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List of works by Ron Kikinis

3D Exploration of the Brainstem in 50-Micron Resolution MRI

scientific article published on 23 September 2020

3D Slicer as a tool for interactive brain tumor segmentation ⬇️

scientific article published on January 1, 2011

3D Slicer as an image computing platform for the Quantitative Imaging Network

scientific article (publication date: November 2012)

3D modeling and virtual endoscopy of the small bowel based on magnetic resonance imaging in patients with inflammatory bowel disease

scientific article published in September 2002

A 3D interactive multi-object segmentation tool using local robust statistics driven active contours

scientific article (publication date: August 2012)

A Bayesian model for joint segmentation and registration

scientific article published on 7 February 2006

A CT database for research, development and education: concept and potential.

scientific article published on March 2007

A Survey of auditory display in image-guided interventions.

scientific article

A comparison of biventricular and conventional transvenous defibrillation: a computational study using patient derived models.

scientific article

A computer-assisted approach to planning multidimensional distraction osteogenesis

scientific article published in March 2005

A device guidance method for organ motion compensation in MRI-guided therapy

scientific article published on 11 October 2007

A diffusion tensor imaging study of the anterior limb of the internal capsule in schizophrenia

scientific article

A global goodness-of-fit test for receiver operating characteristic curve analysis via the bootstrap method

scientific article published on 9 March 2005

A hierarchical algorithm for MR brain image parcellation

scientific article published on September 2007

A new metric for detecting change in slowly evolving brain tumors: validation in meningioma patients.

scientific article

A new visualization technique for laparoscopic ultrasonography

scientific article published in July 2004

A prototype symbolic model of canonical functional neuroanatomy of the motor system

scientific article

A review of diffusion tensor imaging studies in schizophrenia

scientific article

A segmentation and reconstruction technique for 3D vascular structures

scientific article published on 01 January 2005

A statistically based flow for image segmentation

scientific article published on September 2004

A unifying approach to registration, segmentation, and intensity correction

scientific article published on 01 January 2005

ANATOMICAL GUIDED SEGMENTATION WITH NON-STATIONARY TISSUE CLASS DISTRIBUTIONS IN AN EXPECTATION-MAXIMIZATION FRAMEWORK.

scientific article published on April 2004

AUTOMATIC AIRWAY ANALYSIS FOR GENOME-WIDE ASSOCIATION STUDIES IN COPD.

scientific article published on January 2012

Accurate airway wall estimation using phase congruency

scientific article published on 01 January 2006

Active mean fields: solving the mean field approximation in the level set framework

scientific article published on January 2007

Age-related deficits in fronto-temporal connections in schizophrenia: a diffusion tensor imaging study

scientific article published on 27 May 2008

Aging influences on pharyngeal anatomy and physiology: the predisposition to pharyngeal collapse

scientific article published on January 2006

Amygdala-hippocampal shape differences in schizophrenia: the application of 3D shape models to volumetric MR data

scientific article

An Automated Method for Segmenting White Matter Lesions through Multi-Level Morphometric Feature Classification with Application to Lupus

scientific article

An MRI study of spatial probability brain map differences between first-episode schizophrenia and normal controls

scientific article published on July 2004

An annotated test-retest collection of prostate multiparametric MRI

An in vivo MRI study of prefrontal cortical complexity in first-episode psychosis

scientific article published on January 2005

Analysis of skeletal movements in mandibular distraction osteogenesis

scientific article

Anatomic and physiologic predictors of apnea severity in morbidly obese subjects

scientific article published in March 2003

Anatomical assessment of trigeminal nerve tractography using diffusion MRI: A comparison of acquisition b-values and single- and multi-fiber tracking strategies

scientific article published on 08 January 2020

Anterior limb of the internal capsule in schizophrenia: a diffusion tensor tractography study

scientific article

Application of Open Source Image Guided Therapy Software in MR-guided Therapies

scientific article published on 01 January 2007

Application of tolerance limits to the characterization of image registration performance

scientific article

Association between smaller left posterior superior temporal gyrus volume on magnetic resonance imaging and smaller left temporal P300 amplitude in first-episode schizophrenia

scientific article published in April 2002

Atlas-guided segmentation of vervet monkey brain MRI

scientific article (publication date: 2011)

Auditory display as feedback for a novel eye-tracking system for sterile operating room interaction

scientific article

Auditory display for fluorescence-guided open brain tumor surgery

scientific article

Auditory feedback to support image-guided medical needle placement.

scientific article published on 17 February 2017

Augmented reality visualization for CT-guided interventions: system description, feasibility, and initial evaluation in an abdominal phantom

scientific article published on 23 May 2006

Augmenting intraoperative MRI with preoperative fMRI and DTI by biomechanical simulation of brain deformation

scholarly article published 30 May 2003

Automatic Needle Segmentation and Localization in MRI with 3D Convolutional Neural Networks: Application to MRI-targeted Prostate Biopsy

scientific article published on 18 October 2018

Biomechanical model as a registration tool for image-guided neurosurgery: evaluation against BSpline registration

scientific article published on 15 June 2013

Biomechanical model for computing deformations for whole-body image registration: A meshless approach

scientific article published on 21 January 2016

Biomechanical modeling and computer simulation of the brain during neurosurgery

scientific article published on 05 September 2019

Bolus arrival time and its effect on tissue characterization with dynamic contrast-enhanced magnetic resonance imaging.

scientific article

Brain Shift Computation Using a Fully Nonlinear Biomechanical Model

article

CT-based preoperative analysis of scapula morphology and glenohumeral joint geometry.

scientific article

Capturing intraoperative deformations: research experience at Brigham and Women's Hospital

scientific article

Cavum septi pellucidi in first-episode schizophrenia and first-episode affective psychosis: an MRI study

scientific article

Challenges in image-guided therapy system design

scientific article (publication date: 2007)

Cingulate fasciculus integrity disruption in schizophrenia: a magnetic resonance diffusion tensor imaging study

scientific article

Clinical application of curvilinear distraction osteogenesis for correction of mandibular deformities

scientific article published on May 2009

Comparison of acute and chronic traumatic brain injury using semi-automatic multimodal segmentation of MR volumes

scientific article published on 21 September 2011

Comparison of different registration methods for surgical navigation in cranio-maxillofacial surgery

scientific article

Comparison of single-shot echo-planar and line scan protocols for diffusion tensor imaging

scientific article published on February 2004

Computational neuroanatomy: ontology-based representation of neural components and connectivity

scientific article

Computed tomographic measures of pulmonary vascular morphology in smokers and their clinical implications.

scientific article published on July 2013

Coupling Statistical Segmentation and PCA Shape Modeling

article

Creation of a novel trigeminal tractography atlas for automated trigeminal nerve identification

scientific article published on 20 June 2020

Cross-View Neuroimage Pattern Analysis in Alzheimer's Disease Staging

scientific article published on 23 February 2016

DICOM Re-encoding of Volumetrically Annotated Lung Imaging Data Consortium (LIDC) Nodules

scientific article published on 09 August 2020

DICOM for quantitative imaging biomarker development: A standards based approach to sharing clinical data and structured PET/CT analysis results in head and neck cancer research

article

DICOM for quantitative imaging biomarker development: A standards based approach to sharing of clinical data and structured PET/CT analysis results in head and neck cancer research

DICOM for quantitative imaging biomarker development: A standards based approach to sharing of clinical data and structured PET/CT analysis results in head and neck cancer research

article

DICOM for quantitative imaging biomarker development: a standards based approach to sharing clinical data and structured PET/CT analysis results in head and neck cancer research

scientific article

Deep Learning Methodology for Differentiating Glioma Recurrence From Radiation Necrosis Using Multimodal Magnetic Resonance Imaging: Algorithm Development and Validation

scientific article published on 17 November 2020

Deficits of motion integration and segregation in patients with unilateral extrastriate lesions

scientific article published on 23 June 2005

Dense deformation field estimation for brain intraoperative images registration

Design of an Ultrasound-Navigated Prostate Cancer Biopsy System for Nationwide Implementation in Senegal

Detection and analysis of statistical differences in anatomical shape

scientific article published on February 2005

Detection of Brain Metastases with Deep Learning Single-Shot Detector Algorithms

scientific article published on 17 March 2020

Development of a surgical navigation system based on 3D Slicer for intraoperative implant placement surgery

scientific article published on 18 January 2017

Device connectivity for image-guided medical applications.

scientific article published in January 2007

Dictionary Pruning with Visual Word Significance for Medical Image Retrieval.

scientific article

Differences and similarities in insular and temporal pole MRI gray matter volume abnormalities in first-episode schizophrenia and affective psychosis

scientific article

Diffusion Tensor and Functional MRI Fusion with Anatomical MRI for Image-Guided Neurosurgery

article

Diffusion tensor imaging and its application to neuropsychiatric disorders

scientific article

Enhanced registration of ultrasound volumes by segmentation of resection cavity in neurosurgical procedures

scientific article published on 07 October 2020

Errors in Quantitative Image Analysis due to Platform-Dependent Image Scaling.

scientific article

Evaluation of Brain MRI Alignment with the Robust Hausdorff Distance Measures

Excessive extracellular volume reveals a neurodegenerative pattern in schizophrenia onset

scientific article

Extended Broca's area in the functional connectome of language in adults: combined cortical and subcortical single-subject analysis using fMRI and DTI tractography

scientific article published on 22 September 2012

Finite-element-method (FEM) model generation of time-resolved 3D echocardiographic geometry data for mitral-valve volumetry

scientific article

Forward and inverse electroencephalographic modeling in health and in acute traumatic brain injury ⬇️

scientific article published on 06 June 2013

Fronto-temporal disconnectivity in schizotypal personality disorder: a diffusion tensor imaging study

scientific article

Fully automatic catheter segmentation in MRI with 3D convolutional neural networks: application to MRI-guided gynecologic brachytherapy

scientific article published on 14 August 2019

Fusiform gyrus volume reduction and facial recognition in chronic schizophrenia

scientific article published in April 2003

Fusiform gyrus volume reduction in first-episode schizophrenia: a magnetic resonance imaging study

scientific article published in September 2002

GBM volumetry using the 3D Slicer medical image computing platform.

scientific article published on January 2013

Genetic contributions to changes of fiber tracts of ventral visual stream in 22q11.2 deletion syndrome

scientific article published on September 2013

High-resolution line scan diffusion tensor MR imaging of white matter fiber tract anatomy.

scientific article

Human Cochlear Nucleus on 7 Tesla Diffusion Tensor Imaging: Insights Into Micro-anatomy and Function for Auditory Brainstem Implant Surgery

scientific article published on 31 January 2020

Hybrid Formulation of the Model-Based Non-rigid Registration Problem to Improve Accuracy and Robustness

Image registration for targeted MRI‐guided transperineal prostate biopsy ⬇️

scientific article (publication date: October 2012)

Image-guided neurosurgery at Brigham and Women's Hospital

scientific article published in September 2006

Imaging and visual analysis---Toward real-time image guided neurosurgery using distributed and grid computing

Impact of nonrigid motion correction technique on pixel-wise pharmacokinetic analysis of free-breathing pulmonary dynamic contrast-enhanced MR imaging

scientific article

Implementing the DICOM Standard for Digital Pathology

scholarly article by Markus D Herrmann et al published 2018 in Journal of pathology informatics

In vivo Exploration of the Connectivity between the Subthalamic Nucleus and the Globus Pallidus in the Human Brain Using Multi-Fiber Tractography

scientific article published on January 2016

Incorporating Non-rigid Registration into Expectation Maximization Algorithm to Segment MR Images

Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience.

scientific article published on 7 July 2016

Instrument-mounted displays for reducing cognitive load during surgical navigation

scientific article

Interaction with Volume-Rendered Three-Dimensional Echocardiographic Images in Virtual Reality

scientific article published on 06 August 2018

Interactive Diffusion Tensor Tractography Visualization for Neurosurgical Planning ⬇️

scientific article published on February 1, 2011

Laboratory Investigation:Automatic Identification of Gray Matter Structures from MRI to Improve the Segmentation of White Matter Lesions

article by Simon K. Warfield et al published January 1995 in Computer Aided Surgery

Level set-based integration of segmentation and computational fluid dynamics for flow correction in phase contrast angiography

scientific article published in December 2003

Liver metastases: 3D shape-based analysis of CT scans for detection of local recurrence after radiofrequency ablation

scientific article published on 23 August 2006

Lobar distribution of lesion volumes in late-life depression: the Biomedical Informatics Research Network (BIRN).

scientific article

Localized Sparse Code Gradient in Alzheimer's disease staging

scientific article

Logarithm odds maps for shape representation

article

Lowering the barriers inherent in translating advances in neuroimage analysis to clinical research applications

scientific article

Lung extraction, lobe segmentation and hierarchical region assessment for quantitative analysis on high resolution computed tomography images

scientific article published on 01 January 2009

MRI Atlas of the Human Deep Brain

scientific article published on 27 August 2019

MRI Brain Tumor Segmentation and Necrosis Detection Using Adaptive Sobolev Snakes

scientific article published on March 2014

MRI signal intensity based B-spline nonrigid registration for pre- and intraoperative imaging during prostate brachytherapy

scientific article published on November 2009

MRI study of caudate nucleus volume and its cognitive correlates in neuroleptic-naive patients with schizotypal personality disorder

scientific article

Magnetic resonance imaging based colonography for diagnosis and assessment of diverticulosis and diverticulitis

scientific article

Mapping connectivity damage in the case of Phineas Gage

scientific article published in 2012

Medical image segmentation using high-performance computer clusters

scholarly article published 28 May 2001

Method for combining information from white matter fiber tracking and gray matter parcellation

scientific article

Middle and inferior temporal gyrus gray matter volume abnormalities in chronic schizophrenia: an MRI study

scientific article published on September 2004

Middle and inferior temporal gyrus gray matter volume abnormalities in first-episode schizophrenia: an MRI study

scientific article published on December 2006

More accurate neuronavigation data provided by biomechanical modeling instead of rigid registration

scientific article

Morphological characteristics of brain tumors causing seizures

scientific article

Multi-Channel neurodegenerative pattern analysis and its application in Alzheimer's disease characterization

scientific article

Multidetector CT of the paranasal sinus: potential for radiation dose reduction

scientific article published in June 2007

Multifold Bayesian kernelization in Alzheimer's diagnosis

scientific article published on 01 January 2013

Multimodal Image-Based Virtual Reality Presurgical Simulation and Evaluation for Trigeminal Neuralgia and Hemifacial Spasm.

scientific article

Multimodal Registration of White Matter Brain Data via Optimal Mass Transport

Multimodal image registration for liver radioembolization planning and patient assessment

scientific article published on 22 October 2018

Multimodal neuroimaging computing: a review of the applications in neuropsychiatric disorders

scientific article

Multimodal neuroimaging computing: the workflows, methods, and platforms

scientific article

Multimodal neuroimaging feature learning for multiclass diagnosis of Alzheimer's disease ⬇️

scientific article

Multiresolution Signal Processing on Meshes for Automatic Pathological Shape Characterization

scholarly article by Sylvain Jaume et al published 2001 in Lecture Notes in Computer Science

NCI Imaging Data Commons

scientific article published on 15 June 2021

Neuroimaging of structural pathology and connectomics in traumatic brain injury: Toward personalized outcome prediction

scientific article

Non-rigid registration of a 3D ultrasound and a MR image data set of the female pelvic floor using a biomechanical model

scientific article

Occipital lobe gray matter volume in male patients with chronic schizophrenia: A quantitative MRI study

scientific article published on 9 March 2007

On describing human white matter anatomy: the white matter query language

scientific article published on 01 January 2013

Ontological labels for automated location of anatomical shape differences ⬇️

scientific article (publication date: June 2012)

Open Source Platform for Transperineal In-Bore MRI-Guided Targeted Prostate Biopsy

scientific article published on 23 May 2019

Oriented speckle reducing anisotropic diffusion

scientific article published in May 2007

Pairwise Latent Semantic Association for Similarity Computation in Medical Imaging

scientific article

Patient-specific biomechanical model as whole-body CT image registration tool

scientific article published on 30 January 2015

Patient-specific computational analysis of transvenous defibrillation: a comparison to clinical metrics in humans

scientific article published in June 2004

Patient-specific model of brain deformation: application to medical image registration

scientific article published on 6 May 2006

Patient-tailored connectomics visualization for the assessment of white matter atrophy in traumatic brain injury

scientific article published in 2012

Periventricular white matter injury in the premature infant is followed by reduced cerebral cortical gray matter volume at term

scientific article published on 01 November 1999

Pituitary adenoma volumetry with 3D Slicer

scientific article

Prefrontal cortical thickness in first-episode psychosis: a magnetic resonance imaging study

scientific article published on January 2004

Preliminary results of nonfluoroscopy-based 3D navigation for neurointerventional procedures

scientific article published in February 2007

Progressive decrease of left Heschl gyrus and planum temporale gray matter volume in first-episode schizophrenia: a longitudinal magnetic resonance imaging study

scientific article

Progressive decrease of left superior temporal gyrus gray matter volume in patients with first-episode schizophrenia

scientific article

Protrusion of hardware impairs forearm rotation after olecranon fixation. A report of two cases

scientific article published on March 2007

Psychoacoustical Interactive Sonification for Short Range Navigation

Quantitative Imaging Informatics for Cancer Research

scientific article published on 01 May 2020

Quantitative MR Imaging Assessment of Prostate Gland Deformation before and During MR Imaging–Guided Brachytherapy

article

Quantitative evaluation of angular measurements on plain radiographs in patients with slipped capital femoral epiphysis: a 3-dimensional analysis of computed tomography-based computer models of 46 femora

scientific article published on 01 April 2008

Range of curvilinear distraction devices required for treatment of mandibular deformities

scientific article published in February 2006

Range of motion after computed tomography-based simulation of intertrochanteric corrective osteotomy in cases of slipped capital femoral epiphysis: comparison of uniplanar flexion osteotomy and multiplanar flexion, valgisation, and rotational osteot

scientific article published on June 2009

Real-time registration of volumetric brain MRI by biomechanical simulation of deformation during image guided neurosurgery

scholarly article by Simon K. Warfield et al published July 2002 in Computing And Visualization In Science

Real-time simulation and visualization of volumetric brain deformation for image-guided neurosurgery

scholarly article published 28 May 2001

Registration and fusion of CT and MRI of the temporal bone

scientific article published in May 2005

Relationship Between White Matter Integrity, Attention, and Memory in Schizophrenia: A Diffusion Tensor Imaging Study

scientific article

Repeatability of Multiparametric Prostate MRI Radiomics Features

scientific article published on 01 July 2019

Reproducibility of functional MR imaging: preliminary results of prospective multi-institutional study performed by Biomedical Informatics Research Network

scientific article

Revisiting Surgical Instrument Segmentation Without Human Intervention: A Graph Partitioning View

scientific article published on 31 October 2024

Rigid overlay of volume sonography and MR image data of the female pelvic floor using a fiducial based alignment--feasibility due to a case series

scientific article

Robust Radiomics feature quantification using semiautomatic volumetric segmentation

scientific article

Robust nonrigid registration to capture brain shift from intraoperative MRI

scientific article

Segmentation of Nerve Bundles and Ganglia in Spine MRI Using Particle Filters ⬇️

scientific article published on 01 January 2011

Segmentation-based registration of ultrasound volumes for glioma resection in image-guided neurosurgery

scientific article published on 07 August 2019

Selection of Fitting Model and Arterial Input Function for Repeatability in Dynamic Contrast-Enhanced Prostate MRI

scientific article published on 20 November 2018

Serial registration of intraoperative MR images of the brain

scientific article published in December 2002

Shape Based Segmentation of Anatomical Structures in Magnetic Resonance Images

article

Shape abnormalities of caudate nucleus in schizotypal personality disorder

scientific article

Shape differences in the corpus callosum in first-episode schizophrenia and first-episode psychotic affective disorder

scientific article

Shape of caudate nucleus and its cognitive correlates in neuroleptic-naive schizotypal personality disorder

scientific article published on January 2004

SlicerDMRI: Diffusion MRI and Tractography Research Software for Brain Cancer Surgery Planning and Visualization

scientific article published on 01 March 2020

SlicerDMRI: Open Source Diffusion MRI Software for Brain Cancer Research

scientific article

Spatial normalization of diffusion tensor MRI using multiple channels

scientific article

Spiny versus stubby: 3D reconstruction of human myenteric (type I) neurons

scientific article published on 20 September 2008

Statistical validation based on parametric receiver operating characteristic analysis of continuous classification data

scientific article

Statistical validation of image segmentation quality based on a spatial overlap index

scientific article

Stochastic tractography study of Inferior Frontal Gyrus anatomical connectivity in schizophrenia

scientific article

Structural modeling of dynamic changes in memory and brain structure using longitudinal data from the normative aging study

scientific article

Supratentorial low-grade glioma resectability: statistical predictive analysis based on anatomic MR features and tumor characteristics

scientific article

Surgical data science for next-generation interventions

scientific article published on 01 September 2017

Systemic chemotherapy decreases brain glucose metabolism

scientific article

The DTI Challenge: Toward Standardized Evaluation of Diffusion Tensor Imaging Tractography for Neurosurgery

scientific article

The National Alliance for Medical Image Computing, a roadmap initiative to build a free and open source software infrastructure for translational research in medical image analysis

scientific article (publication date: 2012)

The Open Anatomy Browser: A Collaborative Web-Based Viewer for Interoperable Anatomy Atlases

scientific article

The male predisposition to pharyngeal collapse: importance of airway length

scientific article published in November 2002

The white matter query language: a novel approach for describing human white matter anatomy

scientific article

Three validation metrics for automated probabilistic image segmentation of brain tumours

scientific article published on April 2004

Three-dimensional multi-scale line filter for segmentation and visualization of curvilinear structures in medical images

scientific article (publication date: June 1998)

Tumor detection by virtual cystoscopy with color mapping of bladder wall thickness

scientific article published on 01 February 2002

Tumor detection in the bladder wall with a measurement of abnormal thickness in CT scans

scientific article published in March 2003

Uncertainty-aware asynchronous scattered motion interpolation using Gaussian process regression

scientific article published on 21 December 2018

Uncinate fasciculus findings in schizophrenia: a magnetic resonance diffusion tensor imaging study

scientific article

Unsupervised tissue type segmentation of 3D dual-echo MR head data

article

Using 3D Modeling Techniques to Enhance Teaching of Difficult Anatomical Concepts

scientific article

Using the logarithm of odds to define a vector space on probabilistic atlases

scientific article published on 22 June 2007

Variations of dynamic contrast-enhanced magnetic resonance imaging in evaluation of breast cancer therapy response: a multicenter data analysis challenge

scientific article

Volumetric CT-based segmentation of NSCLC using 3D-Slicer

scientific article

Volumetric assessment of tumor infiltration of adjacent white matter based on anatomic MRI and diffusion tensor tractography

scientific article published on April 2007

White matter bundle registration and population analysis based on Gaussian processes.

scientific article published on January 2011

White matter hemisphere asymmetries in healthy subjects and in schizophrenia: a diffusion tensor MRI study

scientific article

Widespread white matter degeneration preceding the onset of dementia

scientific article

Workflow modeling and analysis of computer guided prostate brachytherapy under MR imaging control

scientific article published on 01 January 2004

dcmqi: An Open Source Library for Standardized Communication of Quantitative Image Analysis Results Using DICOM.

scientific article published on November 2017

iTools: a framework for classification, categorization and integration of computational biology resources

scientific article published in 2008

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