List of works - Klaus-Peter Koepfli

A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships ⬇️

scientific article (publication date: August 2003)

Annotated features of domestic cat - Felis catus genome

scientific article

Aquatic Adaptation and Depleted Diversity: A Deep Dive into the Genomes of the Sea Otter and Giant Otter

scientific article published on 01 December 2019

Author Correction: Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours

scientific article published on 01 September 2018

Blue Turns to Gray: Paleogenomic Insights into the Evolutionary History and Extinction of the Blue Antelope (Hippotragus leucophaeus)

scientific article published in 2022

Blue turns to grey - Palaeogenomic insights into the evolutionary history and extinction of the blue antelope ( Hippotragus leucophaeus )

Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates

scientific article published on 18 April 2020

Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates

scientific article published on 21 August 2020

Chromosome-length genome assembly and karyotype of the endangered black-footed ferret (<i>Mustela nigripes</i>)

scientific article published on 30 May 2023

Chromosomer: a reference-based genome arrangement tool for producing draft chromosome sequences

scientific article

Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs ⬇️

Comparison of genomic diversity and structure of sable antelope (Hippotragus niger) in zoos, conservation centers, and private ranches in North America

scientific article published on 27 April 2020

Darwinian genomics and diversity in the tree of life

scientific article published on 18 January 2022

De novo sequencing, assembly and analysis of eight different transcriptomes from the Malayan pangolin

scientific article

Draft de novo Genome Assembly of the Elusive Jaguarundi, Puma yagouaroundi

scientific article published on 01 November 2021

Evolution of a major drug metabolizing enzyme defect in the domestic cat and other felidae: phylogenetic timing and the role of hypercarnivory

scientific article published in 2011

Evolution: a new cat species emerges

scientific article published in December 2013

Evolutionary constraint and innovation across hundreds of placental mammals

scientific article published on 28 April 2023

Extensive population genetic structure in the giraffe

scientific article published in 2007

GADMA: Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data

scientific article published on 01 March 2020

Genome sequence, comparative analysis and haplotype structure of the domestic dog

scientific article

Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species

scientific article

Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens

scientific article published on 09 October 2020

Genomic analyses reveal range‐wide devastation of sea otter populations

scientific article published in 2022

Genomic legacy of the African cheetah, Acinonyx jubatus

scientific article

Haplotype-resolved assembly of diploid genomes without parental data

scientific article published in 2022

Insights into mammalian TE diversity through the curation of 248 genome assemblies ⬇️

Integrating gene annotation with orthology inference at scale ⬇️

scientific article published on 28 April 2023

Molecular systematics of the Hyaenidae: relationships of a relictual lineage resolved by a molecular supermatrix

scientific article

Multigene phylogeny of the Mustelidae: resolving relationships, tempo and biogeographic history of a mammalian adaptive radiation

scientific article published in 2008

Pangolin genomes and the evolution of mammalian scales and immunity

scientific article published on 10 August 2016

Parameterizing Pantherinae: de novo mutation rate estimates from Panthera and Neofelis pedigrees

Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences

scientific article

Phylogeny of the Procyonidae (Mammalia: Carnivora): molecules, morphology and the Great American Interchange

scientific article

Phylogeography and demographic history of the neotropical otter (Lontra longicaudis)

scientific article

Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours

scientific article published on 06 August 2018

Robust forensic matching of confiscated horns to individual poached African rhinoceros.

scientific article published in January 2018

Species-specific responses of Late Quaternary megafauna to climate and humans

scientific article (publication date: 2 November 2011)

The Population Origins and Expansion of Feral Cats in Australia

scientific article published on 7 December 2015

The contribution of historical processes to contemporary extinction risk in placental mammals ⬇️

The evolutionary history of extinct and living lions

scientific article published on 04 May 2020

The functional and evolutionary impacts of human-specific deletions in conserved elements ⬇️

The tiger genome and comparative analysis with lion and snow leopard genomes

scientific article

Three-dimensional genome rewiring in loci with human accelerated regions ⬇️

scientific article published on 28 April 2023

Tissue sampling methods and standards for vertebrate genomics

scientific article (publication date: 12 July 2012)

Towards complete and error-free genome assemblies of all vertebrate species

scientific article

Type I Sts Markers Are More Informative than Cytochrome b in Phylogenetic Reconstruction of the Mustelidae (Mammalia: Carnivora) ⬇️

scientific article (publication date: October 2003)

Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations

scientific article published on 05 June 2019

Whole-genome analyses resolve early branches in the tree of life of modern birds

scientific article

List of works by Klaus-Peter Koepfli

A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships ⬇️

Annotated features of domestic cat - Felis catus genome

Aquatic Adaptation and Depleted Diversity: A Deep Dive into the Genomes of the Sea Otter and Giant Otter

Author Correction: Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours

Blue Turns to Gray: Paleogenomic Insights into the Evolutionary History and Extinction of the Blue Antelope (Hippotragus leucophaeus)

Blue turns to grey - Palaeogenomic insights into the evolutionary history and extinction of the blue antelope ( Hippotragus leucophaeus )

Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates

Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates

Chromosome-length genome assembly and karyotype of the endangered black-footed ferret (<i>Mustela nigripes</i>)

Chromosomer: a reference-based genome arrangement tool for producing draft chromosome sequences

Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs ⬇️

Comparison of genomic diversity and structure of sable antelope (Hippotragus niger) in zoos, conservation centers, and private ranches in North America

Darwinian genomics and diversity in the tree of life

De novo sequencing, assembly and analysis of eight different transcriptomes from the Malayan pangolin

Draft de novo Genome Assembly of the Elusive Jaguarundi, Puma yagouaroundi

Evolution of a major drug metabolizing enzyme defect in the domestic cat and other felidae: phylogenetic timing and the role of hypercarnivory

Evolution: a new cat species emerges

Evolutionary constraint and innovation across hundreds of placental mammals

Extensive population genetic structure in the giraffe

GADMA: Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data

Genome sequence, comparative analysis and haplotype structure of the domestic dog

Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species

Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens

Genomic analyses reveal range‐wide devastation of sea otter populations

Genomic legacy of the African cheetah, Acinonyx jubatus

Haplotype-resolved assembly of diploid genomes without parental data

Insights into mammalian TE diversity through the curation of 248 genome assemblies ⬇️

Integrating gene annotation with orthology inference at scale ⬇️

Molecular systematics of the Hyaenidae: relationships of a relictual lineage resolved by a molecular supermatrix

Multigene phylogeny of the Mustelidae: resolving relationships, tempo and biogeographic history of a mammalian adaptive radiation

Pangolin genomes and the evolution of mammalian scales and immunity

Parameterizing Pantherinae: de novo mutation rate estimates from Panthera and Neofelis pedigrees

Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences

Phylogeny of the Procyonidae (Mammalia: Carnivora): molecules, morphology and the Great American Interchange

Phylogeography and demographic history of the neotropical otter (Lontra longicaudis)

Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours

Robust forensic matching of confiscated horns to individual poached African rhinoceros.

Species-specific responses of Late Quaternary megafauna to climate and humans

The Population Origins and Expansion of Feral Cats in Australia

The contribution of historical processes to contemporary extinction risk in placental mammals ⬇️

The evolutionary history of extinct and living lions

The functional and evolutionary impacts of human-specific deletions in conserved elements ⬇️

The tiger genome and comparative analysis with lion and snow leopard genomes

Three-dimensional genome rewiring in loci with human accelerated regions ⬇️

Tissue sampling methods and standards for vertebrate genomics

Towards complete and error-free genome assemblies of all vertebrate species

Type I Sts Markers Are More Informative than Cytochrome b in Phylogenetic Reconstruction of the Mustelidae (Mammalia: Carnivora) ⬇️

Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations

Whole-genome analyses resolve early branches in the tree of life of modern birds