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List of works by Karsten Suhre

1,5-Anhydroglucitol in saliva is a noninvasive marker of short-term glycemic control.

scientific article

3DCoffee: combining protein sequences and structures within multiple sequence alignments

scientific article published in July 2004

3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment

scientific article published on July 2004

A Genome-Wide Survey of Date Palm Cultivars Supports Two Major Subpopulations in Phoenix dactylifera

scientific article published on 8 May 2015

A comprehensive metabolomic data set of date palm fruit.

scientific article

A first genetic map of date palm (Phoenix dactylifera) reveals long-range genome structure conservation in the palms

scientific article

A genome-wide association study of metabolic traits in human urine

scientific article

A genome-wide metabolic QTL analysis in Europeans implicates two loci shaped by recent positive selection

scientific article

A genome-wide perspective of genetic variation in human metabolism

scientific article

A pilot study comparing the metabolic profiles of elite-level athletes from different sporting disciplines

scientific article published on 5 January 2018

A strategy to incorporate prior knowledge into correlation network cutoff selection

scientific article published on 14 October 2020

A systems biology approach using metabolomic data reveals genes and pathways interacting to modulate divergent growth in cattle

scientific article

A systems view of type 2 diabetes-associated metabolic perturbations in saliva, blood and urine at different timescales of glycaemic control

scientific article published on 7 June 2015

Accelerated lipid catabolism and autophagy are cancer survival mechanisms under inhibited glutaminolysis

Accelerated lipid catabolism and autophagy are cancer survival mechanisms under inhibited glutaminolysis

Advanced glycation end products among patients maintained on antipsychotics

scientific article published on 10 May 2017

Alcohol-induced metabolomic differences in humans

scientific article published on 02 July 2013

Alterations in Lipid and Inositol Metabolisms in Two Dopaminergic Disorders

scientific article published on 25 January 2016

An atlas of genetic influences on human blood metabolites

scientific article

Annotation of bacterial genomes using improved phylogenomic profiles

scientific article published on 01 January 2003

Association of DNA methylation with age, gender, and smoking in an Arab population

scientific article

Associations between thyroid hormones and serum metabolite profiles in an euthyroid population

scientific article

Associations of circulating plasma microRNAs with age, body mass index and sex in a population-based study.

scientific article published on 14 October 2015

Author Correction: Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease

scientific article published in Nature Communications

Author Correction: Genus-wide sequencing support a two-locus model for sex-determination in Phoenix

scientific article published in Nature Communications

Author Correction: Metabolic GWAS of elite athletes reveals novel genetically-influenced metabolites associated with athletic performance

scientific article published on 23 June 2020

Automated workflow-based exploitation of pathway databases provides new insights into genetic associations of metabolite profiles

scientific article (publication date: 9 December 2013)

Bayesian decomposition analysis of bacterial phylogenomic profiles

scientific article

Bayesian independent component analysis recovers pathway signatures from blood metabolomics data

scientific article

Biochemical insights from population studies with genetics and metabolomics

scientific article published on 30 September 2015

Bioinformatics analysis of targeted metabolomics--uncovering old and new tales of diabetic mice under medication

scientific article published on 27 March 2008

Biomarkers for type 2 diabetes and impaired fasting glucose using a nontargeted metabolomics approach

scientific article (publication date: December 2013)

Bipolar disorders in the Arab world: a critical review

scientific article published on 05 February 2015

Body fat free mass is associated with the serum metabolite profile in a population-based study

scientific article

CaspR: a web server for automated molecular replacement using homology modelling

scientific article published on July 2004

Changing metabolic signatures of amino acids and lipids during the prediabetic period in a pig model with impaired incretin function and reduced β-cell mass

scientific article

Characteristics of mutants designed to incorporate a new ion pair into the structure of a cold adapted subtilisin-like serine proteinase

scientific article published on 6 December 2008

Characterization of Bulk Phosphatidylcholine Compositions in Human Plasma Using Side-Chain Resolving Lipidomics

scientific article published on 08 June 2019

Characterization of missing values in untargeted MS-based metabolomics data and evaluation of missing data handling strategies

scholarly article published 11 February 2018

Characterization of the metabolic profile associated with serum 25-hydroxyvitamin D: a cross-sectional analysis in population-based data

scientific article

Childhood obesity is associated with changes in the serum metabolite profile

scientific article published on 4 October 2012

Cohort profile: Greifswald approach to individualized medicine (GANI_MED)

scientific article

Comparison of metabolic profiles of acutely ill and short-term weight recovered patients with anorexia nervosa reveals alterations of 33 out of 163 metabolites

scientific article published on 12 September 2012

Complementarity of SOMAscan to LC-MS/MS and RNA-seq for quantitative profiling of human embryonic and mesenchymal stem cells

scientific article published on 6 September 2016

Comprehensive transcriptomic and proteomic characterization of human mesenchymal stem cells reveals source specific cellular markers

scientific article

Computing multiple sequence/structure alignments with the T-coffee package

scientific article published in February 2004

Conformational flexibility of Mycobacterium tuberculosis thioredoxin reductase: crystal structure and normal-mode analysis

scientific journal article

Connecting genetic risk to disease end points through the human blood plasma proteome

scientific article published on 27 February 2017

Connecting genetic risk to disease endpoints through the human blood plasma proteome

Consequences Of Natural Perturbations In The Human Plasma Proteome

article

Copy number variations in the genome of the Qatari population

scientific article published on 22 October 2015

DI-ICR-FT-MS-based high-throughput deep metabotyping: a case study of the Caenorhabditis elegans-Pseudomonas aeruginosa infection model

scientific article published on 27 November 2014

Deep molecular phenotypes link complex disorders and physiological insult to CpG methylation.

scientific article published on 8 January 2018

Defining the genetic control of human blood plasma N-glycome using genome-wide association study

Determination of strongly overlapping signaling activity from microarray data.

scientific article

Development of a reduced chemical scheme for use in mesoscale meteorological models

article

Diagnostic and Prognostic Metabolites Identified for Joint Symptoms in the KORA Population

scientific article

Differences and commonalities in the genetic architecture of protein quantitative trait loci in European and Arab populations

scientific article published in 2022

Differences between human plasma and serum metabolite profiles

scientific article

Discovery of protein-coding palindromic repeats in Wolbachia

scientific article published on June 2005

Discovery of sexual dimorphisms in metabolic and genetic biomarkers

scientific article

Effects of metformin on metabolite profiles and LDL cholesterol in patients with type 2 diabetes

scientific article published on 5 August 2015

Effects of smoking and smoking cessation on human serum metabolite profile: results from the KORA cohort study

scientific article

Elevated HbA1c levels in individuals not diagnosed with type 2 diabetes in Qatar: a pilot study

scientific article

Epigenetic associations of type 2 diabetes and BMI in an Arab population

scientific article published on 28 January 2016

Epigenetic scores for the circulating proteome as tools for disease prediction

scientific article published in 2022

Epigenetics meets metabolomics: an epigenome-wide association study with blood serum metabolic traits

scientific article published on 06 September 2013

Epigenetics meets proteomics in an epigenome-wide association study with circulating blood plasma protein traits

scientific article published on 03 January 2020

Erratum to: A systems view of type 2 diabetes-associated metabolic perturbations in saliva, blood and urine at different timescales of glycaemic control

scientific article published on September 2015

Erratum: Connecting genetic risk to disease end points through the human blood plasma proteome

scientific article published on 11 April 2017

Estimation of prokaryote genomic DNA G+C content by sequencing universally conserved genes

scientific article

Ethnic and gender differences in advanced glycation end products measured by skin auto-fluorescence

scientific article published on April 2013

Evaluation of SNP calling using single and multiple-sample calling algorithms by validation against array base genotyping and Mendelian inheritance

scientific article

Evidence for Stress-like Alterations in the HPA-Axis in Women Taking Oral Contraceptives

scientific article published on 26 October 2017

Fine-Mapping of the Human Blood Plasma N-Glycome onto Its Proteome

scientific article published on 26 June 2019

From Discovery to Translation: Characterization of C-Mannosyltryptophan and Pseudouridine as Markers of Kidney Function.

scientific article published on 12 December 2017

FusionDB: a database for in-depth analysis of prokaryotic gene fusion events

scientific article published on January 2004

GFscore: a general nonlinear consensus scoring function for high-throughput docking

scientific article published in July 2006

Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data

scientific article

Gender-specific pathway differences in the human serum metabolome

scientific article

Gene and Genome Duplication in Acanthamoeba polyphaga Mimivirus

article published in 2005

Gene and genome duplication in Acanthamoeba polyphaga Mimivirus

scientific article

Genetic Influences on Metabolite Levels: A Comparison across Metabolomic Platforms

scientific article

Genetic associations with lipoprotein subfractions provide information on their biological nature

scientific article

Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans

scientific article published on 20 January 2020

Genetic variants including markers from the exome chip and metabolite traits of type 2 diabetes

scientific article

Genetic variation in metabolic phenotypes: study designs and applications ⬇️

scientific article published on 03 October 2012

Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum

scientific article

Genetics meets proteomics: perspectives for large population-based studies

scientific article published on 28 August 2020

Genetics of human metabolism: an update

scientific article

Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality

scientific article published on 9 September 2015

Genome-wide Association Study Of Plasma Proteins Identifies Putatively Causal Genes, Proteins, And Pathways For Cardiovascular Disease

article

Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels

scientific article

Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior

scientific article published on 3 October 2016

Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease

scientific article published in Nature Communications

Genomic atlas of the human plasma proteome

scientific article published in Nature

Genomic correlates of hyperthermostability, an update

scientific article published on 24 February 2003

Genus-wide sequencing supports a two-locus model for sex-determination in Phoenix

scientific article published in Nature Communications

Genus-wide sequencing supports a two-locus model for sex-determination inPhoenix

Guest Editorial: Special issue on metabolomics

scientific article published on 20 October 2015

High TCR diversity ensures optimal function andhomeostasis of Foxp3+regulatory Tcells

scientific article published on 18 October 2011

Human metabolic individuality in biomedical and pharmaceutical research

scientific article (publication date: 31 August 2011)

Human serum metabolic profiles are age dependent

scientific article

Identification and MS-assisted interpretation of genetically influenced NMR signals in human plasma

scientific article published on 15 February 2013

Identification of a potential biomarker for FABP4 inhibition: the power of lipidomics in preclinical drug testing

scientific article published on 4 May 2011

Improvement of myocardial infarction risk prediction via inflammation-associated metabolite biomarkers

scientific article published on 2 March 2017

Increased amino acids levels and the risk of developing of hypertriglyceridemia in a 7-year follow-up

scientific article published on 09 January 2014

Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations

scientific article published on 4 January 2016

Inference of Gene Function Based on Gene Fusion Events: The Rosetta-Stone Method

article

Inference of gene function based on gene fusion events: the rosetta-stone method.

scientific article

Integrative genetic and metabolite profiling analysis suggests altered phosphatidylcholine metabolism in asthma

scientific article

Internal and external mixing in atmospheric aerosols by coagulation: Impact on the optical and hygroscopic properties of the sulphate-soot system

Interrogating causal pathways linking genetic variants, small molecule metabolites, and circulating lipids

scientific article

Isolation, characterization, and bioinformatic analysis of calmodulin-binding protein cmbB reveals a novel tandem IP22 repeat common to many Dictyostelium and Mimivirus proteins

scientific article published on 9 June 2006

Large Scale Metabolic Profiling identifies Novel Steroids linked to Rheumatoid Arthritis

scientific article published on 22 August 2017

Ldlr and ApoE mice better mimic the human metabolite signature of increased carotid intima media thickness compared to other animal models of cardiovascular disease

Leveraging cross-species transcription factor binding site patterns: from diabetes risk loci to disease mechanisms

scientific article published on January 2014

Long term conservation of human metabolic phenotypes and link to heritability

scientific article

MIPS: curated databases and comprehensive secondary data resources in 2010

scientific article

Mapping the genetic architecture of gene regulation in whole blood

scientific article

MassTRIX reloaded: combined analysis and visualization of transcriptome and metabolome data

scientific article

MassTRIX: mass translator into pathways

scientific article published on 28 April 2008

Measurement of 1,5-anhydroglucitol in blood and saliva: from non-targeted metabolomics to biochemical assay

scientific article published on 18 May 2016

Mesenchymal cell interaction with ovarian cancer cells induces a background dependent pro-metastatic transcriptomic profile

scientific article

Mesenchymal cell interaction with ovarian cancer cells triggers pro-metastatic properties

scientific article

MetaRNA-Seq: An Interactive Tool to Browse and Annotate Metadata from RNA-Seq Studies

scientific article published on 25 August 2015

Metabolic Fingerprints of Circulating IGF-1 and the IGF-1/IGFBP-3 Ratio: A Multifluid Metabolomics Study

scientific article

Metabolic GWAS of elite athletes reveals novel genetically-influenced metabolites associated with athletic performance

scientific article published on 27 December 2019

Metabolic and proteomic signatures of hypoglycaemia in type 2 diabetes

scientific article published on 27 December 2018

Metabolic footprint of diabetes: a multiplatform metabolomics study in an epidemiological setting

scientific article (publication date: 11 November 2010)

Metabolic network failures in Alzheimer's disease: A biochemical road map.

scientific article published on 21 March 2017

Metabolic profiling in diabetes

scientific article published on June 2014

Metabolic profiling reveals distinct variations linked to nicotine consumption in humans--first results from the KORA study

scientific article

Metabolic signatures differentiate ovarian from colon cancer cell lines

scientific article published on 14 July 2015

Metabolic switch during adipogenesis: From branched chain amino acid catabolism to lipid synthesis.

scientific article published on 23 September 2015

Metabolite profiling reveals new insights into the regulation of serum urate in humans

scientific article published on 20 July 2013

Metabolite ratios as potential biomarkers for type 2 diabetes: a DIRECT study.

scientific article published on 21 September 2017

Metabolites associate with kidney function decline and incident chronic kidney disease in the general population

scientific article

Metabolomic identification of a novel pathway of blood pressure regulation involving hexadecanedioate

scientific article published in June 2015

Metabolomic markers reveal novel pathways of ageing and early development in human populations

scientific article published on 08 July 2013

Metabolomic profiles in individuals with negative affectivity and social inhibition: a population-based study of Type D personality

scientific article published on 10 December 2012

Metabolomic profiles indicate distinct physiological pathways affected by two loci with major divergent effect on Bos taurus growth and lipid deposition

scientific article published on 20 July 2010

Metabolomic profiling identifies novel associations with Electrolyte and Acid-Base Homeostatic patterns

scientific article published on 21 October 2019

Metabolomics Identifies Novel Blood Biomarkers of Pulmonary Function and COPD in the General Population.

scientific article published in April 2019

Metabolomics approach reveals effects of antihypertensives and lipid-lowering drugs on the human metabolism

scientific article

Metabolomics enables precision medicine: "A White Paper, Community Perspective"

scientific article

Metabolomics of Ramadan fasting: an opportunity for the controlled study of physiological responses to food intake

scientific article

Metabolomics of dates (Phoenix dactylifera) reveals a highly dynamic ripening process accounting for major variation in fruit composition

scientific article published on 16 December 2015

Metabolomics platforms for genome wide association studies—linking the genome to the metabolome ⬇️

scientific article published on October 25, 2012

Metabolomics profiling reveals novel markers for leukocyte telomere length.

scientific article published on 20 January 2016

Metformin Effect on Nontargeted Metabolite Profiles in Patients With Type 2 Diabetes and in Multiple Murine Tissues

scientific article published on 12 September 2016

Metformin supports the antidiabetic effect of a sodium glucose cotransporter 2 inhibitor by suppressing endogenous glucose production in diabetic mice

scientific article published on 28 July 2014

Mimivirus TyrRS: preliminary structural and functional characterization of the first amino-acyl tRNA synthetase found in a virus

scientific article published on 20 January 2005

Mimivirus and the emerging concept of "giant" virus

scientific article published on 15 February 2006

Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes

scientific article

Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information

scientific article

Mixing of boundary layer and upper tropospheric ozone during a deep convective event over Western Europe

MoDentify: a tool for phenotype-driven module identification in multilevel metabolomics networks

MoDentify: phenotype-driven module identification in metabolomics networks at different resolutions

scientific article published on 19 July 2018

Mouse phenotyping

scientific article

Multi-omic signature of body weight change: results from a population-based cohort study

scientific article

Mutation in noncoding RNA RNU12 causes early onset cerebellar ataxia

scientific article published on 18 November 2016

NORMA: a tool for flexible fitting of high-resolution protein structures into low-resolution electron-microscopy-derived density maps

scientific article published on 19 August 2006

Nesting of colon and ovarian cancer cells in the endothelial niche is associated with alterations in glycan and lipid metabolism

scientific article published on 4 January 2017

Network-based approach for analyzing intra- and interfluid metabolite associations in human blood, urine, and saliva

scientific article published on 9 December 2014

Network-based metabolite ratios for an improved functional characterization of genome-wide association study results

Non-truncating LIFR mutation: causal for prominent congenital pain insensitivity phenotype with progressive vertebral destruction?

scientific article published on 19 August 2015

Novel biomarkers for pre-diabetes identified by metabolomics

scientific article

Novel genetic associations with serum level metabolites identified by phenotype set enrichment analyses

scientific article

On the hypothesis-free testing of metabolite ratios in genome-wide and metabolome-wide association studies

scientific article

On the potential of models for location and scale for genome-wide DNA methylation data

scientific article

On the potential of normal-mode analysis for solving difficult molecular-replacement problems

scientific article published on 23 March 2004

Ozone-rich transients in the upper equatorial Atlantic troposphere

scientific article published in Nature

PSEA: Phenotype Set Enrichment Analysis--a new method for analysis of multiple phenotypes

scientific article

Phenotype-driven identification of modules in a hierarchical map of multifluid metabolic correlations

scientific article published on 21 September 2017

Phydbac "Gene Function Predictor": a gene annotation tool based on genomic context analysis

scientific article

Phydbac (phylogenomic display of bacterial genes): An interactive resource for the annotation of bacterial genomes

scientific article

Phydbac2: improved inference of gene function using interactive phylogenomic profiling and chromosomal location analysis

scientific article published on July 2004

PopPAnTe: population and pedigree association testing for quantitative data

scientific article

PopPAnTe: population and pedigree association testing for quantitative data

ProGeM: A framework for the prioritisation of candidate causal genes at molecular quantitative trait loci

article

Procedure for tissue sample preparation and metabolite extraction for high-throughput targeted metabolomics

article published in 2011

Putative gene promoter sequences in the chlorella viruses

scientific article published on 02 September 2008

Questionnaire-based self-reported nutrition habits associate with serum metabolism as revealed by quantitative targeted metabolomics

scientific article published on 30 November 2010

Reductive genome evolution from the mother of Rickettsia

scientific article published in January 2007

Response to Comment on Adam et al. Metformin Effect on Nontargeted Metabolite Profiles in Patients With Type 2 Diabetes and in Multiple Murine Tissues. Diabetes 2016;65:3776–3785

scientific article published on 01 May 2017

Response to Comment on Xu et al. Effects of Metformin on Metabolite Profiles and LDL Cholesterol in Patients With Type 2 Diabetes. Diabetes Care 2015;38:1858–1867

scientific article published on 01 December 2015

Role of medium- and short-chain L-3-hydroxyacyl-CoA dehydrogenase in the regulation of body weight and thermogenesis.

scientific article published on 11 October 2011

SNiPA: an interactive, genetic variant-centered annotation browser

scientific article published on 26 November 2014

Serum metabolite concentrations and decreased GFR in the general population

scientific article published on 30 March 2012

Set1 is required for meiotic S-phase onset, double-strand break formation and middle gene expression

scientific article

Sex-specific metabolic profiles of androgens and its main binding protein SHBG in a middle aged population without diabetes

scientific article

Single Nucleotide Variant Counts Computed from RNA Sequencing and Cellular Traffic into Human Kidney Allografts

scientific article published on 16 April 2018

Specific Metabolic Markers Are Associated with Future Waist-Gaining Phenotype in Women

scientific article

Structural genomics of highly conserved microbial genes of unknown function in search of new antibacterial targets

scientific article

Systems biology analysis merging phenotype, metabolomic and genomic data identifies Non-SMC Condensin I Complex, Subunit G (NCAPG) and cellular maintenance processes as major contributors to genetic variability in bovine feed efficiency.

scientific article

Targeted metabolomics profiles are strongly correlated with nutritional patterns in women

scientific article published on 6 October 2012

The Human Blood Metabolome-Transcriptome Interface

scientific article published on 18 June 2015

The Pharmacogenetic Footprint of ACE Inhibition: A Population-Based Metabolomics Study

scientific article

The Proteomic Signature of Recombinant Growth Hormone in Recreational Athletes

scientific article published on 02 November 2021

The association between various smoking behaviors, cotinine biomarkers and skin autofluorescence, a marker for advanced glycation end product accumulation.

scientific article

The dynamic range of the human metabolome revealed by challenges

scientific article

Tropheryma Whipplei Genome at the Beginning of the Post-Genomic Era

Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome

scientific article

Type 2 diabetes is associated with postprandial amino acid measures

scientific article published on 10 August 2015

Urine Metabolite Profiles Predictive of Human Kidney Allograft Status

scientific article published on 5 June 2015

Variation in the human lipidome associated with coffee consumption as revealed by quantitative targeted metabolomics

scientific article published in November 2009

Variational autoencoders learn transferrable representations of metabolomics data

scientific article published in 2022

Where cancer genomics should go next: a clinician's perspective

scientific article published on 15 May 2014

Whole genome sequencing in the Middle Eastern Qatari population identifies genetic associations with 45 clinically relevant traits

scientific article published on 23 February 2021

Whole-exome sequencing identifies common and rare variant metabolic QTLs in a Middle Eastern population

scientific article

metaP-server: a web-based metabolomics data analysis tool

scientific article

pulver: an R package for parallel ultra-rapid p-value computation for linear regression interaction terms

scientific article published on 29 September 2017

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