Search filters

List of works by John Markley

242. Evaluating the Effectiveness of Antimicrobial Restriction at an Academic Medical Center

252. Relative Use of Carbapenems in Immunocompromised Patients

A graphical approach to tracking and reporting target status in structural genomics.

scientific article

ADAPT-NMR 3.0: utilization of BEST-type triple-resonance NMR experiments to accelerate the process of data collection and assignment

scientific article

ADAPT-NMR Enhancer: complete package for reduced dimensionality in protein NMR spectroscopy ⬇️

scientific article published on December 7, 2012

Acute Cardiac Tamponade: An Unusual Cause of Acute Renal Failure

scientific article published on 27 January 2012

Addressing the intrinsic disorder bottleneck in structural proteomics.

scientific article

An NMR structural study of nickel-substituted rubredoxin

scientific article

An automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal database

scientific article

Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB)

scientific article published on 08 April 2019

Applications of Parametrized NMR Spin Systems of Small Molecules

scholarly article by Hesam Dashti et al published 18 September 2018 in Analytical Chemistry

Assignments of RNase A by ADAPT-NMR and enhancer

scientific article

Auto-Induction Medium Containing Glyphosate for High-Level Incorporation Unusual Aromatic Amino Acids into Proteins ⬇️

scientific article published on September 1, 2010

Auto-induction medium for the production of [U-15N]- and [U-13C, U-15N]-labeled proteins for NMR screening and structure determination

scientific article

Backbone 1H, 15N and 13C assignments for the subunit a of the E. coli ATP synthase

scientific article

BioMagResBank

scientific article (publication date: 2008)

BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositions

scientific article

BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank

scientific article

BioMagResBank databases DOCR and FRED containing converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures

scientific article

Biomolecular NMR: Past and future

scientific article published on 08 May 2017

Brain energetics and tolerance to anoxia in deep hypothermia

scientific article

Brazzein, a small, sweet protein: effects of mutations on its structure, dynamics and functional properties

scientific article

Broadening the functionality of a J-protein/Hsp70 molecular chaperone system

scientific article published on 30 October 2017

Carbon-13 NMR method for the detection of correlated hydrogen exchange at adjacent backbone peptide amides and its application to hydrogen exchange in five antiparallel beta strands within the hydrophobic core of Streptomyces subtilisin inhibitor (S

scientific article published on September 2005

Carbonyl carbon label selective (CCLS) 1H-15N HSQC experiment for improved detection of backbone 13C-15N cross peaks in larger proteins

scientific article published on 9 September 2007

Cell-free protein synthesis technology in NMR high-throughput structure determination

scientific article published in January 2010

Changes in hydrogen-bond strengths explain reduction potentials in 10 rubredoxin variants

scientific article

Characterization of the [2Fe-2S] cluster of Escherichia coli transcription factor IscR.

scientific article

Chemical Genomics, Structure Elucidation, and in Vivo Studies of the Marine-Derived Anticlostridial Ecteinamycin ⬇️

scientific article published on 14 July 2017

Cleavage of peptide bonds bearing ionizable amino acids at P1 by serine proteases with hydrophobic S1 pocket ⬇️

scientific article published on August 26, 2010

Collagen stability: insights from NMR spectroscopic and hybrid density functional computational investigations of the effect of electronegative substituents on prolyl ring conformations

scientific article published in March 2002

Combined sodium hydroxide and ammonium hydroxide pretreatment of post-biogas digestion dairy manure fiber for cost effective cellulosic bioethanol production

article published in 2014

Comment on on the propagation of errors by Jaskolski (2013).

scientific article published on 19 November 2013

Comment on timely deposition of macromolecular structures is necessary for peer review by Joosten et al. (2013).

scientific article published on 19 November 2013

Construction and performance of an NMR tube with a sample cavity formed within magnetic susceptibility-matched glass ⬇️

scientific article published on January 13, 2011

Correction to SimultaneousQuantification and Identificationof Individual Chemicals in Metabolite Mixtures by Two-Dimensional Extrapolated Time-Zero 1H–13C HSQC (HSQC0).

scientific article published on 22 February 2012

Correlation of the Sweetness of Variants of the Protein Brazzein with Patterns of Hydrogen Bonds Detected by NMR Spectroscopy ⬇️

scientific article published on May 5, 2003

Critical regions for the sweetness of brazzein

scientific article

Crystallographic studies of V44 mutants of Clostridium pasteurianum rubredoxin: effects of side-chain size on reduction potential

scientific article published in November 2004

Data management in structural genomics: an overview

scientific article

Databases and Software for NMR-Based Metabolomics

scientific article published on January 2013

Deconvolution of Two-Dimensional NMR Spectra by Fast Maximum Likelihood Reconstruction: Application to Quantitative Metabolomics ⬇️

scientific article published on May 26, 2011

Description of a restriction program for gram-positive antimicrobial agents at an academic medical center

scientific article published on 11 October 2017

Differences in the structure and dynamics of the apo- and palmitate-ligated forms of Aedes aegypti sterol carrier protein 2 (AeSCP-2).

scientific article

Direct NMR detection of the binding of functional ligands to the human sweet receptor, a heterodimeric family 3 GPCR.

scientific article published on 16 May 2008

Disordered form of the scaffold protein IscU is the substrate for iron-sulfur cluster assembly on cysteine desulfurase ⬇️

scientific article published on December 27, 2011

Dosage Effects of Salt and pH Stresses on Saccharomyces cerevisiae as Monitored via Metabolites by Using Two Dimensional NMR Spectroscopy

scientific article

Dynamic structural changes underpin photoconversion of a blue/green cyanobacteriochrome between its dark and photoactivated states.

scientific article

Dynamics and metal ion binding in the U6 RNA intramolecular stem-loop as analyzed by NMR.

scientific article published on 2 September 2005

Early formation of a beta hairpin during folding of staphylococcal nuclease H124L as detected by pulsed hydrogen exchange

scientific article

Efficient and rapid protein expression and purification of small high disulfide containing sweet protein brazzein in E. coli

scientific article published on 3 December 2007

Efficient stable isotope labeling and purification of vitamin D receptor from inclusion bodies

scientific article

Electron Transfer Mechanism of the Rieske Protein from Thermus thermophilus from Solution Nuclear Magnetic Resonance Investigations ⬇️

scientific article published on April 15, 2013

Empirical correlation between protein backbone 15N and 13C secondary chemical shifts and its application to nitrogen chemical shift re-referencing

scientific article

Evidence for a strong hydrogen bond in the catalytic dyad of transition-state analogue inhibitor complexes of chymotrypsin from proton-triton NMR isotope shifts

scientific article published in April 2002

Expression platforms for producing eukaryotic proteins: a comparison of E. coli cell-based and wheat germ cell-free synthesis, affinity and solubility tags, and cloning strategies

scientific article published on 9 April 2015

Fast automated protein NMR data collection and assignment by ADAPT-NMR on Bruker spectrometers

scientific article

Function and solution structure of the Arabidopsis thaliana RALF8 peptide

scientific article published on 01 June 2019

HIFI-C: a robust and fast method for determining NMR couplings from adaptive 3D to 2D projections

article published in 2007

High-Pressure Denaturation of Staphylococcal Nuclease Proline-to-Glycine Substitution Mutants†

article

High-resolution iterative frequency identification for NMR as a general strategy for multidimensional data collection

scientific article

High-throughput automated platform for nuclear magnetic resonance-based structural proteomics

scientific article

How community has shaped the Protein Data Bank

scientific article

Human Cancer Antigen Globo H Is a Cell-Surface Ligand for Human Ribonuclease 1.

scientific article

Human Mitochondrial Ferredoxin 1 (FDX1) and Ferredoxin 2 (FDX2) Both Bind Cysteine Desulfurase and Donate Electrons for Iron-Sulfur Cluster Biosynthesis.

scientific article published on 21 December 2016

Human mitochondrial chaperone (mtHSP70) and cysteine desulfurase (NFS1) bind preferentially to the disordered conformation, whereas co-chaperone (HSC20) binds to the structured conformation of the iron-sulfur cluster scaffold protein (ISCU).

scientific article published on 12 August 2013

Hydrogen exchange during cell-free incorporation of deuterated amino acids and an approach to its inhibition

scientific article published on 8 October 2011

Hyperfine-Shifted 13C Resonance Assignments in an Iron−Sulfur Protein with Quantum Chemical Verification: Aliphatic C−H···S 3-Center−4-Electron Interactions ⬇️

scientific article published on January 5, 2011

Hyperfine-shifted (13)C and (15)N NMR signals from Clostridium pasteurianum rubredoxin: extensive assignments and quantum chemical verification

scientific article published on October 2009

I-PINE web server: an integrative probabilistic NMR assignment system for proteins

scientific article published on 01 May 2019

ISCU interacts with NFU1, and ISCU[4Fe-4S] transfers its Fe-S cluster to NFU1 leading to the production of holo-NFU1

scientific article published on 06 March 2020

ISCU(M108I) and ISCU(D39V) Differ from Wild-Type ISCU in Their Failure To Form Cysteine Desulfurase Complexes Containing Both Frataxin and Ferredoxin.

scientific article

Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays

scientific article

In support of the BMRB.

scientific article published in September 2012

Increasing rigor in NMR-based metabolomics through validated and open source tools

scientific article published on 16 September 2016

Integrative NMR for biomolecular research

scientific article

Interactions between metal-binding domains modulate intracellular targeting of Cu(I)-ATPase ATP7B, as revealed by nanobody binding

scientific article

Interactions between the human sweet-sensing T1R2-T1R3 receptor and sweeteners detected by saturation transfer difference NMR spectroscopy

scientific article

Interactions of iron-bound frataxin with ISCU and ferredoxin on the cysteine desulfurase complex leading to Fe-S cluster assembly.

scientific article published on 15 March 2018

Intrinsically disordered  -subunit of cGMP phosphodiesterase encodes functionally relevant transient secondary and tertiary structure

scientific article

Key amino acid residues involved in multi-point binding interactions between brazzein, a sweet protein, and the T1R2-T1R3 human sweet receptor

scientific article

Ligand-Specific Structural Changes in the Vitamin D Receptor in Solution ⬇️

scientific article published on December 5, 2011

Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identifications

scientific article

Macromolecular structure determination by NMR spectroscopy.

scientific article

Measurement of Absolute Concentrations of Individual Compounds in Metabolite Mixtures by Gradient-Selective Time-Zero 1H–13C HSQC with Two Concentration References and Fast Maximum Likelihood Reconstruction Analysis ⬇️

scientific article published on November 15, 2011

Metabolic Changes in Synaptosomes in an Animal Model of Schizophrenia Revealed by 1H and 1H,13C NMR Spectroscopy

scientific article published on 23 February 2020

Metabolic Evidence of Diminished Lipid Oxidation in Women With Polycystic Ovary Syndrome

scientific article published on January 2014

Metamorphic Protein IscU Changes Conformation by cis–trans Isomerizations of Two Peptidyl–Prolyl Peptide Bonds ⬇️

scientific article published on November 15, 2012

Method for determining molar concentrations of metabolites in complex solutions from two-dimensional 1H-13C NMR spectra

scientific article published on 7 November 2007

Micelle-induced folding of spinach thylakoid soluble phosphoprotein of 9 kDa and its functional implications

scientific article

Mitochondrial Cysteine Desulfurase and ISD11 Coexpressed in Escherichia coli Yield Complex Containing Acyl Carrier Protein

scientific article

Mixing apparatus for preparing NMR samples under pressure

scientific article published in September 2003

MolProbity for the masses-of data

scientific article published on 21 July 2015

N-isotope effects on the Raman spectra of Fe(2)S(2) ferredoxin and Rieske ferredoxin: evidence for structural rigidity of metal sites

scientific article published on 7 November 2002

NMR Exchange Format: a unified and open standard for representation of NMR restraint data

scientific article

NMR Investigations ofClostridium pasteurianumRubredoxin. Origin of Hyperfine1H,2H,13C, and15N NMR Chemical Shifts in Iron−Sulfur Proteins As Determined by Comparison of Experimental Data with Hybrid Density Functional Calculations†

article

NMR as a Tool to Investigate the Processes of Mitochondrial and Cytosolic Iron-Sulfur Cluster Biosynthesis

scientific article published on 31 August 2018

NMR characterizations of an amyloidogenic conformational ensemble of the PI3K SH3 domain

scientific article

NMR determination of pKa values for Asp, Glu, His, and Lys mutants at each variable contiguous enzyme-inhibitor contact position of the turkey ovomucoid third domain

scientific article published in March 2003

NMR investigations of the Rieske protein from Thermus thermophilus support a coupled proton and electron transfer mechanism

scientific article

NMR method for measuring carbon-13 isotopic enrichment of metabolites in complex solutions

scientific article

NMR solution structure of ATTp, an Arabidopsis thaliana trypsin inhibitor

scientific article

NMR structure of the mengovirus Leader protein zinc-finger domain

scientific article

NMR-Based Identification of Metabolites in Polar and Non-Polar Extracts of Avian Liver

scientific article published on 16 November 2017

NMR-STAR: comprehensive ontology for representing, archiving and exchanging data from nuclear magnetic resonance spectroscopic experiments

scientific article published on 22 December 2018

NMRFAM-SDF: a protein structure determination framework

scientific article

NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy

scientific article

NMRbot: Python scripts enable high-throughput data collection on current Bruker BioSpin NMR spectrometers

scientific article

NMRmix: A Tool for the Optimization of Compound Mixtures in 1D (1)H NMR Ligand Affinity Screens

scientific article

NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB.

scientific article

Nearest-neighbor effects on backbone alpha and beta carbon chemical shifts in proteins.

scientific article

Oligomerization of the EK18 Mutant of the trp Repressor of Escherichia coli as Observed by NMR Spectroscopy

scholarly article by Young Kee Chae et al published November 1999 in Archives of Biochemistry and Biophysics

One-sample approach to determine the relative orientations of proteins in ternary and binary complexes from residual dipolar coupling measurements

scientific article

One-step purification of bacterially expressed recombinant transducin alpha-subunit and isotopically labeled PDE6 gamma-subunit for NMR analysis.

scientific article

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive

scientific article (publication date: March 2017)

Outcome of a workshop on archiving structural models of biological macromolecules

scientific article

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

scientific article published on 18 June 2015

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop

scientific article

PACSY, a relational database management system for protein structure and chemical shift analysis ⬇️

scientific article published on August 19, 2012

PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models

scientific article

PINE-SPARKY.2 for automated NMR-based protein structure research

scientific article

PINE-SPARKY: graphical interface for evaluating automated probabilistic peak assignments in protein NMR spectroscopy

scientific article published on 03 June 2009

PISA-SPARKY: an interactive SPARKY plugin to analyze oriented solid-state NMR spectra of helical membrane proteins

scientific article published on 13 January 2020

PONDEROSA, an automated 3D-NOESY peak picking program, enables automated protein structure determination ⬇️

scientific article

PONDEROSA-C/S: client-server based software package for automated protein 3D structure determination

scientific article

Preparation of isotopically labeled spinach acyl-acyl carrier protein for NMR structural studies

scientific article published on 7 November 2005

Prevention of aggregation after refolding by balanced stabilization-destabilization: production of the Arabidopsis thaliana protein APG8a (At4g21980) for NMR structure determination

scientific article published in April 2004

Probabilistic Identification of Spin Systems and their Assignments including Coil-Helix Inference as Output (PISTACHIO).

scientific article published in July 2005

Probabilistic interaction network of evidence algorithm and its application to complete labeling of peak lists from protein NMR spectroscopy

scientific article

Probabilistic validation of protein NMR chemical shift assignments

scientific article

Probing Protein-Protein Interactions Using Asymmetric Labeling and Carbonyl-Carbon Selective Heteronuclear NMR Spectroscopy

scientific article published on 03 August 2018

Production in two-liter beverage bottles of proteins for NMR structure determination labeled with either 15N- or 13C-15N.

scientific article

Progressive Stereo Locking (PSL): A Residual Dipolar Coupling Based Force Field Method for Determining the Relative Configuration of Natural Products and Other Small Molecules

scientific article published on 15 June 2017

Project management system for structural and functional proteomics: Sesame

scientific article

Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive

scientific article

Protein Inhibitors of Serine Proteinases: Role of Backbone Structure and Dynamics in Controlling the Hydrolysis Constant ⬇️

scientific article published on May 13, 2003

Protein energetic conformational analysis from NMR chemical shifts (PECAN) and its use in determining secondary structural elements

scientific article

Proton NMR spectra of vertebrate iron-sulfur [2Fe-2S] ferredoxins. Hyperfine resonances suggest different electron delocalization patterns from plant ferredoxins

scientific article (publication date: September 1991)

Publication of nuclear magnetic resonance experimental data with semantic web technology and the application thereof to biomedical research of proteins

scientific article

Quantum chemical calculations on structural models of the catalytic site of chymotrypsin: comparison of calculated results with experimental data from NMR spectroscopy

scientific article

RNA-PAIRS: RNA probabilistic assignment of imino resonance shifts

scientific article

Realism about PDB.

scientific article

Recombinant Expression, Isotope Labeling and Purification of the Vitamin D Receptor Binding Peptide ⬇️

scientific article published on January 1, 2011

Recombinant Production, Isotope Labeling and Purification of ENOD40B: A Plant Peptide Hormone ⬇️

scientific article published on August 1, 2012

Recommendations of the wwPDB NMR Validation Task Force

scientific article

Regulation of Estrogen Receptor α N-Terminus Conformation and Function by Peptidyl Prolyl Isomerase Pin1 ⬇️

scientific article published on November 7, 2011

Relationship between recombinant protein expression and host metabolome as determined by two-dimensional NMR spectroscopy

scientific article

Remediation of the protein data bank archive

scientific article

Response to On prompt update of literature references in the Protein Data Bank

scientific article published on 30 September 2014

Robust, Integrated Computational Control of NMR Experiments to Achieve Optimal Assignment by ADAPT-NMR ⬇️

scientific article published on March 12, 2012

Role of IscX in iron-sulfur cluster biogenesis in Escherichia coli

scientific article

Role of band 3 in regulating metabolic flux of red blood cells

scientific article published on 21 October 2009

Safeguarding the integrity of protein archive

scientific article published on January 2010

Selective quantification by 2D HSQC0 spectroscopy of thiocoraline in an extract from a sponge-derived Verrucosispora sp ⬇️

scientific article published on September 16, 2011

Simultaneous detection and deconvolution of congested NMR spectra containing three isotopically labeled species

scientific article published on 31 May 2008

Simultaneous quantification and identification of individual chemicals in metabolite mixtures by two-dimensional extrapolated time-zero (1)H-(13)C HSQC (HSQC(0)).

scientific article

Sirt3 Promotes the Urea Cycle and Fatty Acid Oxidation during Dietary Restriction ⬇️

scientific article published on January 21, 2011

Small-scale, semi-automated purification of eukaryotic proteins for structure determination

scientific article

Solution Structural Studies of GTP:Adenosylcobinamide-Phosphateguanylyl Transferase (CobY) from Methanocaldococcus jannaschii

scientific article

Solution Structure of a Cyanobacterial Phytochrome GAF Domain in the Red-Light-Absorbing Ground State

scientific article

Solution Structure of the 2A Protease from a Common Cold Agent, Human Rhinovirus C2, Strain W12

scientific article

Solution structure of Arabidopsis thaliana protein At5g39720.1, a member of the AIG2-like protein family

scientific article

Solution structure of At3g04780.1-des15, an Arabidopsis thaliana ortholog of the C-terminal domain of human thioredoxin-like protein

scientific article

Solution structure of T4moC, the Rieske ferredoxin component of the toluene 4-monooxygenase complex

scientific article published on 25 September 2004

Solution structure of YggX: a prokaryotic protein involved in Fe(II) trafficking

scientific article published in March 2006

Solution structure of a homodimeric hypothetical protein, At5g22580, a structural genomics target from Arabidopsis thaliana

scientific article published in July 2004

Solution structure of a late embryogenesis abundant protein (LEA14) from Arabidopsis thaliana, a cellular stress-related protein

scientific article

Solution structure of a single-domain thiosulfate sulfurtransferase from Arabidopsis thaliana

scientific article

Solution structure of a small protein containing a fluorinated side chain in the core

scientific article

Solution structure of a ubiquitin-like domain from tubulin-binding cofactor B.

scientific article published on 9 September 2004

Solution structure of human sorting nexin 22

scientific article

Solution structure of isoform 1 of Roadblock/LC7, a light chain in the dynein complex

scientific article

Solution structure of the N-domain of Wilson disease protein: distinct nucleotide-binding environment and effects of disease mutations

scientific article

Solution structure of the iron-sulfur cluster cochaperone HscB and its binding surface for the iron-sulfur assembly scaffold protein IscU

scientific article published on 15 August 2008

Solution structure of thioredoxin h1 from Arabidopsis thaliana

scientific article published on 29 June 2005

Solution structures of spinach acyl carrier protein with decanoate and stearate

scientific article published on April 2006

Specialized Hsp70 Chaperone (HscA) Binds Preferentially to the Disordered Form, whereas J-protein (HscB) Binds Preferentially to the Structured Form of the Iron-Sulfur Cluster Scaffold Protein (IscU) ⬇️

scientific article published on July 9, 2012

Spin System Modeling of Nuclear Magnetic Resonance Spectra for Applications in Metabolomics and Small Molecule Screening

scientific article published on 23 October 2017

Stable isotope assisted assignment of elemental compositions for metabolomics

scientific article

Strategy for the study of paramagnetic proteins with slow electronic relaxation rates by nmr spectroscopy: application to oxidized human [2Fe-2S] ferredoxin

scientific article published in May 2004

Structural Characterization of Hsp12, the Heat Shock Protein from Saccharomyces cerevisiae, in Aqueous Solution Where It Is Intrinsically Disordered and in Detergent Micelles Where It Is Locally α-Helical ⬇️

scientific article published on October 13, 2011

Structural Role of the Terminal Disulfide Bond in the Sweetness of Brazzein

scientific article

Structural and functional characterization of a novel phosphatase from the Arabidopsis thaliana gene locus At1g05000

scientific article

Structural basis for RNA recognition by a type II poly(A)-binding protein

scientific article

Structural basis for the catalytic mechanism of mammalian 25-kDa thiamine triphosphatase

scientific article

Structural basis for the photoconversion of a phytochrome to the activated Pfr form

scientific article

Structural dependencies of protein backbone 2JNC' couplings

scientific article published on 27 February 2008

Structural insight into the self-sacrifice mechanism of enediyne resistance

scientific article

Structural rearrangement of human lymphotactin, a C chemokine, under physiological solution conditions

scientific article

Structural/Functional Properties of Human NFU1, an Intermediate [4Fe-4S] Carrier in Human Mitochondrial Iron-Sulfur Cluster Biogenesis

scientific article published on 28 October 2016

Structure and Function of the PriC DNA Replication Restart Protein

scientific article published on 5 July 2016

Structure and dynamics of the iron-sulfur cluster assembly scaffold protein IscU and its interaction with the cochaperone HscB.

scientific article published on July 2009

Structure of Ala24/Asp61 --> Asp24/Asn61 substituted subunit c of Escherichia coli ATP synthase: implications for the mechanism of proton transport and rotary movement in the F0 complex

scientific article

Structure of Human J-type Co-chaperone HscB Reveals a Tetracysteine Metal-binding Domain

scientific article

Structure of the putative 32 kDa myrosinase-binding protein from Arabidopsis (At3g16450.1) determined by SAIL-NMR

scientific article

Structure-function relationships of brazzein variants with altered interactions with the human sweet taste receptor

scientific article published on 23 December 2015

Structures of proteins of biomedical interest from the Center for Eukaryotic Structural Genomics

scientific article published on 06 September 2007

Tangled web of interactions among proteins involved in iron-sulfur cluster assembly as unraveled by NMR, SAXS, chemical crosslinking, and functional studies.

scientific article

Temperature‐dependent conformational change affecting Tyr11 and sweetness loops of brazzein ⬇️

scientific article published on February 25, 2013

Templated Collagen "Double Helices" Maintain Their Structure

scientific article published on 08 January 2020

The AUDANA algorithm for automated protein 3D structure determination from NMR NOE data

scientific article

The CCPN data model for NMR spectroscopy: development of a software pipeline

scientific article (publication date: June 2005)

The CCPN project: an interim report on a data model for the NMR community

scientific article

The Center for Eukaryotic Structural Genomics.

scientific article

The Complex Energy Landscape of the Protein IscU

scientific article

The NMR restraints grid at BMRB for 5,266 protein and nucleic acid PDB entries

scientific article

The Protein Data Bank archive as an open data resource

scientific article

The Protein Data Bank at 40: reflecting on the past to prepare for the future

scientific article (publication date: 7 March 2012)

The archiving and dissemination of biological structure data

scientific article

The future of NMR-based metabolomics

scientific article

The future of the Protein Data Bank

scientific article (publication date: March 2013)

The length of the bound fatty acid influences the dynamics of the acyl carrier protein and the stability of the thioester bond

scientific article

The sigma-1 receptor protects against cellular oxidative stress and activates antioxidant response elements ⬇️

scientific article published on February 22, 2012

The structure at 2.4 A resolution of the protein from gene locus At3g21360, a putative Fe(II)/2-oxoglutarate-dependent enzyme from Arabidopsis thaliana

scientific article

The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data

scientific article

Three hydrophobic amino acids in Escherichia coli HscB make the greatest contribution to the stability of the HscB-IscU complex ⬇️

scientific article published on January 26, 2011

Three-Dimensional Structure and Determinants of Stability of the Iron–Sulfur Cluster Scaffold Protein IscU from Escherichia coli

scientific article

Three-dimensional structure determined for a subunit of human tRNA splicing endonuclease (Sen15) reveals a novel dimeric fold

scientific article

Three-dimensional structure of the AAH26994.1 protein from Mus musculus, a putative eukaryotic Urm1

scientific article published on August 2005

Three-dimensional structure of the water-insoluble protein crambin in dodecylphosphocholine micelles and its minimal solvent-exposed surface

scientific article published in April 2006

Tracing Metabolite Footsteps of Escherichia coli Along the Time Course of Recombinant Protein Expression by Two-Dimensional NMR Spectroscopy.

scientific article published on December 2012

Trans-hydrogen-bond (h2)J(NN) and (h1)J(NH) couplings in the DNA A-T base pair: natural bond orbital analysis

scientific article published in February 2002

Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics

scientific article (publication date: 3 June 2003)

Two-dimensional concurrent HMQC-COSY as an approach for small molecule chemical shift assignment and compound identification ⬇️

scientific article published on March 4, 2011

Uncovering a membrane-distal conformation of KRAS available to recruit RAF to the plasma membrane

scientific article published on 10 September 2020

Unique identifiers for small molecules enable rigorous labeling of their atoms

scientific article

Unique opportunities for NMR methods in structural genomics.

scientific article

Use of NMR Saturation Transfer Difference Spectroscopy to Study Ligand Binding to Membrane Proteins ⬇️

scientific article published on January 1, 2012

Utilization of protein intrinsic disorder knowledge in structural proteomics ⬇️

scientific article published on 08 December 2012

Validation of Structures in the Protein Data Bank

scientific article published on 21 November 2017

Wheat Germ Cell-Free Expression System for Protein Production

article

Wheat germ cell-free platform for eukaryotic protein production

scientific article published on 23 August 2006

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data

scientific article published on 7 February 2018

X-ray structure of Arabidopsis At1g77680, 12-oxophytodienoate reductase isoform 1.

scientific article published in October 2005

X-ray structure of Arabidopsis At2g06050, 12-oxophytodienoate reductase isoform 3.

scientific article published in January 2005

[2Fe-2S]-ferredoxin binds directly to cysteine desulfurase and supplies an electron for iron-sulfur cluster assembly but is displaced by the scaffold protein or bacterial frataxin

scientific article published on 20 May 2013

pH-induced conformational change of IscU at low pH correlates with protonation/deprotonation of two conserved histidine residues

scientific article

rNMR: open source software for identifying and quantifying metabolites in NMR spectra

scientific article

Paulina is supported by:

About Paulina

Help