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List of works by Johannes Griss

2016 update of the PRIDE database and its related tools

scientific article

2016 update of the PRIDE database and its related tools.

scientific article published on 28 September 2016

A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics

publication published on 13 May 2022

A clinical trial of a whole-virus H5N1 vaccine derived from cell culture.

scientific article

A posteriori quality control for the curation and reuse of public proteomics data

scientific article

A proteomics sample metadata representation for multiomics integration and big data analysis

scientific article published in 2021

A rare bullous variant of dermatitis herpetiformis

scientific article published on 4 June 2015

Analysis of the tryptic search space in UniProt databases.

scientific article

Autoantibody Levels and Clinical Disease Severity in Patients with Pemphigus: Comparison of Aggregated Anti-desmoglein ELISA Values and Indirect Immunofluorescence Titres

scientific article published on May 2015

B cells sustain inflammation and predict response to immune checkpoint blockade in human melanoma

scientific article published on 13 September 2019

B cells sustain inflammation and predict response to immune checkpoint blockade in human melanoma: Supplementary Figures and Methods

BioContainers: An open-source and community-driven framework for software standardization

scientific article

Cleaning out the Litterbox of Proteomic Scientists' Favorite Pet: Optimized Data Analysis Avoiding Trypsin Artifacts

scientific article

Comprehensive comparative and semiquantitative proteome of a very low number of native and matched epstein-barr-virus-transformed B lymphocytes infiltrating human melanoma

scientific article published on 06 May 2014

Consequences of the discontinuation of the International Protein Index (IPI) database and its substitution by the UniProtKB "complete proteome" sets.

scientific article published on 17 October 2011

Cytoplasmic proteome and secretome profiles of differently stimulated human dendritic cells

scientific article published on June 2009

Digital image analysis improves precision of programmed death ligand 1 (PD-L1) scoring in cutaneous melanoma

scientific article published on 16 April 2018

Expanding the use of spectral libraries in proteomics

Functional classification of cellular proteome profiles support the identification of drug resistance signatures in melanoma cells.

scientific article published on 19 June 2013

Future Prospects of Spectral Clustering Approaches in Proteomics

scholarly article by Yasset Perez-Riverol published in July 2018

GPDE: A biological proteomic database for biomarker discovery and evaluation

scholarly article by Johannes Griss et al published 27 January 2011 in Proteomics

Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification.

scientific article

Identifying novel biomarkers through data mining-a realistic scenario?

scientific article

Introducing a new parameter for quality control of proteome profiles: consideration of commonly expressed proteins

scientific article published in April 2009

Introducing the CPL/MUW proteome database: interpretation of human liver and liver cancer proteome profiles by referring to isolated primary cells

scientific article published in June 2009

IsoProt: A Complete and Reproducible Workflow To Analyze iTRAQ/TMT Experiments

scientific article published on 20 March 2019

IsoProt: A complete and reproducible workflow to analyse iTRAQ/TMT experiments

Molecular Classification of Tumor Cells in a Patient with Intravascular Large B-Cell Lymphoma.

scientific article

Orally administered rapamycin, dacarbazine or both for treatment of human melanoma evaluated in severe combined immunodeficiency mice

scientific article published on 23 September 2008

PRIDE Cluster: building a consensus of proteomics data

scientific article

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets

scientific article

PRIDE Inspector: a tool to visualize and validate MS proteomics data

scientific article (publication date: 8 February 2012)

Proteome signatures of inflammatory activated primary human peripheral blood mononuclear cells

scientific article

Published and perished? The influence of the searched protein database on the long-term storage of proteomics data

scientific article (publication date: September 2011)

ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis

scientific article published on 09 September 2020

ReactomeGSA: new features to simplify public data reuse

Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets

scientific article

Response to “Comparison and Evaluation of Clustering Algorithms for Tandem Mass Spectra”

scholarly article by Johannes Griss et al published 23 April 2018 in Journal of Proteome Research

STAT3-dependent analysis reveals PDK4 as independent predictor of recurrence in prostate cancer

scientific article published on 01 April 2020

Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization

scientific article published on 02 July 2019

Spectral Clustering Improves Label-Free Quantification of Low-Abundant Proteins

scientific article published on 22 March 2019

Spectral library searching in proteomics

scientific article published on 30 November 2015

The PRIDE database and related tools and resources in 2019: improving support for quantification data

scientific article

The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium

scientific article (publication date: December 2012)

The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

scientific article (publication date: 2013)

The mzIdentML data standard for mass spectrometry-based proteomics results

scientific article (publication date: July 2012)

The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience

scientific article

The reactome pathway knowledgebase 2022

scientific article published on 14 October 2021

Tumor-associated B cells in cutaneous primary melanoma and improved clinical outcome

scientific article published on 20 April 2016

Tumor-associated B-cells induce tumor heterogeneity and therapy resistance

scientific article published on 19 September 2017

jmzReader: A Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats

scientific article

jmzTab: a java interface to the mzTab data standard

scientific article

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