List of works by Hans-Werner Mewes

3 The Bioinformatics of the Yeast Genome

article published in 1998

A Rapid Vapor-Phase Acid (Hydrochloric Acid and Trifluoroacetic Acid) Hydrolysis of Peptide and Protein

scientific article published on 01 December 1987

A genome-wide perspective of genetic variation in human metabolism

scientific article

A novel putative miRNA target enhancer signal

scientific article

A web portal for classification of expression data using maximal margin linear programming.

scientific article

An environmental perspective on large-scale genome clustering based on metabolic capabilities

scientific article published in August 2008

Analysis of 1.9 Mb of contiguous sequence from chromosome 4 ofArabidopsis thaliana

scientific article published in Nature

Approaching clinical proteomics: current state and future fields of application in cellular proteomics

scientific article published on October 2009

Approaching clinical proteomics: current state and future fields of application in fluid proteomics

scientific article

BIOREL: The benchmark resource to estimate the relevance of the gene networks

scientific article published on 18 January 2006

Beyond the 'best' match: machine learning annotation of protein sequences by integration of different sources of information.

scientific article

Bioinformatics analysis of targeted metabolomics--uncovering old and new tales of diabetic mice under medication

scientific article published on 27 March 2008

CORUM: the comprehensive resource of mammalian protein complexes

scientific article published on 26 October 2007

Can we estimate the accuracy of ADME-Tox predictions?

scientific article

Combining diverse evidence for gene recognition in completely sequenced bacterial genomes.

scientific article

Complete DNA sequence of yeast chromosome XI.

scientific article published in June 1994

Complex functionality of gene groups identified from high-throughput data.

scientific article

Complex phylogenetic profiling reveals fundamental genotype-phenotype associations.

scientific article

Conservation of protein-protein interactions - lessons from ascomycota.

scientific article published on February 2004

DNA damage-induced expression of p53 suppresses mitotic checkpoint kinase hMps1: the lack of this suppression in p53MUT cells contributes to apoptosis

scientific article

Deciphering the evolution and metabolism of an anammox bacterium from a community genome

scientific article

Development of a Fusarium graminearum Affymetrix GeneChip for profiling fungal gene expression in vitro and in planta

scientific article published on 13 March 2006

EXPANDS: expanding ploidy and allele frequency on nested subpopulations

scientific article published on 30 October 2013

European Science

scientific article published in Science

Exome sequencing identifies ACAD9 mutations as a cause of complex I deficiency

scientific article

Exon discovery by genomic sequence alignment

scientific article published in June 2002

Exploiting scale-free information from expression data for cancer classification

scientific article

FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum

scientific article

FunCat functional inference with belief propagation and feature integration

scientific article published on 03 July 2008

Functional and structural genomics using PEDANT.

scientific article published in January 2001

Functional characterization of two clusters of Brachypodium distachyon UDP-glycosyltransferases encoding putative deoxynivalenol detoxification genes

scientific article published in July 2013

Functional modules by relating protein interaction networks and gene expression.

scientific article

Gene selection from microarray data for cancer classification--a machine learning approach.

scientific article

Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum

scientific article

Genomic organization and molecular characterization of a gene encoding HsPXF, a human peroxisomal farnesylated protein

scientific article

How can we deliver the large plant genomes? Strategies and perspectives

scientific article

Human metabolic individuality in biomedical and pharmaceutical research

scientific article (publication date: 31 August 2011)

Identification and Characterization of Carboxylesterases from Brachypodium distachyon Deacetylating Trichothecene Mycotoxins

scientific article published on 25 December 2015

Identification of plant-regulated genes in Ustilago maydis by enhancer-trapping mutagenesis

scientific article published on 02 October 2003

Implementing systems medicine within healthcare

scientific article

Informatics and Medicine

Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis

scientific article

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

scientific article

KEGG spider: interpretation of genomics data in the context of the global gene metabolic network

scientific article

KNIME4NGS: a comprehensive toolbox for Next Generation Sequencing analysis.

scientific article published on 9 January 2017

Large scale application of neural network based semantic role labeling for automated relation extraction from biomedical texts

scientific article

Large-scale modeling of condition-specific gene regulatory networks by information integration and inference

scientific article

MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome.

scientific article

MIPS: a database for protein sequences and complete genomes

scientific article published in January 1998

MIPS: analysis and annotation of genome information in 2007

scientific article (publication date: 2008)

MIPS: curated databases and comprehensive secondary data resources in 2010

scientific article

MITOP: database for mitochondria-related proteins, genes and diseases.

scientific article published on January 1999

Metabolic footprint of diabetes: a multiplatform metabolomics study in an epidemiological setting

scientific article (publication date: 11 November 2010)

Molecular evolution of eukaryotic genomes: hemiascomycetous yeast spliceosomal introns

scientific article

Network-based SNP meta-analysis identifies joint and disjoint genetic features across common human diseases

scientific article published on 18 September 2012

OREST: the online resource for EST analysis.

scientific article

Online genomics facilities in the new millennium

scientific article

Optimization models for cancer classification: extracting gene interaction information from microarray expression data.

scientific article

Overview of the yeast genome.

scientific article

PEDANT covers all complete RefSeq genomes

scientific article published on 21 October 2008

PEDANT genome database: 10 years online

scientific article published on 5 December 2006

PEDANTic genome analysis

article by Dmitrij Frishman & Hans-Werner Mewes published October 1997 in Trends in Genetics

PLIPS, an automatically collected database of protein lists reported by proteomics studies.

scientific article published on March 2009

PRIME: a graphical interface for integrating genomic/proteomic databases.

scientific article published on January 2005

Perspectives of a systems biology of the brain: the big data conundrum understanding psychiatric diseases.

scientific article

Perspectives of a systems biology of the synapse: how to transform an indefinite data space into a model?

scientific article

PhenoDis: a comprehensive database for phenotypic characterization of rare cardiac diseases

scientific article published on 25 January 2018

Prediction and classification of protein functions

scientific article published on 01 January 2006

ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data

scientific article

Protein sequence databases: database management, data structures and data access.

scientific article published on October 1989

Protein structural classes in five complete genomes

scientific article published on 01 August 1997

Rare variants in LRRK1 and Parkinson's disease

scientific article

Resources and tools for investigating biomolecular networks in mammals

scientific article published on January 2006

SIMAP--a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters

scientific article

SIMAP--structuring the network of protein similarities

scientific article

SIMAP--the database of all-against-all protein sequence similarities and annotations with new interfaces and increased coverage

scientific article

SIMAP--the similarity matrix of proteins.

scientific article published in September 2005

SIMAP: the similarity matrix of proteins

scientific article

SNAPper: gene order predicts gene function.

scientific article published in July 2002

Separation of sequences from host-pathogen interface using triplet nucleotide frequencies.

scientific article published on 10 January 2007

Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana

scientific article

Sequence and analysis of the Arabidopsis genome.

scientific article

Sequence-based prediction of type III secreted proteins

scientific article

SmartPhase: Accurate and fast phasing of heterozygous variant pairs for genetic diagnosis of rare diseases

scientific article published on 07 February 2020

Spatiotemporal expression control correlates with intragenic scaffold matrix attachment regions (S/MARs) in Arabidopsis thaliana

scientific article

Sputnik: a database platform for comparative plant genomics

scientific article

Stroma-Derived Connective Tissue Growth Factor Maintains Cell Cycle Progression and Repopulation Activity of Hematopoietic Stem Cells In Vitro

scientific article published on 28 October 2015

Structure and organization of the European Yeast Genome Sequencing Network

scientific article published on 01 July 1995

Super paramagnetic clustering of protein sequences

scientific article

Support vector machines for separation of mixed plant-pathogen EST collections based on codon usage.

scientific article

Systems biology of oscillatory processes in sleep and mental disorders.

scientific article published on 18 April 2013

TICL - a web tool for network-based interpretation of compound lists inferred by high-throughput metabolomics

scientific article published on 01 April 2009

The 2-(dimethylaminostyryl)-1-methylpyridinium cation as indicator of the mitochondrial membrane potential

scientific article published on 01 August 1981

The DICS repository: module-assisted analysis of disease-related gene lists

article

The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization

scientific article

The Fusarium graminearum genome reveals more secondary metabolite gene clusters and hints of horizontal gene transfer

scientific article

The HIB database of annotated UniGene clusters

article

The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources.

scientific article published in January 2004

The MIPS mammalian protein-protein interaction database

scientific article

The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context

scientific article

The PEDANT genome database

scientific article

The PEDANT genome database in 2005

scientific article

The PIR-International Protein Sequence Database

scientific article published on 01 January 1999

The PIR-International Protein Sequence Database

scientific article published on 01 January 1998

The PIR-International Protein Sequence Database

scientific article published on 01 May 1992

The PIR-International Protein Sequence Database.

scientific article

The PIR-International databases.

scientific article

The bioinformatics of the yeast genome - a historical perspective

scientific article published on 01 April 2019

The minimum information required for reporting a molecular interaction experiment (MIMIx).

scientific article published on August 2007

The sufficient minimal set of miRNA seed types

scientific article

Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs

scientific article

Uncovering metabolic pathways relevant to phenotypic traits of microbial genomes

scientific article published on 10 March 2009

Variations of the C2H2 zinc finger motif in the yeast genome and classification of yeast zinc finger proteins.

scientific article published on June 1997

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