular alga Acetabularia acetabulum using droplet MDA

scientific article published on 17 June 2021

Heterotachy processes in rhodophyte-derived secondhand plastid genes: Implications for addressing the origin and evolution of dinoflagellate plastids

scientific article published on 12 May 2006

Infrequent marine-freshwater transitions in the microbial world.

scientific article published on 31 August 2009

Infrequent transitions between saline and fresh waters in one of the most abundant microbial lineages (SAR11).

scientific article published on 6 October 2009

Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates

scientific article

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

scientific article published on 28 June 2015

Marine-freshwater colonizations of haptophytes inferred from phylogeny of environmental 18S rDNA sequences

scientific article

Massive expansion of the calpain gene family in unicellular eukaryotes ⬇️

scientific article published on September 29, 2012

Multigene Phylogeny of Choanozoa and the Origin of Animals ⬇️

scientific article published in 2008

Multilocus sequencing reveals multiple geographically structured lineages of Coniophora arida and C. olivacea (Boletales) in North America

scientific article

Multiple gene genealogies and AFLPs suggest cryptic speciation and long-distance dispersal in the basidiomycete Serpula himantioides (Boletales).

scientific article published on February 2006

Patterns of rare and abundant marine microbial eukaryotes

scientific article

Phenotypically different microalgal morphospecies with identical ribosomal DNA: a case of rapid adaptive evolution?

scientific article published on 5 April 2007

Phylogenomics reshuffles the eukaryotic supergroups

scientific article published in 2007

Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes

scientific article

Radiolaria associated with large diversity of marine alveolates

scientific article published on 31 May 2012

Radiolaria divided into Polycystina and Spasmaria in combined 18S and 28S rDNA phylogeny

scientific article published in 2011

Regulatory RNA at the root of animals: dynamic expression of developmental lincRNAs in the calcisponge Sycon ciliatum

scientific article published in December 2015

Revisiting the phylogenetic position of Synchroma grande

scientific article published in July 2009

Seven gene phylogeny of heterokonts

scientific article

Single Cell Transcriptomics, Mega-Phylogeny, and the Genetic Basis of Morphological Innovations in Rhizaria

scientific article

Sulcozoa revealed as a paraphyletic group in mitochondrial phylogenomics

scientific article published on 22 August 2013

Telonema antarcticum sp. nov., a common marine phagotrophic flagellate

scientific article

Telonemia-specific environmental 18S rDNA PCR reveals unknown diversity and multiple marine-freshwater colonizations

scientific article

The 18S and 28S rDNA identity and phylogeny of the common lotic chrysophyteHydrurus foetidus

scholarly article by Dag Klaveness et al published August 2011 in European Journal of Phycology

The catalytic domain CysPc of the DEK1 calpain is functionally conserved in land plants

scientific article published on 13 June 2013

Unicellular Origin of the Animal MicroRNA Machinery

Verrucophora farcimengen. et sp. nov. (Dictyochophyceae, Heterokonta)-a bloom-forming ichthyotoxic flagellate from the Skagerrak, Norway1

scientific article published in October 2007

X-Cells Are Globally Distributed, Genetically Divergent Fish Parasites Related to Perkinsids and Dinoflagellates

scientific article

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