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List of works by Erich Bornberg-Bauer

A Continuum of Evolving De Novo Genes Drives Protein-Coding Novelty in Drosophila

scientific article published on 07 April 2020

A Roadmap to Domain Based Proteomics

scientific article published on 01 January 2019

A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network

scientific article

A putative transcription factor inducing mobility in Mycoplasma pneumoniae

article

A structural model of latent evolutionary potentials underlying neutral networks in proteins

scientific article published on 21 May 2007

Ant behaviour and brain gene expression of defending hosts depend on the ecological success of the intruding social parasite

scientific article published on 01 April 2019

Application of constraint programming techniques for structure prediction of lattice proteins with extended alphabets.

scientific article published in March 1999

Arrangements in the modular evolution of proteins.

scientific article

Author Correction: Higher-order epistasis shapes the fitness landscape of a xenobiotic-degrading enzyme

scientific article published on 12 June 2020

Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN).

scientific article

Back to the sea twice: identifying candidate plant genes for molecular evolution to marine life

scientific article

Becoming a de novo gene

scientific article published on 01 April 2019

BioMiner--modeling, analyzing, and visualizing biochemical pathways and networks

scientific article published in January 2002

CADRE: the Central Aspergillus Data REpository

scientific article

Chapter 6. Comparative genomic approaches to investigate molecular traits specific to social insects

scientific article

Comparative analyses of caste, sex, and developmental stage-specific transcriptomes in two Temnothorax ants

scientific article published on 30 March 2020

Comparative analysis of expressed sequence tag (EST) libraries in the seagrass Zostera marina subjected to temperature stress.

scientific article

Comparative analysis of lincRNA in insect species

scientific article

Comparative transcriptomics of stickleback immune gene responses upon infection by two helminth parasites, Diplostomum pseudospathaceum and Schistocephalus solidus.

scientific article published on 23 May 2016

Comparing folding codes in simple heteropolymer models of protein evolutionary landscape: robustness of the superfunnel paradigm.

scientific article

Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing

scientific article

Computational approaches to identify leucine zippers

scientific article published on June 1998

Conceptual data modelling for bioinformatics

scientific article

Convergent evolution of gene networks by single-gene duplications in higher eukaryotes

scientific article

Correction: Genomics of Divergence along a Continuum of Parapatric Population Differentiation

scientific article published on 30 July 2015

DOGMA: a web server for proteome and transcriptome quality assessment

scientific article published on 01 July 2019

DOGMA: domain-based transcriptome and proteome quality assessment.

scientific article

De Novo Genes are "Frozen Accidents" which Escaped Rapid Turnover of Pervasively Transcribed ORFs

article

Detection of orphan domains in Drosophila using "hydrophobic cluster analysis".

scientific article published on 28 February 2015

Distribution of gibberellin biosynthetic genes and gibberellin production in the Gibberella fujikuroi species complex

scientific article published in June 2005

DoMosaics: software for domain arrangement visualization and domain-centric analysis of proteins

scientific article

Domain deletions and substitutions in the modular protein evolution

scientific article published in 2006

Domain similarity based orthology detection

scientific article published on 13 May 2015

Dr. Zompo: an online data repository for Zostera marina and Posidonia oceanica ESTs

scientific article

Dynamics and adaptive benefits of modular protein evolution.

scientific article

Dynamics and adaptive benefits of protein domain emergence and arrangements during plant genome evolution

scientific article (publication date: 2012)

Emergence of de novo proteins from 'dark genomic matter' by 'grow slow and moult'.

scientific article published in October 2015

Enzyme sub-functionalization driven by regulation

scientific article

Escape from Adaptive Conflict follows from weak functional trade-offs and mutational robustness

scientific article

Evaluating characteristics of de novo assembly software on 454 transcriptome data: a simulation approach

scientific article

Evidence of interaction network evolution by whole-genome duplications: a case study in MADS-box proteins

scientific article

Evolution AfterandBefore Gene Duplication?

article

Evolution of Circular Permutations in Multidomain Proteins

scientific article published on 23 January 2006

Evolution of Protein Domain Repeats in Metazoa

scientific article

Evolution of novel genes in three-spined stickleback populations

scientific article published on 04 June 2020

Evolutionary Potential of Cis-Regulatory Mutations to Cause Rapid Changes in Transcription Factor Binding

scientific article published on 01 February 2019

Evolutionary divergence and limits of conserved non-coding sequence detection in plant genomes

scientific article

Evolutionary dynamics of simple sequence repeats across long evolutionary time scale in genus Drosophila

Evolutionary dynamics on protein bi-stability landscapes can potentially resolve adaptive conflicts

scientific article

Evolvability and single-genotype fluctuation in phenotypic properties: a simple heteropolymer model

scientific article

Expansions of key protein families in the German cockroach highlight the molecular basis of its remarkable success as a global indoor pest

article

Exploring the fitness landscapes of lattice proteins.

scientific article published in January 1997

Extensive copy-number variation of young genes across stickleback populations

scientific article

Fact or fiction: updates on how protein-coding genes might emerge de novo from previously non-coding DNA.

scientific article

Finding common protein interaction patterns across organisms.

scientific article published in January 2006

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species

scientific article

Gene Coexpression Network Reveals Highly Conserved, Well-Regulated Anti-Ageing Mechanisms in Old Ant Queens

scientific article published on 01 June 2021

Gene content evolution in the arthropods

scientific article published on 23 January 2020

Genome-Wide Genotype-Expression Relationships Reveal Both Copy Number and Single Nucleotide Differentiation Contribute to Differential Gene Expression between Stickleback Ecotypes

scientific article published on 01 August 2019

Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks

scientific article

Genome-wide transcriptomic responses of the seagrasses Zostera marina and Nanozostera noltii under a simulated heatwave confirm functional types

scientific article

Genomic and Morphological Evidence Converge to Resolve the Enigma of Strepsiptera

Genomic and morphological evidence converge to resolve the enigma of Strepsiptera

scientific article

Genomic divergence between nine- and three-spined sticklebacks

scientific article (publication date: 5 November 2013)

Genomics of divergence along a continuum of parapatric population differentiation

scientific article

Hemimetabolous genomes reveal molecular basis of termite eusociality

scientific article published on 05 February 2018

High-Throughput, Lysis-Free Screening for Sulfatase Activity Using Escherichia coli Autodisplay in Microdroplets

scientific article published on 04 December 2019

High-throughput Selection of Human <i>de novo</i>-emerged sORFs with High Folding Potential

scientific article published in 2024

Higher-order epistasis shapes the fitness landscape of a xenobiotic-degrading enzyme

scientific article published on 21 October 2019

Higher-order epistatic networks underlie the evolutionary fitness landscape of a xenobiotic- degrading enzyme: Supplementary information

Host-Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes

scientific article

How Do Genomes Create Novel Phenotypes? Insights from the Loss of the Worker Caste in Ant Social Parasites

scientific article

How are model protein structures distributed in sequence space? ⬇️

scientific article published on November 1, 1997

How do new proteins arise?

scientific article

Hybrid Genome Assembly of a Neotropical Mutualistic Ant

scientific article published on 01 August 2019

Identifying core features of adaptive metabolic mechanisms for chronic heat stress attenuation contributing to systems robustness.

scientific article

Immunity comes first: the effect of parasite genotypes on adaptive immunity and immunization in three-spined sticklebacks.

scientific article published on 20 September 2015

Incipient de novo genes can evolve from frozen accidents that escaped rapid transcript turnover

article

Infection routes matter in population-specific responses of the red flour beetle to the entomopathogen Bacillus thuringiensis

scientific article

Just how versatile are domains?

scientific article

MDAT- Aligning multiple domain arrangements

scientific article published on 28 January 2015

Mechanisms and dynamics of orphan gene emergence in insect genomes

scientific article

Mechanisms of transcription factor evolution in Metazoa

scientific article published on 10 June 2016

Metabolism of halophilic archaea

scientific article

Modeling evolutionary landscapes: mutational stability, topology, and superfunnels in sequence space

scientific article published on September 1999

Molecular and phylogenetic characterization of the sieve element occlusion gene family in Fabaceae and non-Fabaceae plants

scientific article

Molecular traces of alternative social organization in a termite genome.

scientific article

One billion years of bZIP transcription factor evolution: conservation and change in dimerization and DNA-binding site specificity

scientific article

Origins and structural properties of novel and de novo protein domains during insect evolution

scholarly article by Steffen Klasberg published in June 2018

Perspectives on protein evolution from simple exact models.

scientific article published on January 2002

Phylogenetic profiling of protein interaction networks in eukaryotic transcription factors reveals focal proteins being ancestral to hubs

scientific article published on 24 February 2005

Phylogeographic differentiation versus transcriptomic adaptation to warm temperatures in Zostera marina, a globally important seagrass

scientific article

Protein Domains as Evolutionary Units

Protein domain evolution is associated with reproductive diversification and adaptive radiation in the genus Eucalyptus

scientific article published on 11 December 2014

Proteome of Hydra nematocyst

scientific article published on 30 January 2012

Quantification and functional analysis of modular protein evolution in a dense phylogenetic tree

scientific article

RNA folding and combinatory landscapes

scientific article published on 01 March 1993

Random structures and evolution of biopolymers: A computational case study on RNA secondary structures

Rapid motif-based prediction of circular permutations in multi-domain proteins

scientific article published on 23 March 2005

Rapid similarity search of proteins using alignments of domain arrangements

scientific article

Recombinatoric exploration of novel folded structures: a heteropolymer-based model of protein evolutionary landscapes

scientific article

Reconstructed evolution of insulin receptors in insects reveals duplications in early insects and cockroaches

scholarly article by Lukas Pm Kremer et al published July 2018 in Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution

Reduction/oxidation-phosphorylation control of DNA binding in the bZIP dimerization network

scientific article published on 4 May 2006

Remodeling of the juvenile hormone pathway through caste-biased gene expression and positive selection along a gradient of termite eusociality

article

Robustness by intrinsically disordered C-termini and translational readthrough

scientific article published on 01 November 2018

Robustness versus evolvability: a paradigm revisited

scientific article published on 7 May 2010

Signals: tinkering with domains

scientific article

Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

scientific article published on May 2013

Specific gene expression responses to parasite genotypes reveal redundancy of innate immunity in vertebrates.

scientific article

Specificity of the innate immune system and diversity of C-type lectin domain (CTLD) proteins in the nematode Caenorhabditis elegans

scientific article published on 11 February 2008

Structural and Mechanistic Analysis of the Choline Sulfatase from Sinorhizobium melliloti: A Class I Sulfatase Specific for an Alkyl Sulfate Ester

scientific article published on 16 February 2018

Structure formation of biopolymers is complex, their evolution may be simple ⬇️

scientific article published on January 1, 1996

Switching from simple to complex oscillations in calcium signaling

scientific article published on September 2000

The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses.

scientific article

The Crohn's disease susceptibility gene DLG5 as a member of the CARD interaction network

scientific article published on 12 March 2008

The Genomic Basis of Arthropod Diversity

article published in 2018

The Goddard and Saturn Genes Are Essential for Drosophila Male Fertility and May Have Arisen De Novo

scientific article

The Rise and Fall of TRP-N, an Ancient Family of Mechanogated Ion Channels, in Metazoa

scientific article

The dynamics and evolutionary potential of domain loss and emergence

scientific article

The evolution of domain arrangements in proteins and interaction networks

scientific article

The evolution of protein interaction networks

scientific article

The evolution of protein interaction networks in regulatory proteins.

scientific article

The first cockroach genome and its significance for understanding development and the evolution of insect eusociality

article

The genome of Eucalyptus grandis

scientific article

The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.

scientific article published on 27 January 2016

The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle

scientific article

The genomes of two key bumblebee species with primitive eusocial organization ⬇️

scientific article

The interface of protein structure, protein biophysics, and molecular evolution

scientific article

The look-ahead effect of phenotypic mutations

scientific article

The sieve element occlusion gene family in dicotyledonous plants.

scientific article published on January 2011

Transcriptional networking

scientific article

Transcriptome profiling of immune tissues reveals habitat-specific gene expression between lake and river sticklebacks

scientific article published on 7 January 2016

Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species

scientific article

TreeWiz: interactive exploration of huge trees

scientific article published in January 2002

Tribolium castaneum gene expression changes after Paranosema whitei infection

scientific article published on 13 February 2018

WWW access to the SYSTERS protein sequence cluster set

scientific article published on 01 March 1999

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